Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005438

Physical Location & Seq

Genomic Coordinates Reverse (-)

1483097 .. 1485130

Gene Structure 2034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGAATCAGATCATCAGCAGCATATGAACTCTAGCTTGACGCGCTACCGGTCAGCTCCCAGCTCATATTTCACAAACATTTTGGACTCAGAGGTTTGTGAGCCCTTGTTCAATCGGCCTTCTAGCCCTGAAACCGAGAGGATTTTAGCCCGGTTTCTGGCTAGTGAAGGTGGTGGTGATGGAGGAGGAGGTGGTGGTGGAGGAACAGAAGAAATTGCATCACAACACAAAGTTGAAACACAGATTAATAATCAGCAACCACAATTTATGGTGCCTAAGGTGGATGATGAAGTGGGGATGATTCAACAGCAGCAGCAGCAGCAGAGCAATTTGAACAACTATTCATCTGTTGCTCAAGGATTTTACCAGCCGACGTCGAAACCGCCTTTGCCTAATCAGAACTTGAATGAAGGAGCTTATTCAATGGGGGGAAGTCACTTGCCTTCTGTCAAAACCGGTGGTGGTGTTGCAAATTCCAATCTCATTCGGCATAGTAGCTCGCCTGCTGGATTGTTCTCCAATATGAACATTGATGCGGCAGGCTATGCTGCATTGAGAGGAATGGGGAACTTCGGAGCAAGTAATAGCACTGGTGAAGAAGCATCTTTTTCTTCTGCGAGCAGGTTGAAAATTTTCTCTTCAGGGCCACCATCTACGTCGGGGCTAATGAGTCCGATTGCTGAAATTGGGAACAAAAGAATGCGATCGAATAGTCAAGATGCTGGAGGTTTTGGGGATGGCCGTGGTAACAATTATGTGACTGGTTTCCCAATGGATTCATGGGATGACTCTGCGATTCTGGGTGATGATACAGGCTTTAGAGATGACGAAGTGAAAGCATACACTGGTTTAAGTCCATCTGAAACTCAGGATGTGGAGGCTGGAAATCATCCTCCTACACTTCTAGCTCATCACTTGAGCTTGCCAAAAACATCCACGGAGATGGCTGCCATTGAAAAGTTTTTACAGTTCCAAGATTCTGTTCCTTGTAAGATTCGAGCAAAGCGGGGCTGCGCCACACACCCAAGAAGCATTGCTGAGAGGGTGAGAAGAACCCGAATTAGCGAACGAATGAGGAAACTGCAAGAGCTTGTACCAAACATGGACAAGCAAGCACACACTTCCGACATGTTGGATTTGGCTGTTGACTACATTAAAGACCTTCAAACTCAAGTCCAGACGCTATCCGAAAATCGTGCCAAGTGTACTTGCTCAAACAAGCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

410

Amino Acids

44.26

Weight (kDa)

5.84

Isoelectric Point (pI)

58.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	344 - 389	5e-08	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51140
fragaria_vesca	FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280 FvH4_3g43280
malus_domestica	MD03G1023200.v1.1 MD11G1028100.v1.1
prunus_persica	Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1 Prupe.6G022200_v2.0.a1
pyrus_communis	pycom03g01980 pycom11g02170
rosa_chinensis	RchiOBHm_Chr5g0077341
rosa_laevigata	RLG00000036688
rosa_multiflora	Rmu_sc0014745.1_g000003 Rmu_sc0014745.1_g000004
rosa_roxburghii	Rroxscaffold_1G00004570
rosa_rugosa	Rorug05G0453900 Rorug05G0454000
rosa_samantha	Rh5AG509200 Rh5BG530700 Rh5CG555000 Rh5DG542700
rosa_wichuraiana	Rw5G046830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	377
Acc36I	ACCTGC	1 cut(s)	612
AccB1I	GGYRCC	1 cut(s)	271
AccII	CGCG	1 cut(s)	43
AciI	CCGC	3 cut(s)	383, 536, 1006
AcoI	YGGCCR	1 cut(s)	739
AcsI	RAATTY	2 cut(s)	472, 630
AcuI	CTGAAG	1 cut(s)	624
AcyI	GRCGYC	1 cut(s)	374
AfaI	GTAC	2 cut(s)	1095, 1207
AfiI	CCNNNNNNNGG	1 cut(s)	157
AflIII	ACRYGT	1 cut(s)	1128
AgeI	ACCGGT	2 cut(s)	48, 455
AgsI	TTSAA	9 cut(s)	112, 236, 305, 334, 406, 423, 628, 956, 1166
AjuI	GAANNNNNNNTTGG	2 cut(s)	966, 998
AluBI	AGCT	8 cut(s)	36, 56, 63, 416, 498, 908, 921, 1090
AluI	AGCT	8 cut(s)	36, 56, 63, 416, 498, 908, 921, 1090
AoxI	GGCC	3 cut(s)	116, 644, 739
ApeKI	GCWGC	9 cut(s)	19, 310, 313, 316, 319, 548, 947, 1011, 1222
ApoI	RAATTY	2 cut(s)	472, 630
AseI	ATTAAT	1 cut(s)	246
AsiGI	ACCGGT	2 cut(s)	48, 455
Asp700I	GAANNNNTTC	1 cut(s)	632
AspLEI	GCGC	2 cut(s)	45, 1016
AspS9I	GGNCC	1 cut(s)	644
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	4 cut(s)	188, 605, 815, 1057
AxyI	CCTNAGG	1 cut(s)	276
BanI	GGYRCC	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	105
BbvI	GCAGC	8 cut(s)	31, 322, 325, 328, 331, 535, 934, 998
BccI	CCATC	5 cut(s)	173, 658, 731, 865, 937
BceAI	ACGGC	1 cut(s)	726
BcgI	CGANNNNNNTGC	2 cut(s)	1178, 1212
BcnI	CCSGG	1 cut(s)	151
BfaI	CTAG	4 cut(s)	33, 123, 162, 905
BfuAI	ACCTGC	1 cut(s)	612
Bme1390I	CCNGG	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	644
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	4 cut(s)	227, 523, 611, 709
BpmI	CTGGAG	1 cut(s)	744
BpuEI	CTTGAG	3 cut(s)	339, 937, 1155
BpuMI	CCSGG	1 cut(s)	151
BsaHI	GRCGYC	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	742, 936
BsaWI	WCCGGW	2 cut(s)	48, 455
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse118I	RCCGGY	2 cut(s)	48, 455
Bse1I	ACTGG	3 cut(s)	595, 766, 850
Bse21I	CCTNAGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	1032
BseDI	CCNNGG	2 cut(s)	742, 936
BseGI	GGATG	7 cut(s)	289, 303, 742, 790, 877, 889, 932
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	1032
BseMII	CTCAG	3 cut(s)	102, 881, 1029
BseNI	ACTGG	3 cut(s)	595, 766, 850
BseRI	GAGGAG	2 cut(s)	198, 201
BseXI	GCAGC	8 cut(s)	31, 322, 325, 328, 331, 535, 934, 998
BseYI	CCCAGC	1 cut(s)	59
Bsh1236I	CGCG	1 cut(s)	43
Bsh1285I	CGRYCG	1 cut(s)	707
BshFI	GGCC	3 cut(s)	118, 646, 741
BshNI	GGYRCC	1 cut(s)	271
BshTI	ACCGGT	2 cut(s)	48, 455
BsiEI	CGRYCG	1 cut(s)	707
BsiSI	CCGG	3 cut(s)	49, 151, 456
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmI	GAATGC	1 cut(s)	705
BsnI	GGCC	3 cut(s)	118, 646, 741
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	10, 704
BspACI	CCGC	3 cut(s)	383, 536, 1006
BspANI	GGCC	3 cut(s)	118, 646, 741
BspCNI	CTCAG	3 cut(s)	101, 880, 1030
BspFNI	CGCG	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	273
BspMI	ACCTGC	1 cut(s)	612
BspT107I	GGYRCC	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	1032
BsrFI	RCCGGY	2 cut(s)	48, 455
BsrI	ACTGG	3 cut(s)	595, 766, 850
BssAI	RCCGGY	2 cut(s)	48, 455
BssECI	CCNNGG	2 cut(s)	742, 936
BssMI	GATC	2 cut(s)	10, 704
BssNI	GRCGYC	1 cut(s)	374
Bst4CI	ACNGT	1 cut(s)	969
Bst6I	CTCTTC	1 cut(s)	643
BstACI	GRCGYC	1 cut(s)	374
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstC8I	GCNNGC	6 cut(s)	500, 504, 541, 619, 923, 1113
BstDEI	CTNAG	4 cut(s)	88, 276, 867, 1038
BstDSI	CCRYGG	2 cut(s)	742, 936
BstF5I	GGATG	7 cut(s)	289, 303, 742, 790, 877, 889, 932
BstFNI	CGCG	1 cut(s)	43
BstHHI	GCGC	2 cut(s)	45, 1016
BstKTI	GATC	2 cut(s)	13, 707
BstMBI	GATC	2 cut(s)	10, 704
BstMCI	CGRYCG	1 cut(s)	707
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 316, 319, 545
BstNSI	RCATGY	1 cut(s)	1132
BstSCI	CCNGG	1 cut(s)	149
BstUI	CGCG	1 cut(s)	43
BstV1I	GCAGC	8 cut(s)	31, 322, 325, 328, 331, 535, 934, 998
BstXI	CCANNNNNNTGG	1 cut(s)	943
Bsu36I	CCTNAGG	1 cut(s)	276
BsuRI	GGCC	3 cut(s)	118, 646, 741
BtgI	CCRYGG	2 cut(s)	742, 936
BtsCI	GGATG	7 cut(s)	289, 303, 742, 790, 877, 889, 932
BtsIMutI	CAGTG	2 cut(s)	588, 843
BveI	ACCTGC	1 cut(s)	612
Cac8I	GCNNGC	6 cut(s)	500, 504, 541, 619, 923, 1113
CfoI	GCGC	2 cut(s)	45, 1016
Cfr10I	RCCGGY	2 cut(s)	48, 455
Cfr13I	GGNCC	1 cut(s)	644
CseI	GACGC	2 cut(s)	49, 1189
Csp6I	GTAC	2 cut(s)	1094, 1206
CspAI	ACCGGT	2 cut(s)	48, 455
CspCI	CAANNNNNGTGG	2 cut(s)	439, 474
CviAII	CATG	3 cut(s)	780, 1102, 1129
CviQI	GTAC	2 cut(s)	1094, 1206
DdeI	CTNAG	4 cut(s)	88, 276, 867, 1038
DpnI	GATC	2 cut(s)	12, 706
DpnII	GATC	2 cut(s)	10, 704
EaeI	YGGCCR	1 cut(s)	739
Eam1104I	CTCTTC	1 cut(s)	643
EarI	CTCTTC	1 cut(s)	643
Eco24I	GRGCYC	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	624
Eco81I	CCTNAGG	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	3 cut(s)	783, 1105, 1132
FatI	CATG	3 cut(s)	779, 1101, 1128
FauI	CCCGC	1 cut(s)	999
FauNDI	CATATG	1 cut(s)	24
FokI	GGATG	7 cut(s)	296, 310, 749, 797, 876, 884, 919
FriOI	GRGCYC	1 cut(s)	105
FspBI	CTAG	4 cut(s)	33, 123, 162, 905
GlaI	GCGC	2 cut(s)	44, 1015
GsaI	CCCAGC	1 cut(s)	63
GsuI	CTGGAG	1 cut(s)	744
HaeIII	GGCC	3 cut(s)	118, 646, 741
HapII	CCGG	3 cut(s)	49, 151, 456
HgaI	GACGC	2 cut(s)	49, 1189
HhaI	GCGC	2 cut(s)	45, 1016
Hin1I	GRCGYC	1 cut(s)	374
Hin1II	CATG	3 cut(s)	783, 1105, 1132
Hin6I	GCGC	2 cut(s)	43, 1014
HinP1I	GCGC	2 cut(s)	43, 1014
HincII	GTYRAC	1 cut(s)	1147
HindII	GTYRAC	1 cut(s)	1147
HinfI	GANTC	9 cut(s)	5, 86, 301, 670, 776, 788, 796, 977, 994
HpaII	CCGG	3 cut(s)	49, 151, 456
HphI	GGTGA	4 cut(s)	188, 605, 815, 1057
Hpy166II	GTNNAC	2 cut(s)	1147, 1206
Hpy188I	TCNGA	8 cut(s)	10, 91, 399, 575, 675, 862, 1126, 1189
Hpy188III	TCNNGA	3 cut(s)	716, 869, 1177
Hpy8I	GTNNAC	2 cut(s)	1147, 1206
Hpy99I	CGWCG	3 cut(s)	376, 379, 661
HpyAV	CCTTC	5 cut(s)	129, 161, 404, 453, 1172
HpyCH4III	ACNGT	1 cut(s)	969
HpyCH4IV	ACGT	2 cut(s)	374, 656
HpyCH4V	TGCA	4 cut(s)	218, 470, 551, 1084
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 316, 319, 545
HpyF3I	CTNAG	4 cut(s)	88, 276, 867, 1038
HpySE526I	ACGT	2 cut(s)	374, 656
Hsp92I	GRCGYC	1 cut(s)	374
Hsp92II	CATG	3 cut(s)	783, 1105, 1132
HspAI	GCGC	2 cut(s)	43, 1014
Kzo9I	GATC	2 cut(s)	10, 704
LmnI	GCTCC	3 cut(s)	61, 413, 575
Lsp1109I	GCAGC	8 cut(s)	31, 322, 325, 328, 331, 535, 934, 998
LweI	GCATC	4 cut(s)	227, 523, 611, 709
MaeI	CTAG	4 cut(s)	33, 123, 162, 905
MaeII	ACGT	2 cut(s)	374, 656
MaeIII	GTNAC	3 cut(s)	434, 746, 757
MalI	GATC	2 cut(s)	12, 706
MboI	GATC	2 cut(s)	10, 704
MboII	GAAGA	5 cut(s)	221, 603, 608, 630, 1062
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	8 cut(s)	213, 263, 328, 472, 630, 684, 751, 1059
MlyI	GAGTC	3 cut(s)	80, 679, 782
MmeI	TCCRAC	2 cut(s)	1113, 1149
MroXI	GAANNNNTTC	1 cut(s)	632
MseI	TTAA	3 cut(s)	246, 851, 1155
MslI	CAYNNNNRTG	1 cut(s)	941
MspI	CCGG	3 cut(s)	49, 151, 456
MspR9I	CCNGG	1 cut(s)	151
Mva1269I	GAATGC	1 cut(s)	705
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	4 cut(s)	42, 316, 319, 545
NciI	CCSGG	1 cut(s)	151
NdeI	CATATG	1 cut(s)	24
NdeII	GATC	2 cut(s)	10, 704
NlaIII	CATG	3 cut(s)	783, 1105, 1132
NlaIV	GGNNCC	1 cut(s)	273
NmuCI	GTSAC	2 cut(s)	434, 757
NspI	RCATGY	1 cut(s)	1132
PciI	ACATGT	1 cut(s)	1128
PctI	GAATGC	1 cut(s)	705
PdmI	GAANNNNTTC	1 cut(s)	632
PfeI	GAWTC	6 cut(s)	5, 301, 776, 796, 977, 994
PinAI	ACCGGT	2 cut(s)	48, 455
Ple19I	CGATCG	1 cut(s)	707
PleI	GAGTC	3 cut(s)	80, 678, 782
PpsI	GAGTC	3 cut(s)	80, 678, 782
PscI	ACATGT	1 cut(s)	1128
PshBI	ATTAAT	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	644
PvuI	CGATCG	1 cut(s)	707
RsaI	GTAC	2 cut(s)	1095, 1207
RsaNI	GTAC	2 cut(s)	1094, 1206
RseI	CAYNNNNRTG	1 cut(s)	941
SaqAI	TTAA	3 cut(s)	246, 851, 1155
Sau3AI	GATC	2 cut(s)	10, 704
Sau96I	GGNCC	1 cut(s)	644
SchI	GAGTC	3 cut(s)	80, 679, 782
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	4 cut(s)	227, 523, 611, 709
SmiMI	CAYNNNNRTG	1 cut(s)	941
SmlI	CTYRAG	3 cut(s)	354, 916, 1170
SmoI	CTYRAG	3 cut(s)	354, 916, 1170
Sse9I	AATT	8 cut(s)	213, 263, 328, 472, 630, 684, 751, 1059
SsiI	CCGC	3 cut(s)	383, 536, 1006
SspMI	CTAG	4 cut(s)	33, 123, 162, 905
StyD4I	CCNGG	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	969
TaiI	ACGT	2 cut(s)	377, 659
TaqI	TCGA	3 cut(s)	377, 707, 997
TasI	AATT	8 cut(s)	213, 263, 328, 472, 630, 684, 751, 1059
TatI	WGTACW	1 cut(s)	1205
TauI	GCSGC	1 cut(s)	539
TfiI	GAWTC	6 cut(s)	5, 301, 776, 796, 977, 994
Tru1I	TTAA	3 cut(s)	246, 851, 1155
Tru9I	TTAA	3 cut(s)	246, 851, 1155
TscAI	CASTG	2 cut(s)	595, 850
TseFI	GTSAC	2 cut(s)	434, 757
TseI	GCWGC	9 cut(s)	19, 310, 313, 316, 319, 548, 947, 1011, 1222
Tsp45I	GTSAC	2 cut(s)	434, 757
TspDTI	ATGAA	6 cut(s)	41, 303, 333, 423, 539, 768
TspGWI	ACGGA	1 cut(s)	953
TspRI	CASTG	2 cut(s)	595, 850
VspI	ATTAAT	1 cut(s)	246
XapI	RAATTY	2 cut(s)	472, 630
XceI	RCATGY	1 cut(s)	1132
XcmI	CCANNNNNNNNNTGG	1 cut(s)	777
XmnI	GAANNNNTTC	1 cut(s)	632
XspI	CTAG	4 cut(s)	33, 123, 162, 905
ZraI	GACGTC	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.