Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007746

Physical Location & Seq

Genomic Coordinates Reverse (-)

4738175 .. 4743544

Gene Structure 5370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2472 bp

ATGTCGTCGGTCGAGTATTTGCGTCCAACAATCCACAACAGGTTTTGCCTGAACTTGAATTCTAATGCTTATCATTGCCGCCATGGATTGGGATTCCTCCGCAGCCAATCGAGGGGTTTCAACCAGGAACCGAGGCGTTGCGTTTCGAACTCGGCGGTGTTCCCTTCGGTCACGTTGCACGGACAGGGCGGCCGAGCTGTGAGAGTTTCCGAGAGGTTCGGCGGCCTCTGGAGGAGCCACGGAGGGTTTCGAACGGTTAGGGCTTCGGCGAGCGGTCAGGACACCGATTCCGGGGAGAAGAGCGAGGCGAAGCCGACGGAGGGCCAGGCTGTGAACAATAACCCGCCAAGTTCGAGCTCGCCGGCTTCTAATCGGCGGCGAGAGAGTCGAAAGAAAGAGAATTGGTGGTGGTCGAAAGGCGGGAAATGGCGGTGGCAGCCGATAGTTCAGGCACAAGAAATTGGAATCTTGCTGTTACAATTGGGTATTGTAATTTTCGTCATGCGGTTGCTCCGGCCTGGAATTCCGTTACCCGGGTCGGAGCCGAGGACGCCCACGACGTTCGTTAGCGTGCCGTACAGTGATTTTCTGAGCAAGATTAATAGTAACCAGGTGCAGAAGGTTGAGGTTGATGGGGTTCATGTTATGTTTAAGTTGAAGTCTGAGCAGGGTGAGCAAGAAAGTGAAGTGAGTGGTGGTGGGGCGAGCAATTTTCTGGAATCGGAGGCCTTGGTAAGAAGTGTGGCTCCGACGAAGAGGGTGGTTTACACGACGACAAGGCCAACTGATATCAAGACGCCGTATGAGAAGATGCTTGAGAATGAGGTGGAGTTCGGGTCGCCGGATAAGCGGTCAGGCGGATTCTTGAACTCTGCAATGATAGCTTTGTTTTATGTTGCTGTGCTTGCAGGGCTTCTCCACAGGTTCCCTGTAAACTTTACTCAGCAAACAGCCGGTCAGATTAGGAACAGGAAATCTGGGGGCTCTGCTGGTGCTAAAGCATCTGAACAAGGGGAAGCAATAACCTTTGCTGATGTTGCTGGTGTTGATGAGGCTAAAGCGGAGCTAGAAGAAATTGTGGAATTTCTTCGGAATCCAGACAAGTATATACGACTTGGTGCTCGTCCTCCACGTGGAGTTCTCCTGGTGGGTCTTCCTGGGACAGGTAAGACTCTTCTTGCCAAGGCTGTGGCTGGGGAAGCTGATGTGCCCTTCATAAGTTGCTCTGCTAGTGAGTTTGTAGAGTTGTATGTTGGCATGGGTGCCTCTCGTGTAATGGATCTATTTGCCCGGGCAAAAAAGGAGGCACCGTCCATAATATTTATTGATGAGATAGATGCTGTGGCAAAAAGCCGTGATGGAAAATTCCGTATTGTCAGCAATGATGAGCGAGAACAAACCTTGAATCAGTTGCTCACTGAAATGGATGGATTTGACAGCAACTCTGCGGTTATTGTTCTTGGAGCAACTAATCGCGCAGATGTCTTAGACCCAGCACTTCGTCGACCAGGGAGATTTGATCGTGTAGTTATGGTGGAAACACCGGATAGGAGAGGAAGAGAGGAGATTCTAAAGGTGCATGCTACCAAAAAAGAACTTCCTTTGGCAAAAGATGTCTACCTTGGTGACATTGCTTCTATGACCACTGGCTTTACTGGGGCAGATCTCGTTACAAATTTGGTGAATGAAGCTGCTTTATTGGCTGGAAGACAAAGCAAGTTGGTTGTGGAAAAAATTGATTTTATTCAAGCTGTGGAGAGATTAATAGCTGGTATAGAAAAGAAGACTGCCAAGTTGCAGGGAAGTGAGAAGGCTGTAGTTGCACGACATGAAGCTGGTCATGCAGTAGTGGGGACTGCTGTTGCAAGTCTTCTTCCTGGACAGCCACGTGTTGAGAAATTGAGCATATTGCCAAGATCGGGAGGGGCGTTGGGCTTCACTTATATTCCTCCAACAACAGAAGATAGATATTTACTCTTCATTGATGAGTTGCGTGGACGTTTGGTTACACTTCTCGGAGGACGTGCAGCAGAAGAATTTGTATATTCAGGTCGTGTCTCAACGGGTGCACTTGATGATATACGACGAGCAACTGACATGGCATACAAAGCAGTAGCTGAGTATGGTCTAAATCAGAACATTGGCCCTGTGTCTATAGCAACACTTTCTGCTGGTGGAATGGATGAGTCTGGTGGCGGTGCTCTTTGGGGAAGGGATCAGGGGCATCTTGTTGATCTTGTTCAAGGAGAGGTTAAAGCTTTGCTGCAATCTGCTTTGGGTATAGCTCTTTCGGTTGTACGTGCTAATCCTACTGTTTTGGAGGGTCTTGGTGCTCAGCTGGAAGAAAAAGAGAAGGTAGAAGGCGAAGAGCTACAAAAGTGGTTAAAATTGGTGGTTGCACCAACGGAACTGTCAATCTTCATTAGTGGCAAGCAAGAGTCTCTTCCCCCATTGCAGACCATCTCTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

824

Amino Acids

89.27

Weight (kDa)

8.7

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsH_ext	PF06480	161 - 241	9.2e-06	FtsH Extracellular
AAA	PF00004	380 - 513	1.4e-42	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	538 - 581	2.2e-07	AAA+ lid domain
Peptidase_M41	PF01434	600 - 793	1.2e-34	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47060 AT5G58870
fragaria_vesca	FvH4_3g38190 FvH4_3g38190 FvH4_3g38190
malus_domestica	MD03G1074100.v1.1 MD11G1080400.v1.1
prunus_persica	Prupe.6G060800_v2.0.a1 Prupe.6G060800_v2.0.a1 Prupe.6G060800_v2.0.a1
pyrus_communis	pycom03g05990 pycom11g06770
rosa_chinensis	RchiOBHm_Chr5g0068621
rosa_laevigata	RLG00000035985
rosa_multiflora	Rmu_co8416215.1_g000001 Rmu_sc0000376.1_g000003 Rmu_sc0004721.1_g000004
rosa_roxburghii	Rroxscaffold_1G00012250
rosa_rugosa	Rorug05G0392000
rosa_samantha	Rh5AG449600 Rh5BG467800 Rh5CG489600 Rh5DG481200
rosa_wichuraiana	Rw5G041980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1262, 1306
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccBSI	CCGCTC	1 cut(s)	273
AccI	GTMKAC	2 cut(s)	1504, 1617
AccII	CGCG	1 cut(s)	1476
AclWI	GGATC	2 cut(s)	1287, 2223
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	6 cut(s)	58, 522, 1082, 1364, 1675, 2036
AcvI	CACGTG	2 cut(s)	1133, 1889
AcyI	GRCGYC	2 cut(s)	551, 797
AfaI	GTAC	2 cut(s)	578, 2298
AfiI	CCNNNNNNNGG	8 cut(s)	88, 112, 291, 320, 533, 1133, 1163, 1919
AflIII	ACRYGT	1 cut(s)	1888
AgsI	TTSAA	7 cut(s)	58, 121, 658, 868, 1405, 1748, 2243
AjiI	CACGTC	1 cut(s)	2024
AjnI	CCWGG	8 cut(s)	123, 324, 517, 609, 1143, 1156, 1507, 1876
Alw21I	GWGCWC	5 cut(s)	359, 1123, 2071, 2203, 2335
Alw26I	GTCTC	2 cut(s)	2062, 2445
Alw44I	GTGCAC	1 cut(s)	2067
AlwI	GGATC	2 cut(s)	1287, 2223
AlwNI	CAGNNNCTG	1 cut(s)	2117
Ama87I	CYCGRG	2 cut(s)	533, 1290
AoxI	GGCC	7 cut(s)	190, 223, 322, 515, 726, 779, 2143
ApaLI	GTGCAC	1 cut(s)	2067
ApeKI	GCWGC	5 cut(s)	102, 436, 1691, 2027, 2263
ApoI	RAATTY	6 cut(s)	58, 522, 1082, 1364, 1675, 2036
ArsI	GACNNNNNNTTYG	2 cut(s)	940, 972
AseI	ATTAAT	2 cut(s)	600, 1763
Asp700I	GAANNNNTTC	1 cut(s)	1086
AspLEI	GCGC	1 cut(s)	1478
AspS9I	GGNCC	2 cut(s)	322, 2144
AsuC2I	CCSGG	5 cut(s)	292, 534, 535, 1291, 1292
AsuHPI	GGTGA	3 cut(s)	683, 1637, 1693
AsuII	TTCGAA	2 cut(s)	146, 250
AvaI	CYCGRG	2 cut(s)	533, 1290
BaeGI	GKGCMC	2 cut(s)	1212, 2071
BanI	GGYRCC	2 cut(s)	1262, 1306
BanII	GRGCYC	2 cut(s)	359, 986
BauI	CACGAG	1 cut(s)	1269
BbrPI	CACGTG	2 cut(s)	1133, 1889
BbsI	GAAGAC	4 cut(s)	1145, 1714, 1790, 1862
Bbv12I	GWGCWC	5 cut(s)	359, 1123, 2071, 2203, 2335
BbvI	GCAGC	5 cut(s)	114, 448, 1678, 2039, 2250
BccI	CCATC	4 cut(s)	626, 1352, 1421, 2468
BceAI	ACGGC	3 cut(s)	559, 784, 1338
BciT130I	CCWGG	8 cut(s)	125, 326, 519, 611, 1145, 1158, 1509, 1878
BcnI	CCSGG	5 cut(s)	292, 534, 535, 1291, 1292
BcoDI	GTCTC	2 cut(s)	2062, 2445
BfaI	CTAG	2 cut(s)	1067, 1230
BfmI	CTRYAG	2 cut(s)	1815, 2154
BglII	AGATCT	1 cut(s)	1663
BisI	GCNGC	9 cut(s)	79, 103, 190, 223, 377, 437, 1692, 2028, 2264
BlpI	GCTNAGC	1 cut(s)	2334
BlsI	GCNGC	9 cut(s)	80, 104, 191, 224, 378, 438, 1693, 2029, 2265
BmeT110I	CYCGRG	2 cut(s)	533, 1290
BmgBI	CACGTC	1 cut(s)	2024
BmgT120I	GGNCC	2 cut(s)	322, 2144
BmiI	GGNNCC	7 cut(s)	129, 236, 543, 747, 926, 1264, 1308
BmrI	ACTGGG	1 cut(s)	1665
BmsI	GCATC	4 cut(s)	801, 1010, 1327, 2233
BmuI	ACTGGG	1 cut(s)	1665
BpiI	GAAGAC	4 cut(s)	1145, 1714, 1790, 1862
BpmI	CTGGAG	1 cut(s)	250
Bpu1102I	GCTNAGC	1 cut(s)	2334
Bpu14I	TTCGAA	2 cut(s)	146, 250
BpuEI	CTTGAG	1 cut(s)	836
BpuMI	CCSGG	5 cut(s)	292, 534, 535, 1291, 1292
BsaAI	YACGTR	3 cut(s)	1133, 1889, 2300
BsaHI	GRCGYC	2 cut(s)	551, 797
BsaWI	WCCGGW	1 cut(s)	1543
BsaXI	ACNNNNNCTCC	4 cut(s)	821, 851, 1295, 1325
Bsc4I	CCNNNNNNNGG	8 cut(s)	88, 112, 291, 320, 533, 1133, 1163, 1919
Bse118I	RCCGGY	2 cut(s)	361, 953
Bse1I	ACTGG	2 cut(s)	1651, 1660
Bse3DI	GCAATG	5 cut(s)	73, 882, 1387, 1629, 2450
BseBI	CCWGG	8 cut(s)	125, 326, 519, 611, 1145, 1158, 1509, 1878
BseGI	GGATG	2 cut(s)	1432, 2188
BseLI	CCNNNNNNNGG	8 cut(s)	88, 112, 291, 320, 533, 1133, 1163, 1919
BseMI	GCAATG	5 cut(s)	73, 882, 1387, 1629, 2450
BseMII	CTCAG	5 cut(s)	581, 654, 956, 2109, 2348
BseNI	ACTGG	2 cut(s)	1651, 1660
BseRI	GAGGAG	2 cut(s)	247, 1577
BseSI	GKGCMC	2 cut(s)	1212, 2071
BseX3I	CGGCCG	1 cut(s)	190
BseXI	GCAGC	5 cut(s)	114, 448, 1678, 2039, 2250
BseYI	CCCAGC	2 cut(s)	1193, 1492
BsgI	GTGCAG	2 cut(s)	635, 2046
Bsh1236I	CGCG	1 cut(s)	1476
Bsh1285I	CGRYCG	2 cut(s)	12, 193
BshFI	GGCC	7 cut(s)	192, 225, 324, 517, 728, 781, 2145
BshNI	GGYRCC	2 cut(s)	1262, 1306
BsiEI	CGRYCG	2 cut(s)	12, 193
BsiHKAI	GWGCWC	5 cut(s)	359, 1123, 2071, 2203, 2335
BsiHKCI	CYCGRG	2 cut(s)	533, 1290
BsiSI	CCGG	8 cut(s)	291, 362, 514, 534, 842, 954, 1291, 1544
BslFI	GGGAC	2 cut(s)	1174, 1867
BslI	CCNNNNNNNGG	8 cut(s)	88, 112, 291, 320, 533, 1133, 1163, 1919
BsmAI	GTCTC	2 cut(s)	2062, 2445
BsmFI	GGGAC	2 cut(s)	1174, 1867
BsnI	GGCC	7 cut(s)	192, 225, 324, 517, 728, 781, 2145
BsoBI	CYCGRG	2 cut(s)	533, 1290
Bsp119I	TTCGAA	2 cut(s)	146, 250
Bsp1286I	GDGCHC	7 cut(s)	359, 986, 1123, 1212, 2071, 2203, 2335
Bsp143I	GATC	6 cut(s)	1279, 1519, 1663, 1916, 2215, 2233
Bsp1720I	GCTNAGC	1 cut(s)	2334
Bsp19I	CCATGG	1 cut(s)	82
BspANI	GGCC	7 cut(s)	192, 225, 324, 517, 728, 781, 2145
BspCNI	CTCAG	5 cut(s)	582, 655, 955, 2110, 2347
BspFNI	CGCG	1 cut(s)	1476
BspLI	GGNNCC	7 cut(s)	129, 236, 543, 747, 926, 1264, 1308
BspPI	GGATC	2 cut(s)	1287, 2223
BspQI	GCTCTTC	2 cut(s)	293, 2361
BspT104I	TTCGAA	2 cut(s)	146, 250
BspT107I	GGYRCC	2 cut(s)	1262, 1306
BsrBI	CCGCTC	1 cut(s)	273
BsrDI	GCAATG	5 cut(s)	73, 882, 1387, 1629, 2450
BsrFI	RCCGGY	2 cut(s)	361, 953
BsrI	ACTGG	2 cut(s)	1651, 1660
BssAI	RCCGGY	2 cut(s)	361, 953
BssMI	GATC	6 cut(s)	1279, 1519, 1663, 1916, 2215, 2233
BssNI	GRCGYC	2 cut(s)	551, 797
BssSI	CACGAG	1 cut(s)	1269
BssT1I	CCWWGG	4 cut(s)	82, 729, 1182, 1621
Bst2BI	CACGAG	1 cut(s)	1269
Bst2UI	CCWGG	8 cut(s)	125, 326, 519, 611, 1145, 1158, 1509, 1878
Bst4CI	ACNGT	5 cut(s)	256, 581, 1311, 2314, 2412
Bst6I	CTCTTC	7 cut(s)	293, 749, 1179, 1552, 1982, 2361, 2448
BstACI	GRCGYC	2 cut(s)	551, 797
BstBAI	YACGTR	3 cut(s)	1133, 1889, 2300
BstBI	TTCGAA	2 cut(s)	146, 250
BstC8I	GCNNGC	8 cut(s)	271, 359, 363, 572, 706, 906, 1581, 2432
BstDEI	CTNAG	6 cut(s)	590, 663, 942, 1486, 2118, 2334
BstDSI	CCRYGG	2 cut(s)	82, 238
BstENI	CCTNNNNNAGG	1 cut(s)	1161
BstF5I	GGATG	2 cut(s)	1432, 2188
BstFNI	CGCG	1 cut(s)	1476
BstHHI	GCGC	1 cut(s)	1478
BstKTI	GATC	6 cut(s)	1282, 1522, 1666, 1919, 2218, 2236
BstMAI	GTCTC	2 cut(s)	2062, 2445
BstMBI	GATC	6 cut(s)	1279, 1519, 1663, 1916, 2215, 2233
BstMCI	CGRYCG	2 cut(s)	12, 193
BstNI	CCWGG	8 cut(s)	125, 326, 519, 611, 1145, 1158, 1509, 1878
BstNSI	RCATGY	1 cut(s)	1583
BstSFI	CTRYAG	2 cut(s)	1815, 2154
BstSLI	GKGCMC	2 cut(s)	1212, 2071
BstUI	CGCG	1 cut(s)	1476
BstV1I	GCAGC	5 cut(s)	114, 448, 1678, 2039, 2250
BstV2I	GAAGAC	4 cut(s)	1145, 1714, 1790, 1862
BstX2I	RGATCY	2 cut(s)	1279, 1663
BstXI	CCANNNNNNTGG	1 cut(s)	1189
BstYI	RGATCY	2 cut(s)	1279, 1663
BstZI	CGGCCG	1 cut(s)	190
BsuRI	GGCC	7 cut(s)	192, 225, 324, 517, 728, 781, 2145
BtgI	CCRYGG	2 cut(s)	82, 238
BtrI	CACGTC	1 cut(s)	2024
BtsCI	GGATG	2 cut(s)	1432, 2188
BtsIMutI	CAGTG	3 cut(s)	586, 1416, 1644
Cac8I	GCNNGC	8 cut(s)	271, 359, 363, 572, 706, 906, 1581, 2432
CaiI	CAGNNNCTG	1 cut(s)	2117
CfoI	GCGC	1 cut(s)	1478
Cfr10I	RCCGGY	2 cut(s)	361, 953
Cfr13I	GGNCC	2 cut(s)	322, 2144
Cfr9I	CCCGGG	2 cut(s)	533, 1290
CseI	GACGC	3 cut(s)	11, 559, 805
CsiI	ACCWGGT	1 cut(s)	609
Csp6I	GTAC	2 cut(s)	577, 2297
CviAII	CATG	8 cut(s)	83, 502, 641, 1258, 1580, 1829, 1841, 2098
CviQI	GTAC	2 cut(s)	577, 2297
DdeI	CTNAG	6 cut(s)	590, 663, 942, 1486, 2118, 2334
DpnI	GATC	6 cut(s)	1281, 1521, 1665, 1918, 2217, 2235
DpnII	GATC	6 cut(s)	1279, 1519, 1663, 1916, 2215, 2233
EaeI	YGGCCR	1 cut(s)	190
EagI	CGGCCG	1 cut(s)	190
Eam1104I	CTCTTC	7 cut(s)	293, 749, 1179, 1552, 1982, 2361, 2448
EarI	CTCTTC	7 cut(s)	293, 749, 1179, 1552, 1982, 2361, 2448
EciI	GGCGGA	1 cut(s)	873
Ecl136II	GAGCTC	1 cut(s)	357
EclXI	CGGCCG	1 cut(s)	190
Eco130I	CCWWGG	4 cut(s)	82, 729, 1182, 1621
Eco147I	AGGCCT	1 cut(s)	728
Eco24I	GRGCYC	2 cut(s)	359, 986
Eco32I	GATATC	1 cut(s)	790
Eco52I	CGGCCG	1 cut(s)	190
Eco53kI	GAGCTC	1 cut(s)	357
Eco72I	CACGTG	2 cut(s)	1133, 1889
Eco88I	CYCGRG	2 cut(s)	533, 1290
EcoICRI	GAGCTC	1 cut(s)	357
EcoNI	CCTNNNNNAGG	1 cut(s)	1161
EcoRI	GAATTC	2 cut(s)	58, 522
EcoRII	CCWGG	8 cut(s)	123, 324, 517, 609, 1143, 1156, 1507, 1876
EcoRV	GATATC	1 cut(s)	790
EcoT14I	CCWWGG	4 cut(s)	82, 729, 1182, 1621
EcoT38I	GRGCYC	2 cut(s)	359, 986
ErhI	CCWWGG	4 cut(s)	82, 729, 1182, 1621
FaeI	CATG	8 cut(s)	86, 505, 644, 1261, 1583, 1832, 1844, 2101
FalI	AAGNNNNNCTT	2 cut(s)	2427, 2459
FaqI	GGGAC	2 cut(s)	1174, 1867
FatI	CATG	8 cut(s)	82, 501, 640, 1257, 1579, 1828, 1840, 2097
FauI	CCCGC	2 cut(s)	351, 413
FblI	GTMKAC	2 cut(s)	1504, 1617
Fnu4HI	GCNGC	9 cut(s)	79, 103, 190, 223, 377, 437, 1692, 2028, 2264
FokI	GGATG	2 cut(s)	1439, 2195
FriOI	GRGCYC	2 cut(s)	359, 986
Fsp4HI	GCNGC	9 cut(s)	79, 103, 190, 223, 377, 437, 1692, 2028, 2264
FspBI	CTAG	2 cut(s)	1067, 1230
GlaI	GCGC	1 cut(s)	1477
GluI	GCNGC	9 cut(s)	79, 103, 190, 223, 377, 437, 1692, 2028, 2264
GsaI	CCCAGC	2 cut(s)	1197, 1496
GsuI	CTGGAG	1 cut(s)	250
HaeIII	GGCC	7 cut(s)	192, 225, 324, 517, 728, 781, 2145
HapII	CCGG	8 cut(s)	291, 362, 514, 534, 842, 954, 1291, 1544
HgaI	GACGC	3 cut(s)	11, 559, 805
HhaI	GCGC	1 cut(s)	1478
Hin1I	GRCGYC	2 cut(s)	551, 797
Hin1II	CATG	8 cut(s)	86, 505, 644, 1261, 1583, 1832, 1844, 2101
Hin6I	GCGC	1 cut(s)	1476
HinP1I	GCGC	1 cut(s)	1476
HincII	GTYRAC	1 cut(s)	1505
HindII	GTYRAC	1 cut(s)	1505
HindIII	AAGCTT	1 cut(s)	2256
HpaII	CCGG	8 cut(s)	291, 362, 514, 534, 842, 954, 1291, 1544
HphI	GGTGA	3 cut(s)	683, 1637, 1693
Hpy166II	GTNNAC	7 cut(s)	334, 766, 934, 1505, 1618, 1997, 2069
Hpy188III	TCNNGA	7 cut(s)	229, 278, 716, 793, 865, 1097, 1920
Hpy8I	GTNNAC	7 cut(s)	334, 766, 934, 1505, 1618, 1997, 2069
Hpy99I	CGWCG	7 cut(s)	10, 319, 562, 754, 775, 1506, 2088
HpyAV	CCTTC	7 cut(s)	174, 613, 1222, 1804, 2205, 2347, 2354
HpyCH4III	ACNGT	5 cut(s)	256, 581, 1311, 2314, 2412
HpyCH4IV	ACGT	7 cut(s)	173, 560, 1132, 1888, 1999, 2023, 2299
HpyF3I	CTNAG	6 cut(s)	590, 663, 942, 1486, 2118, 2334
HpySE526I	ACGT	7 cut(s)	173, 560, 1132, 1888, 1999, 2023, 2299
Hsp92I	GRCGYC	2 cut(s)	551, 797
Hsp92II	CATG	8 cut(s)	86, 505, 644, 1261, 1583, 1832, 1844, 2101
HspAI	GCGC	1 cut(s)	1476
KroI	GCCGGC	1 cut(s)	361
KroNI	GCCGGC	1 cut(s)	363
Kzo9I	GATC	6 cut(s)	1279, 1519, 1663, 1916, 2215, 2233
LguI	GCTCTTC	2 cut(s)	293, 2361
LmnI	GCTCC	6 cut(s)	234, 516, 541, 751, 1063, 1463
Lsp1109I	GCAGC	5 cut(s)	114, 448, 1678, 2039, 2250
LweI	GCATC	4 cut(s)	801, 1010, 1327, 2233
MabI	ACCWGGT	1 cut(s)	609
MaeI	CTAG	2 cut(s)	1067, 1230
MaeII	ACGT	7 cut(s)	173, 560, 1132, 1888, 1999, 2023, 2299
MaeIII	GTNAC	7 cut(s)	169, 474, 528, 605, 1625, 1669, 2005
MalI	GATC	6 cut(s)	1281, 1521, 1665, 1918, 2217, 2235
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	6 cut(s)	1279, 1519, 1663, 1916, 2215, 2233
MfeI	CAATTG	1 cut(s)	479
MflI	RGATCY	2 cut(s)	1279, 1663
MhlI	GDGCHC	7 cut(s)	359, 986, 1123, 1212, 2071, 2203, 2335
MlyI	GAGTC	4 cut(s)	394, 1165, 2195, 2447
MmeI	TCCRAC	4 cut(s)	50, 519, 773, 1976
MroNI	GCCGGC	1 cut(s)	361
MroXI	GAANNNNTTC	1 cut(s)	1086
MseI	TTAA	6 cut(s)	600, 651, 1763, 2253, 2384, 2470
MslI	CAYNNNNRTG	1 cut(s)	1421
MspA1I	CMGCKG	1 cut(s)	2338
MspI	CCGG	8 cut(s)	291, 362, 514, 534, 842, 954, 1291, 1544
MunI	CAATTG	1 cut(s)	479
MvaI	CCWGG	8 cut(s)	125, 326, 519, 611, 1145, 1158, 1509, 1878
MvnI	CGCG	1 cut(s)	1476
NaeI	GCCGGC	1 cut(s)	363
NciI	CCSGG	5 cut(s)	292, 534, 535, 1291, 1292
NcoI	CCATGG	1 cut(s)	82
NdeII	GATC	6 cut(s)	1279, 1519, 1663, 1916, 2215, 2233
NgoMIV	GCCGGC	1 cut(s)	361
NlaIII	CATG	8 cut(s)	86, 505, 644, 1261, 1583, 1832, 1844, 2101
NlaIV	GGNNCC	7 cut(s)	129, 236, 543, 747, 926, 1264, 1308
NmeAIII	GCCGAG	3 cut(s)	131, 218, 570
NmuCI	GTSAC	2 cut(s)	169, 1625
NspI	RCATGY	1 cut(s)	1583
NspV	TTCGAA	2 cut(s)	146, 250
PaeI	GCATGC	1 cut(s)	1583
PceI	AGGCCT	1 cut(s)	728
PciSI	GCTCTTC	2 cut(s)	293, 2361
PcsI	WCGNNNNNNNCGW	3 cut(s)	557, 1129, 1925
PdiI	GCCGGC	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	1086
PfeI	GAWTC	8 cut(s)	93, 287, 465, 719, 861, 1093, 1405, 1567
PflMI	CCANNNNNTGG	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	1876
PkrI	GCNGC	9 cut(s)	80, 104, 191, 224, 378, 438, 1693, 2029, 2265
PleI	GAGTC	4 cut(s)	393, 1165, 2194, 2446
PmaCI	CACGTG	2 cut(s)	1133, 1889
PmlI	CACGTG	2 cut(s)	1133, 1889
PpsI	GAGTC	4 cut(s)	393, 1165, 2194, 2446
Ppu21I	YACGTR	3 cut(s)	1133, 1889, 2300
PshBI	ATTAAT	2 cut(s)	600, 1763
Psp124BI	GAGCTC	1 cut(s)	359
Psp6I	CCWGG	8 cut(s)	123, 324, 517, 609, 1143, 1156, 1507, 1876
PspCI	CACGTG	2 cut(s)	1133, 1889
PspFI	CCCAGC	2 cut(s)	1193, 1492
PspGI	CCWGG	8 cut(s)	123, 324, 517, 609, 1143, 1156, 1507, 1876
PspN4I	GGNNCC	7 cut(s)	129, 236, 543, 747, 926, 1264, 1308
PspPI	GGNCC	2 cut(s)	322, 2144
PstNI	CAGNNNCTG	1 cut(s)	2117
PsuI	RGATCY	2 cut(s)	1279, 1663
PvuII	CAGCTG	1 cut(s)	2338
RsaI	GTAC	2 cut(s)	578, 2298
RsaNI	GTAC	2 cut(s)	577, 2297
RseI	CAYNNNNRTG	1 cut(s)	1421
SacI	GAGCTC	1 cut(s)	359
SalI	GTCGAC	1 cut(s)	1503
SapI	GCTCTTC	2 cut(s)	293, 2361
SaqAI	TTAA	6 cut(s)	600, 651, 1763, 2253, 2384, 2470
SatI	GCNGC	9 cut(s)	79, 103, 190, 223, 377, 437, 1692, 2028, 2264
Sau3AI	GATC	6 cut(s)	1279, 1519, 1663, 1916, 2215, 2233
Sau96I	GGNCC	2 cut(s)	322, 2144
SchI	GAGTC	4 cut(s)	394, 1165, 2195, 2447
SduI	GDGCHC	7 cut(s)	359, 986, 1123, 1212, 2071, 2203, 2335
SexAI	ACCWGGT	1 cut(s)	609
SfaNI	GCATC	4 cut(s)	801, 1010, 1327, 2233
SfcI	CTRYAG	2 cut(s)	1815, 2154
SfuI	TTCGAA	2 cut(s)	146, 250
SmaI	CCCGGG	2 cut(s)	535, 1292
SmiMI	CAYNNNNRTG	1 cut(s)	1421
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
SphI	GCATGC	1 cut(s)	1583
SrfI	GCCCGGGC	1 cut(s)	1292
SseBI	AGGCCT	1 cut(s)	728
SspI	AATATT	1 cut(s)	1320
SspMI	CTAG	2 cut(s)	1067, 1230
SstI	GAGCTC	1 cut(s)	359
StuI	AGGCCT	1 cut(s)	728
StyI	CCWWGG	4 cut(s)	82, 729, 1182, 1621
TaaI	ACNGT	5 cut(s)	256, 581, 1311, 2314, 2412
TaiI	ACGT	7 cut(s)	176, 563, 1135, 1891, 2002, 2026, 2302
TaqI	TCGA	8 cut(s)	12, 110, 146, 250, 353, 388, 413, 1504
TaqII	GACCGA	1 cut(s)	157
TauI	GCSGC	4 cut(s)	81, 192, 225, 379
TfiI	GAWTC	8 cut(s)	93, 287, 465, 719, 861, 1093, 1405, 1567
Tru1I	TTAA	6 cut(s)	600, 651, 1763, 2253, 2384, 2470
Tru9I	TTAA	6 cut(s)	600, 651, 1763, 2253, 2384, 2470
TscAI	CASTG	3 cut(s)	586, 1423, 1651
TseFI	GTSAC	2 cut(s)	169, 1625
TseI	GCWGC	5 cut(s)	102, 436, 1691, 2027, 2263
Tsp45I	GTSAC	2 cut(s)	169, 1625
TspDTI	ATGAA	6 cut(s)	629, 1204, 1701, 1845, 1969, 2410
TspGWI	ACGGA	6 cut(s)	195, 255, 332, 516, 1358, 2420
TspMI	CCCGGG	2 cut(s)	533, 1290
TspRI	CASTG	3 cut(s)	586, 1423, 1651
Van91I	CCANNNNNTGG	1 cut(s)	88
VneI	GTGCAC	1 cut(s)	2067
VspI	ATTAAT	2 cut(s)	600, 1763
XagI	CCTNNNNNAGG	1 cut(s)	1161
XapI	RAATTY	6 cut(s)	58, 522, 1082, 1364, 1675, 2036
XceI	RCATGY	1 cut(s)	1583
XmaI	CCCGGG	2 cut(s)	533, 1290
XmiI	GTMKAC	2 cut(s)	1504, 1617
XmnI	GAANNNNTTC	1 cut(s)	1086
XspI	CTAG	2 cut(s)	1067, 1230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.