pycom03g14530

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0004984
Physical Location & Seq
Forward (+)
15870085 .. 15872336
2252 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1200 bp
ATGGATCCACCCCTGAACGCCGAACCCACTCAGCTGCCCCCGCCGGCGGTCTCAATTGGGGAAAAGAGGCCGATTGAGAATGGAGGAGAAGGAGATTTGGGGACCCAGTTGAACAAGAAGCCCAGATTGGGACCCAATTCGGAGAAGGATCTGAGGAGAGTGGCGGAGATTGTTCTGGCCTTGTCAACCATGGCCAAGATCCGAGGGGGGAAGAAGCCCACGGAGCCGGAGATTGGGCTTATGGGGGAAGCTAGGTCGAAGCTGGTGGAGCTGTGTGAAGGTTTGGCGCCTAAGGATATTGTGGGCAGGGATGCAATTGGCGCTGTGATTGAGGATTTGGGGCTTAATGCTAAGCTTAAGGAACAGAGATTAGGGTTCCGGGGTCCCAAGTTGACGATTTCCGAGAAGTTTTCACAGACGAAGAGGAAGATGGAAGAATCCAAGAAATTCTCTGCACAAGCTCAACCTGCTGCACATCCATCTCACCCATTAAAAACAAGCTTAAATGCAGCGGCTGAAACCCATGGGATGCCACATAACGTTCATATGATTCCTACAAGCAAACCAAGTCATGCACCAATTTCCTCGGGAGGTTTCCCCGTTTCTCCATCTCTTTTTCATGCGTCTACGGCAACTCCCTCACCTACACAGTATCAGTTTCCCAACAATGATGTTAGAGCATCCATGGTGTCTAGTGGTTTTCCTAGTAGTCATCTAGGAAGAGATTCTTCTTCCCCAACGGTGCCTAAAGTTGAAAGAGCACAGTTCAGATCAGACGGAGGACCAAATGCAAATGCGTCTTCTTATGCATTTCAAGTACAAGCAAATTCGTTTGCAAATCATCCACATCCACCAGTGAATTCTCCAGCTTGGTCAGTGCAAACTCAATCTGCTAAAAGTGCACCAGAACACAAGGTGCCAAACTATACACCTGTCAAAGTTGACGGAAGTACTGGTATCAGTATGCAACAGATGACTTCTGTAGCTGCGCGGAATCAGAATACTAAACCATTTGTCTCTCAATCAGCTTCTGGAAATCTACCCGTTGTACATCAGCCTTTGCAACAGATGCACTTTGTTAAAACTCCTTCGCTTTCTAATAATCACAATGAAATTGCCAAAGTTATTCAGAAATTATTACAACCACAGCCTCCTGATCGATCCTACATGGATTCCTCCGTCAAGGGATTACATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

400

Amino Acids

42.84

Weight (kDa)

9.6

Isoelectric Point (pI)

55.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7797 PF25073 38 - 94 1.7e-23 Domain of unknown function (DUF7797)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 475
AccB1I GGYRCC 3 cut(s) 286, 742, 916
AccI GTMKAC 1 cut(s) 626
AccII CGCG 1 cut(s) 991
AciI CCGC 5 cut(s) 41, 47, 164, 512, 991
AclI AACGTT 1 cut(s) 540
AclWI GGATC 4 cut(s) 12, 156, 193, 1155
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 3 cut(s) 446, 826, 859
AcyI GRCGYC 1 cut(s) 287
AdeI CACNNNGTG 1 cut(s) 916
AfaI GTAC 3 cut(s) 819, 952, 1050
AfiI CCNNNNNNNGG 3 cut(s) 46, 128, 233
AflII CTTAAG 1 cut(s) 356
AgsI TTSAA 3 cut(s) 112, 755, 815
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
Alw21I GWGCWC 2 cut(s) 763, 904
Alw26I GTCTC 2 cut(s) 55, 1021
Alw44I GTGCAC 1 cut(s) 900
AlwI GGATC 4 cut(s) 12, 156, 193, 1155
AlwNI CAGNNNCTG 2 cut(s) 515, 1031
Ama87I CYCGRG 1 cut(s) 586
AoxI GGCC 3 cut(s) 68, 177, 192
ApaLI GTGCAC 1 cut(s) 900
ApeKI GCWGC 4 cut(s) 34, 470, 509, 986
ApoI RAATTY 3 cut(s) 446, 826, 859
Asp700I GAANNNNTTC 1 cut(s) 724
AspLEI GCGC 3 cut(s) 289, 323, 991
AspS9I GGNCC 4 cut(s) 102, 131, 383, 782
AsuC2I CCSGG 1 cut(s) 380
AsuHPI GGTGA 2 cut(s) 476, 633
AvaI CYCGRG 1 cut(s) 586
AvaII GGWCC 4 cut(s) 102, 131, 383, 782
AxyI CCTNAGG 1 cut(s) 291
BaeGI GKGCMC 1 cut(s) 904
BalI TGGCCA 1 cut(s) 194
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 3 cut(s) 286, 742, 916
BbsI GAAGAC 1 cut(s) 792
Bbv12I GWGCWC 2 cut(s) 763, 904
BbvI GCAGC 4 cut(s) 21, 457, 521, 973
BccI CCATC 3 cut(s) 424, 487, 616
BceAI ACGGC 1 cut(s) 645
BcnI CCSGG 1 cut(s) 380
BcoDI GTCTC 2 cut(s) 55, 1021
BfaI CTAG 4 cut(s) 252, 693, 705, 716
BfmI CTRYAG 1 cut(s) 981
BfoI RGCGCY 2 cut(s) 290, 324
BfrI CTTAAG 1 cut(s) 356
BfuAI ACCTGC 1 cut(s) 475
BisI GCNGC 5 cut(s) 35, 471, 510, 513, 987
BlpI GCTNAGC 1 cut(s) 351
BlsI GCNGC 5 cut(s) 36, 472, 511, 514, 988
BmcAI AGTACT 1 cut(s) 952
Bme1390I CCNGG 1 cut(s) 380
Bme18I GGWCC 4 cut(s) 102, 131, 383, 782
BmeT110I CYCGRG 1 cut(s) 586
BmgT120I GGNCC 4 cut(s) 102, 131, 383, 782
BmrFI CCNGG 1 cut(s) 380
BmrI ACTGGG 1 cut(s) 100
BmsI GCATC 4 cut(s) 301, 519, 689, 1059
BmuI ACTGGG 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 792
BpmI CTGGAG 1 cut(s) 849
Bpu1102I GCTNAGC 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 380
Bsa29I ATCGAT 1 cut(s) 1159
BsaHI GRCGYC 1 cut(s) 287
BsaI GGTCTC 1 cut(s) 55
BsaJI CCNNGG 7 cut(s) 189, 202, 219, 379, 523, 585, 684
BsaXI ACNNNNNCTCC 2 cut(s) 619, 649
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 128, 233
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 3 cut(s) 106, 854, 958
Bse21I CCTNAGG 1 cut(s) 291
BseCI ATCGAT 1 cut(s) 1159
BseDI CCNNGG 7 cut(s) 189, 202, 219, 379, 523, 585, 684
BseGI GGATG 6 cut(s) 316, 475, 534, 680, 841, 847
BseLI CCNNNNNNNGG 3 cut(s) 46, 128, 233
BseMII CTCAG 2 cut(s) 44, 143
BseNI ACTGG 3 cut(s) 106, 854, 958
BseRI GAGGAG 2 cut(s) 99, 169
BseSI GKGCMC 1 cut(s) 904
BseXI GCAGC 4 cut(s) 21, 457, 521, 973
BsgI GTGCAG 2 cut(s) 438, 456
Bsh1236I CGCG 1 cut(s) 991
BshFI GGCC 3 cut(s) 70, 179, 194
BshNI GGYRCC 3 cut(s) 286, 742, 916
BshVI ATCGAT 1 cut(s) 1159
BsiHKAI GWGCWC 2 cut(s) 763, 904
BsiHKCI CYCGRG 1 cut(s) 586
BsiSI CCGG 3 cut(s) 44, 227, 379
BslFI GGGAC 3 cut(s) 115, 144, 369
BslI CCNNNNNNNGG 3 cut(s) 46, 128, 233
BsmAI GTCTC 2 cut(s) 55, 1021
BsmFI GGGAC 3 cut(s) 115, 144, 369
BsnI GGCC 3 cut(s) 70, 179, 194
Bso31I GGTCTC 1 cut(s) 55
BsoBI CYCGRG 1 cut(s) 586
Bsp1286I GDGCHC 2 cut(s) 763, 904
Bsp1407I TGTACA 1 cut(s) 1048
Bsp143I GATC 6 cut(s) 4, 148, 198, 770, 1156, 1160
Bsp1720I GCTNAGC 1 cut(s) 351
Bsp19I CCATGG 3 cut(s) 189, 523, 684
BspACI CCGC 5 cut(s) 41, 47, 164, 512, 991
BspANI GGCC 3 cut(s) 70, 179, 194
BspCNI CTCAG 2 cut(s) 43, 144
BspDI ATCGAT 1 cut(s) 1159
BspFNI CGCG 1 cut(s) 991
BspMI ACCTGC 1 cut(s) 475
BspPI GGATC 4 cut(s) 12, 156, 193, 1155
BspT107I GGYRCC 3 cut(s) 286, 742, 916
BspTI CTTAAG 1 cut(s) 356
BspTNI GGTCTC 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 43
BsrGI TGTACA 1 cut(s) 1048
BsrI ACTGG 3 cut(s) 106, 854, 958
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 7 cut(s) 189, 202, 219, 379, 523, 585, 684
BssMI GATC 6 cut(s) 4, 148, 198, 770, 1156, 1160
BssNI GRCGYC 1 cut(s) 287
BssT1I CCWWGG 3 cut(s) 189, 523, 684
Bst4CI ACNGT 3 cut(s) 651, 742, 765
Bst6I CTCTTC 2 cut(s) 416, 715
BstACI GRCGYC 1 cut(s) 287
BstAFI CTTAAG 1 cut(s) 356
BstAPI GCANNNNNTGC 1 cut(s) 1069
BstAUI TGTACA 1 cut(s) 1048
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 4 cut(s) 30, 152, 291, 351
BstDSI CCRYGG 4 cut(s) 189, 219, 523, 684
BstF5I GGATG 6 cut(s) 316, 475, 534, 680, 841, 847
BstFNI CGCG 1 cut(s) 991
BstH2I RGCGCY 2 cut(s) 290, 324
BstHHI GCGC 3 cut(s) 289, 323, 991
BstKTI GATC 6 cut(s) 7, 151, 201, 773, 1159, 1163
BstMAI GTCTC 2 cut(s) 55, 1021
BstMBI GATC 6 cut(s) 4, 148, 198, 770, 1156, 1160
BstMWI GCNNNNNNNGC 8 cut(s) 40, 223, 268, 320, 467, 629, 899, 1069
BstSCI CCNGG 1 cut(s) 378
BstSFI CTRYAG 1 cut(s) 981
BstSLI GKGCMC 1 cut(s) 904
BstUI CGCG 1 cut(s) 991
BstV1I GCAGC 4 cut(s) 21, 457, 521, 973
BstV2I GAAGAC 1 cut(s) 792
BstX2I RGATCY 3 cut(s) 4, 148, 198
BstYI RGATCY 3 cut(s) 4, 148, 198
Bsu15I ATCGAT 1 cut(s) 1159
Bsu36I CCTNAGG 1 cut(s) 291
BsuRI GGCC 3 cut(s) 70, 179, 194
BsuTUI ATCGAT 1 cut(s) 1159
BtgI CCRYGG 4 cut(s) 189, 219, 523, 684
BtsCI GGATG 6 cut(s) 316, 475, 534, 680, 841, 847
BtsIMutI CAGTG 2 cut(s) 861, 882
BveI ACCTGC 1 cut(s) 475
Cac8I GCNNGC 1 cut(s) 45
CaiI CAGNNNCTG 2 cut(s) 515, 1031
CfoI GCGC 3 cut(s) 289, 323, 991
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 4 cut(s) 102, 131, 383, 782
ClaI ATCGAT 1 cut(s) 1159
CseI GACGC 2 cut(s) 612, 786
Csp6I GTAC 3 cut(s) 818, 951, 1049
CviAII CATG 7 cut(s) 190, 524, 572, 620, 685, 1168, 1193
CviQI GTAC 3 cut(s) 818, 951, 1049
DdeI CTNAG 4 cut(s) 30, 152, 291, 351
DinI GGCGCC 1 cut(s) 288
DpnI GATC 6 cut(s) 6, 150, 200, 772, 1158, 1162
DpnII GATC 6 cut(s) 4, 148, 198, 770, 1156, 1160
DraIII CACNNNGTG 1 cut(s) 916
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 2 cut(s) 416, 715
EarI CTCTTC 2 cut(s) 416, 715
EciI GGCGGA 1 cut(s) 179
Eco130I CCWWGG 3 cut(s) 189, 523, 684
Eco31I GGTCTC 1 cut(s) 55
Eco47I GGWCC 4 cut(s) 102, 131, 383, 782
Eco81I CCTNAGG 1 cut(s) 291
Eco88I CYCGRG 1 cut(s) 586
EcoO109I RGGNCCY 3 cut(s) 102, 131, 383
EcoRI GAATTC 1 cut(s) 859
EcoT14I CCWWGG 3 cut(s) 189, 523, 684
EcoT22I ATGCAT 1 cut(s) 811
EgeI GGCGCC 1 cut(s) 288
EheI GGCGCC 1 cut(s) 288
ErhI CCWWGG 3 cut(s) 189, 523, 684
FaeI CATG 7 cut(s) 193, 527, 575, 623, 688, 1171, 1196
FalI AAGNNNNNCTT 2 cut(s) 712, 744
FaqI GGGAC 3 cut(s) 115, 144, 369
FatI CATG 7 cut(s) 189, 523, 571, 619, 684, 1167, 1192
FauI CCCGC 1 cut(s) 48
FauNDI CATATG 1 cut(s) 546
FblI GTMKAC 1 cut(s) 626
Fnu4HI GCNGC 5 cut(s) 35, 471, 510, 513, 987
FokI GGATG 6 cut(s) 323, 462, 541, 667, 828, 834
Fsp4HI GCNGC 5 cut(s) 35, 471, 510, 513, 987
FspBI CTAG 4 cut(s) 252, 693, 705, 716
GlaI GCGC 3 cut(s) 288, 322, 990
GluI GCNGC 5 cut(s) 35, 471, 510, 513, 987
GsuI CTGGAG 1 cut(s) 849
HaeII RGCGCY 2 cut(s) 290, 324
HaeIII GGCC 3 cut(s) 70, 179, 194
HapII CCGG 3 cut(s) 44, 227, 379
HgaI GACGC 2 cut(s) 612, 786
HhaI GCGC 3 cut(s) 289, 323, 991
Hin1I GRCGYC 1 cut(s) 287
Hin1II CATG 7 cut(s) 193, 527, 575, 623, 688, 1171, 1196
Hin6I GCGC 3 cut(s) 287, 321, 989
HinP1I GCGC 3 cut(s) 287, 321, 989
HincII GTYRAC 3 cut(s) 186, 393, 943
HindII GTYRAC 3 cut(s) 186, 393, 943
HindIII AAGCTT 2 cut(s) 353, 499
HinfI GANTC 5 cut(s) 437, 550, 725, 994, 1172
HpaII CCGG 3 cut(s) 44, 227, 379
HphI GGTGA 2 cut(s) 476, 633
Hpy166II GTNNAC 5 cut(s) 186, 393, 627, 902, 943
Hpy188I TCNGA 8 cut(s) 142, 153, 203, 403, 770, 775, 999, 1131
Hpy188III TCNNGA 3 cut(s) 588, 1032, 1154
Hpy8I GTNNAC 5 cut(s) 186, 393, 627, 902, 943
HpyAV CCTTC 4 cut(s) 83, 139, 272, 1098
HpyCH4III ACNGT 3 cut(s) 651, 742, 765
HpyCH4IV ACGT 1 cut(s) 540
HpyF10VI GCNNNNNNNGC 8 cut(s) 40, 223, 268, 320, 467, 629, 899, 1069
HpyF3I CTNAG 4 cut(s) 30, 152, 291, 351
HpySE526I ACGT 1 cut(s) 540
Hsp92I GRCGYC 1 cut(s) 287
Hsp92II CATG 7 cut(s) 193, 527, 575, 623, 688, 1171, 1196
HspAI GCGC 3 cut(s) 287, 321, 989
KasI GGCGCC 1 cut(s) 286
KflI GGGWCCC 3 cut(s) 102, 131, 383
KroI GCCGGC 1 cut(s) 43
KroNI GCCGGC 1 cut(s) 45
Kzo9I GATC 6 cut(s) 4, 148, 198, 770, 1156, 1160
LmnI GCTCC 2 cut(s) 223, 268
Lsp1109I GCAGC 4 cut(s) 21, 457, 521, 973
LweI GCATC 4 cut(s) 301, 519, 689, 1059
MaeI CTAG 4 cut(s) 252, 693, 705, 716
MaeII ACGT 1 cut(s) 540
MalI GATC 6 cut(s) 6, 150, 200, 772, 1158, 1162
MboI GATC 6 cut(s) 4, 148, 198, 770, 1156, 1160
MboII GAAGA 8 cut(s) 223, 433, 439, 446, 720, 723, 732, 792
MfeI CAATTG 2 cut(s) 54, 315
MflI RGATCY 3 cut(s) 4, 148, 198
MhlI GDGCHC 2 cut(s) 763, 904
MlsI TGGCCA 1 cut(s) 194
MluCI AATT 9 cut(s) 54, 136, 315, 446, 579, 826, 859, 1113, 1133
MluNI TGGCCA 1 cut(s) 194
Mly113I GGCGCC 1 cut(s) 287
Mox20I TGGCCA 1 cut(s) 194
Mph1103I ATGCAT 1 cut(s) 811
MreI CGCCGGCG 1 cut(s) 43
MroNI GCCGGC 1 cut(s) 43
MroXI GAANNNNTTC 1 cut(s) 724
MscI TGGCCA 1 cut(s) 194
MseI TTAA 5 cut(s) 345, 357, 491, 503, 1080
Msp20I TGGCCA 1 cut(s) 194
MspA1I CMGCKG 2 cut(s) 34, 512
MspCI CTTAAG 1 cut(s) 356
MspI CCGG 3 cut(s) 44, 227, 379
MspR9I CCNGG 1 cut(s) 380
MunI CAATTG 2 cut(s) 54, 315
MvnI CGCG 1 cut(s) 991
MwoI GCNNNNNNNGC 8 cut(s) 40, 223, 268, 320, 467, 629, 899, 1069
NaeI GCCGGC 1 cut(s) 45
NarI GGCGCC 1 cut(s) 287
NciI CCSGG 1 cut(s) 380
NcoI CCATGG 3 cut(s) 189, 523, 684
NdeI CATATG 1 cut(s) 546
NdeII GATC 6 cut(s) 4, 148, 198, 770, 1156, 1160
NgoMIV GCCGGC 1 cut(s) 43
NlaIII CATG 7 cut(s) 193, 527, 575, 623, 688, 1171, 1196
NsiI ATGCAT 1 cut(s) 811
PdiI GCCGGC 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 724
PfeI GAWTC 5 cut(s) 437, 550, 725, 994, 1172
PkrI GCNGC 5 cut(s) 36, 472, 511, 514, 988
PluTI GGCGCC 1 cut(s) 290
PpuMI RGGWCCY 3 cut(s) 102, 131, 383
Psp1406I AACGTT 1 cut(s) 540
Psp5II RGGWCCY 3 cut(s) 102, 131, 383
PspPI GGNCC 4 cut(s) 102, 131, 383, 782
PspPPI RGGWCCY 3 cut(s) 102, 131, 383
PstNI CAGNNNCTG 2 cut(s) 515, 1031
PsuI RGATCY 3 cut(s) 4, 148, 198
PvuII CAGCTG 1 cut(s) 34
RsaI GTAC 3 cut(s) 819, 952, 1050
RsaNI GTAC 3 cut(s) 818, 951, 1049
SaqAI TTAA 5 cut(s) 345, 357, 491, 503, 1080
SatI GCNGC 5 cut(s) 35, 471, 510, 513, 987
Sau3AI GATC 6 cut(s) 4, 148, 198, 770, 1156, 1160
Sau96I GGNCC 4 cut(s) 102, 131, 383, 782
ScaI AGTACT 1 cut(s) 952
ScrFI CCNGG 1 cut(s) 380
SduI GDGCHC 2 cut(s) 763, 904
SfaNI GCATC 4 cut(s) 301, 519, 689, 1059
SfcI CTRYAG 1 cut(s) 981
SfoI GGCGCC 1 cut(s) 288
SgrAI CRCCGGYG 1 cut(s) 43
SinI GGWCC 4 cut(s) 102, 131, 383, 782
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 9 cut(s) 54, 136, 315, 446, 579, 826, 859, 1113, 1133
SsiI CCGC 5 cut(s) 41, 47, 164, 512, 991
SspDI GGCGCC 1 cut(s) 286
SspMI CTAG 4 cut(s) 252, 693, 705, 716
StyD4I CCNGG 1 cut(s) 378
StyI CCWWGG 3 cut(s) 189, 523, 684
TaaI ACNGT 3 cut(s) 651, 742, 765
TaiI ACGT 1 cut(s) 543
TaqI TCGA 2 cut(s) 257, 1159
TasI AATT 9 cut(s) 54, 136, 315, 446, 579, 826, 859, 1113, 1133
TatI WGTACW 3 cut(s) 817, 950, 1048
TauI GCSGC 1 cut(s) 515
TfiI GAWTC 5 cut(s) 437, 550, 725, 994, 1172
Tru1I TTAA 5 cut(s) 345, 357, 491, 503, 1080
Tru9I TTAA 5 cut(s) 345, 357, 491, 503, 1080
TscAI CASTG 2 cut(s) 861, 882
TseI GCWGC 4 cut(s) 34, 470, 509, 986
TspDTI ATGAA 3 cut(s) 533, 608, 1125
TspGWI ACGGA 4 cut(s) 236, 792, 960, 1168
TspRI CASTG 2 cut(s) 861, 882
Vha464I CTTAAG 1 cut(s) 356
VneI GTGCAC 1 cut(s) 900
VpaK11BI GGWCC 4 cut(s) 102, 131, 383, 782
XapI RAATTY 3 cut(s) 446, 826, 859
XmiI GTMKAC 1 cut(s) 626
XmnI GAANNNNTTC 1 cut(s) 724
XspI CTAG 4 cut(s) 252, 693, 705, 716
ZrmI AGTACT 1 cut(s) 952
Zsp2I ATGCAT 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.