pycom03g14540

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0004984
Physical Location & Seq
Forward (+)
15872425 .. 15875010
2586 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1668 bp
ATGTGTGCACAGTCATCTAACCAGAGAGGAATTCCTAGAGGTGAGTGGCACTGCATGAGATGCCTGTCACTGAGCAATGGAAAGCCCTTGCCTCCGAAGTATGGACGTGTGATGAGAAGTAATATACAAGTAAAAGTTCCTTCTAACACAGCTGGAATTCAAACGTCCTTGGAGAATAAACTGGAAAATTTAGATCCAAGGGTCAACCAGCCGAAGATAGCTGCAAATGGAAGTTCTGTTTTGCAGAATACTGCTGGTATAGGTGGTGGGAGCAGCAATCACATTGAGTCAGCACCAGATCTAAAGATTTTAACTGCAAAAGAATCTCAACGGAAGAATCTCGTATCAAGCAGTAAAAATAGGGATGAGAAACCTCTTTCTGGAAGTTACCCGTCAAGTGAAAGATCTGAGGAGAAATGTTCTGAATCAGACCCTCATTCTGAACCAAAAGAAACTACTGAATCATCTAGAGTTGAAGATTCTGAATCAATTGCAGAATCTCCTGCTGAGTCAAAACCTCCTCTTGAACCAAAAGAAACTACTGAATCATCTGGAGTTGAAGAGAGACCTTCTGAATCAAAAGCAGAACCTGCTGCTGAATCAAAAGCGGAGTGCCCTGCTGAATCAAAAGCAGAGCCTACTGCTGAACCAAAAGAAACTACTGGATCATTTAGAGTTGAAGAGATACCTGGATCAAAAGCAGAACATCCTTCTGAATCAAAAGCGGAGCTTCCTGCTGAATCAAAAGCAGAGCCTCTTGCTGAACCAAAAGAAACTACTGAATCATCTAGAGTTGAAGAGAGACCTTCTGATTCAAAAGCAGAGCCTCCTGTTGAACCAAAAGAAACTACTGAACCATCTAGAGTTGAAGAGATACATTTTGAATCAAAACCAGAAGCTTCTGCTGATTTTTCCAACAAAGATACTGATAAGTCCGATCATTCCCAACCCCCTTCCAACACACAAGTTGTGGACGGTGCTGGGCTGCCCAACTCTTCAGAAGTTCCATCAATGATATTCCATGACCAGAATTCTGCATTGGAAGACTCAGATACTTCTCACTCTGTAGGAAACTCTGGCTCCTCTTTAAGATATGACATCAAACGGAATGACCAAAGTGGTGCACAAGCAAATACTTGTGAAATTTCTGTAGCTAGTGGTAGGTCTCTAGAGCATTTCGGTTTTTCTTCAGATGGCTTGAAAGCTGTTCAATGGATTGGCGATGCAGTTCAAGGTGGTGATGAAAAAATATATTACCATACTTGTTGCATTGATGGGGTAACATATCAACTGCGAGATCATGCTCTTTTCCAGTCTAGTCATGGAAAATTGATACCCTCGAAGCTTCAGTCCATGTGGGAGGATAGAAAAACTGGGTCAAAGTGGGCTATTGTCAACAGGTGCTACTTTCCTGGTGACTTACCAGAGAACGTTGGTCGCCCATCTACACCTGAAAGCAATGAGGTCTATGAGTCTAATCATGATAGCAATGTAATGGCTGGTTTGATTCGTGGTCCTTGTGAAGTTCTTTCTCCTGCTAAGTTCAGTGTAGAAACTGAAAGACGGAGCCAGTTAGGACATGAGGCAGATAATGAATTACAACCAATCTTCCTCTGCAAATGGATTTATGATGAGTTTAAAGGGGTATTGGAGCCTGTTCCCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

556

Amino Acids

60.49

Weight (kDa)

4.96

Isoelectric Point (pI)

60.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 448 - 554 2.8e-10 BAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 598
AciI CCGC 2 cut(s) 608, 725
AclI AACGTT 1 cut(s) 1431
AclWI GGATC 3 cut(s) 188, 673, 700
AcsI RAATTY 5 cut(s) 30, 156, 187, 1030, 1143
AcuI CTGAAG 3 cut(s) 981, 1173, 1331
AfiI CCNNNNNNNGG 2 cut(s) 101, 380
AflIII ACRYGT 1 cut(s) 106
AjiI CACGTC 1 cut(s) 107
AjnI CCWGG 2 cut(s) 688, 1411
AjuI GAANNNNNNNTTGG 2 cut(s) 1022, 1054
AluBI AGCT 7 cut(s) 152, 221, 730, 899, 1154, 1205, 1345
AluI AGCT 7 cut(s) 152, 221, 730, 899, 1154, 1205, 1345
Alw21I GWGCWC 2 cut(s) 10, 1126
Alw26I GTCTC 3 cut(s) 559, 796, 1170
Alw44I GTGCAC 2 cut(s) 6, 1122
AlwI GGATC 3 cut(s) 188, 673, 700
AlwNI CAGNNNCTG 1 cut(s) 590
Ama87I CYCGRG 1 cut(s) 1661
ApaLI GTGCAC 2 cut(s) 6, 1122
ApeKI GCWGC 4 cut(s) 221, 273, 593, 985
ApoI RAATTY 5 cut(s) 30, 156, 187, 1030, 1143
ArsI GACNNNNNNTTYG 2 cut(s) 1334, 1366
AspS9I GGNCC 1 cut(s) 1514
AsuHPI GGTGA 3 cut(s) 53, 1250, 1427
AvaI CYCGRG 1 cut(s) 1661
AvaII GGWCC 1 cut(s) 1514
BaeGI GKGCMC 3 cut(s) 10, 617, 1126
BbsI GAAGAC 1 cut(s) 1050
Bbv12I GWGCWC 2 cut(s) 10, 1126
BbvI GCAGC 4 cut(s) 208, 285, 580, 972
BccI CCATC 5 cut(s) 865, 1015, 1187, 1268, 1450
BciT130I CCWGG 2 cut(s) 690, 1413
BcoDI GTCTC 3 cut(s) 559, 796, 1170
BfaI CTAG 7 cut(s) 36, 468, 789, 861, 1155, 1169, 1317
BfmI CTRYAG 2 cut(s) 1065, 1149
BfuAI ACCTGC 1 cut(s) 598
BglII AGATCT 2 cut(s) 298, 404
BisI GCNGC 4 cut(s) 222, 274, 594, 986
BlsI GCNGC 4 cut(s) 223, 275, 595, 987
Bme1390I CCNGG 2 cut(s) 690, 1413
Bme18I GGWCC 1 cut(s) 1514
BmeT110I CYCGRG 1 cut(s) 1661
BmgBI CACGTC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 1514
BmiI GGNNCC 3 cut(s) 1081, 1568, 1653
BmrFI CCNGG 2 cut(s) 690, 1413
BmrI ACTGGG 1 cut(s) 1383
BmsI GCATC 2 cut(s) 50, 1213
BmuI ACTGGG 1 cut(s) 1383
BpiI GAAGAC 1 cut(s) 1050
BpmI CTGGAG 1 cut(s) 573
BsaI GGTCTC 3 cut(s) 559, 796, 1170
BsaJI CCNNGG 2 cut(s) 168, 197
BsaXI ACNNNNNCTCC 2 cut(s) 1064, 1094
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 380
Bse1I ACTGG 5 cut(s) 186, 667, 1312, 1378, 1570
Bse3DI GCAATG 3 cut(s) 82, 1465, 1495
BseBI CCWGG 2 cut(s) 690, 1413
BseDI CCNNGG 2 cut(s) 168, 197
BseGI GGATG 2 cut(s) 370, 706
BseLI CCNNNNNNNGG 2 cut(s) 101, 380
BseMI GCAATG 3 cut(s) 82, 1465, 1495
BseMII CTCAG 4 cut(s) 62, 399, 498, 1062
BseNI ACTGG 5 cut(s) 186, 667, 1312, 1378, 1570
BseRI GAGGAG 3 cut(s) 425, 510, 1072
BseSI GKGCMC 3 cut(s) 10, 617, 1126
BseXI GCAGC 4 cut(s) 208, 285, 580, 972
BseYI CCCAGC 1 cut(s) 980
BsiHKAI GWGCWC 2 cut(s) 10, 1126
BsiHKCI CYCGRG 1 cut(s) 1661
BslI CCNNNNNNNGG 2 cut(s) 101, 380
BsmAI GTCTC 3 cut(s) 559, 796, 1170
Bso31I GGTCTC 3 cut(s) 559, 796, 1170
BsoBI CYCGRG 1 cut(s) 1661
Bsp1286I GDGCHC 3 cut(s) 10, 617, 1126
Bsp143I GATC 7 cut(s) 193, 298, 404, 665, 692, 937, 1297
BspACI CCGC 2 cut(s) 608, 725
BspCNI CTCAG 4 cut(s) 63, 400, 499, 1061
BspHI TCATGA 1 cut(s) 1480
BspLI GGNNCC 3 cut(s) 1081, 1568, 1653
BspMI ACCTGC 1 cut(s) 598
BspPI GGATC 3 cut(s) 188, 673, 700
BspTNI GGTCTC 3 cut(s) 559, 796, 1170
BsrDI GCAATG 3 cut(s) 82, 1465, 1495
BsrI ACTGG 5 cut(s) 186, 667, 1312, 1378, 1570
BssECI CCNNGG 2 cut(s) 168, 197
BssMI GATC 7 cut(s) 193, 298, 404, 665, 692, 937, 1297
BssT1I CCWWGG 2 cut(s) 168, 197
Bst2UI CCWGG 2 cut(s) 690, 1413
Bst4CI ACNGT 2 cut(s) 12, 977
Bst6I CTCTTC 5 cut(s) 555, 675, 792, 864, 1000
BstAPI GCANNNNNTGC 2 cut(s) 60, 590
BstDEI CTNAG 5 cut(s) 71, 408, 507, 1048, 1539
BstF5I GGATG 2 cut(s) 370, 706
BstKTI GATC 7 cut(s) 196, 301, 407, 668, 695, 940, 1300
BstMAI GTCTC 3 cut(s) 559, 796, 1170
BstMBI GATC 7 cut(s) 193, 298, 404, 665, 692, 937, 1297
BstMWI GCNNNNNNNGC 2 cut(s) 60, 590
BstNI CCWGG 2 cut(s) 690, 1413
BstSCI CCNGG 2 cut(s) 688, 1411
BstSFI CTRYAG 2 cut(s) 1065, 1149
BstSLI GKGCMC 3 cut(s) 10, 617, 1126
BstV1I GCAGC 4 cut(s) 208, 285, 580, 972
BstV2I GAAGAC 1 cut(s) 1050
BstX2I RGATCY 3 cut(s) 193, 298, 404
BstYI RGATCY 3 cut(s) 193, 298, 404
BtgZI GCGATG 1 cut(s) 1236
BtrI CACGTC 1 cut(s) 107
BtsCI GGATG 2 cut(s) 370, 706
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 3 cut(s) 49, 68, 1552
BveI ACCTGC 1 cut(s) 598
CaiI CAGNNNCTG 1 cut(s) 590
CciI TCATGA 1 cut(s) 1480
Cfr13I GGNCC 1 cut(s) 1514
CviAII CATG 7 cut(s) 55, 1022, 1301, 1322, 1354, 1481, 1580
DdeI CTNAG 5 cut(s) 71, 408, 507, 1048, 1539
DpnI GATC 7 cut(s) 195, 300, 406, 667, 694, 939, 1299
DpnII GATC 7 cut(s) 193, 298, 404, 665, 692, 937, 1297
DraI TTTAAA 1 cut(s) 1639
Eam1104I CTCTTC 5 cut(s) 555, 675, 792, 864, 1000
EarI CTCTTC 5 cut(s) 555, 675, 792, 864, 1000
Eco130I CCWWGG 2 cut(s) 168, 197
Eco31I GGTCTC 3 cut(s) 559, 796, 1170
Eco47I GGWCC 1 cut(s) 1514
Eco57I CTGAAG 3 cut(s) 981, 1173, 1331
Eco88I CYCGRG 1 cut(s) 1661
EcoRI GAATTC 3 cut(s) 30, 156, 1030
EcoRII CCWGG 2 cut(s) 688, 1411
EcoT14I CCWWGG 2 cut(s) 168, 197
ErhI CCWWGG 2 cut(s) 168, 197
FaeI CATG 7 cut(s) 58, 1025, 1304, 1325, 1357, 1484, 1583
FalI AAGNNNNNCTT 2 cut(s) 714, 746
FatI CATG 7 cut(s) 54, 1021, 1300, 1321, 1353, 1480, 1579
Fnu4HI GCNGC 4 cut(s) 222, 274, 594, 986
FokI GGATG 2 cut(s) 377, 693
Fsp4HI GCNGC 4 cut(s) 222, 274, 594, 986
FspBI CTAG 7 cut(s) 36, 468, 789, 861, 1155, 1169, 1317
GluI GCNGC 4 cut(s) 222, 274, 594, 986
GsaI CCCAGC 1 cut(s) 984
GsuI CTGGAG 1 cut(s) 573
Hin1II CATG 7 cut(s) 58, 1025, 1304, 1325, 1357, 1484, 1583
HincII GTYRAC 2 cut(s) 205, 1396
HindII GTYRAC 2 cut(s) 205, 1396
HindIII AAGCTT 2 cut(s) 897, 1343
HphI GGTGA 3 cut(s) 53, 1250, 1427
Hpy166II GTNNAC 5 cut(s) 8, 205, 973, 1124, 1396
Hpy188III TCNNGA 9 cut(s) 381, 468, 524, 552, 789, 861, 1169, 1481, 1661
Hpy8I GTNNAC 5 cut(s) 8, 205, 973, 1124, 1396
HpyAV CCTTC 5 cut(s) 150, 579, 720, 816, 963
HpyCH4III ACNGT 2 cut(s) 12, 977
HpyCH4IV ACGT 3 cut(s) 106, 164, 1431
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 590
HpyF3I CTNAG 5 cut(s) 71, 408, 507, 1048, 1539
HpySE526I ACGT 3 cut(s) 106, 164, 1431
Hsp92II CATG 7 cut(s) 58, 1025, 1304, 1325, 1357, 1484, 1583
Kzo9I GATC 7 cut(s) 193, 298, 404, 665, 692, 937, 1297
LmnI GCTCC 5 cut(s) 270, 727, 1085, 1566, 1651
Lsp1109I GCAGC 4 cut(s) 208, 285, 580, 972
LweI GCATC 2 cut(s) 50, 1213
MaeI CTAG 7 cut(s) 36, 468, 789, 861, 1155, 1169, 1317
MaeII ACGT 3 cut(s) 106, 164, 1431
MaeIII GTNAC 4 cut(s) 66, 386, 1279, 1415
MalI GATC 7 cut(s) 195, 300, 406, 667, 694, 939, 1299
MboI GATC 7 cut(s) 193, 298, 404, 665, 692, 937, 1297
MfeI CAATTG 1 cut(s) 489
MflI RGATCY 3 cut(s) 193, 298, 404
MhlI GDGCHC 3 cut(s) 10, 617, 1126
MluCI AATT 8 cut(s) 30, 156, 187, 489, 1030, 1143, 1328, 1595
MlyI GAGTC 4 cut(s) 296, 518, 1040, 1481
MmeI TCCRAC 2 cut(s) 939, 981
MseI TTAA 3 cut(s) 311, 1088, 1638
MspA1I CMGCKG 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 690, 1413
MunI CAATTG 1 cut(s) 489
MvaI CCWGG 2 cut(s) 690, 1413
MwoI GCNNNNNNNGC 2 cut(s) 60, 590
NdeII GATC 7 cut(s) 193, 298, 404, 665, 692, 937, 1297
NlaIII CATG 7 cut(s) 58, 1025, 1304, 1325, 1357, 1484, 1583
NlaIV GGNNCC 3 cut(s) 1081, 1568, 1653
NmuCI GTSAC 2 cut(s) 66, 1415
PagI TCATGA 1 cut(s) 1480
PkrI GCNGC 4 cut(s) 223, 275, 595, 987
PleI GAGTC 4 cut(s) 295, 517, 1040, 1480
PpsI GAGTC 4 cut(s) 295, 517, 1040, 1480
Psp1406I AACGTT 1 cut(s) 1431
Psp6I CCWGG 2 cut(s) 688, 1411
PspFI CCCAGC 1 cut(s) 980
PspGI CCWGG 2 cut(s) 688, 1411
PspN4I GGNNCC 3 cut(s) 1081, 1568, 1653
PspPI GGNCC 1 cut(s) 1514
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 3 cut(s) 193, 298, 404
PvuII CAGCTG 1 cut(s) 152
SaqAI TTAA 3 cut(s) 311, 1088, 1638
SatI GCNGC 4 cut(s) 222, 274, 594, 986
Sau3AI GATC 7 cut(s) 193, 298, 404, 665, 692, 937, 1297
Sau96I GGNCC 1 cut(s) 1514
SchI GAGTC 4 cut(s) 296, 518, 1040, 1481
ScrFI CCNGG 2 cut(s) 690, 1413
SduI GDGCHC 3 cut(s) 10, 617, 1126
SfaNI GCATC 2 cut(s) 50, 1213
SfcI CTRYAG 2 cut(s) 1065, 1149
SinI GGWCC 1 cut(s) 1514
Sse9I AATT 8 cut(s) 30, 156, 187, 489, 1030, 1143, 1328, 1595
SsiI CCGC 2 cut(s) 608, 725
SspMI CTAG 7 cut(s) 36, 468, 789, 861, 1155, 1169, 1317
StyD4I CCNGG 2 cut(s) 688, 1411
StyI CCWWGG 2 cut(s) 168, 197
TaaI ACNGT 2 cut(s) 12, 977
TaiI ACGT 3 cut(s) 109, 167, 1434
TaqI TCGA 1 cut(s) 1340
TasI AATT 8 cut(s) 30, 156, 187, 489, 1030, 1143, 1328, 1595
Tru1I TTAA 3 cut(s) 311, 1088, 1638
Tru9I TTAA 3 cut(s) 311, 1088, 1638
TscAI CASTG 3 cut(s) 56, 75, 1552
TseFI GTSAC 2 cut(s) 66, 1415
TseI GCWGC 4 cut(s) 221, 273, 593, 985
Tsp45I GTSAC 2 cut(s) 66, 1415
TspDTI ATGAA 2 cut(s) 1257, 1608
TspGWI ACGGA 3 cut(s) 346, 1120, 1579
TspRI CASTG 3 cut(s) 56, 75, 1552
VneI GTGCAC 2 cut(s) 6, 1122
VpaK11BI GGWCC 1 cut(s) 1514
XapI RAATTY 5 cut(s) 30, 156, 187, 1030, 1143
XbaI TCTAGA 4 cut(s) 467, 788, 860, 1168
XcmI CCANNNNNNNNNTGG 1 cut(s) 1319
XspI CTAG 7 cut(s) 36, 468, 789, 861, 1155, 1169, 1317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.