Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004994

Physical Location & Seq

Genomic Coordinates Reverse (-)

16371626 .. 16373543

Gene Structure 1918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15000.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCAGGCTTTCAAGGCTGCAAATCCTGGTTGTATTTTGGAAGACTTTGTGAGATGGCACTCCCCTCCTGACTGGACAGAGACTGAGCCAATTGATGAGGCTAAAGACTCGTTCGATGGTAGTGATGAATTGTCCACAAGAGGCTATCTCAGTAGCCGAATGCAAAAAGAAGGCAATTTGTGGCGTGAGTTTTGGGATACATCCAAACCAGTTCCAGCGGTTAAACAAGCACCCCTCTTTGATGAGGATTTAGCAGTGGAAGGTATCCTGGATGGTTTTGAGGACATATCACCTTCCGAACTTTTTCAGCAGCTGTTTGTTTCTTTGCTTGGTTTAGGATTTGTAATTGCTGAGGCTAAACTATCCGCGAGCAGTGATTTTTCAAAGCTGTTTTATGAGTGCAAGGAATATGTTGTTTCCACTTGTCAAAGCAGCACGTGGACTGAGAAGGTTGATGAGCTTTGCCAGGTATATGAAACAGTAGAGACTATGTTGGTCAATCCAGAGGAAGCACTAAGAGCAATGAAGCAGCCCGAAGAATCGATGACCCCTTCGGGAGAACCAAAAGGGCGTTTTAGGAGACTTACCCTTAACTTTGGTGGTAAAGACAGACAGTTGAGAAAATCAGGTTCGAAGGACCAGAAAAACTCGAAGAGCCCCGGTAGCCAACCGTTTTCGAGTTTCTTCGACAACAAGTCATCATTATTTTCAAAAAAGCCTCCTAAGCCTGAAAATACATCCCCTGCTGAAAAATCTTCGAATACAGTTGAAAGTGATTGGACGGTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSD Rab3-GTPase_cat

Protein Analysis

264

Amino Acids

29.57

Weight (kDa)

4.78

Isoelectric Point (pI)

51.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55060 AT5G55060 AT5G55060
fragaria_vesca	FvH4_3g23020 FvH4_3g23020 FvH4_3g23020 FvH4_3g23020 FvH4_3g23020 FvH4_3g23020 FvH4_3g23020 FvH4_3g23020 FvH4_3g23020 FvH4_3g23020
malus_domestica	MD03G1198400.v1.1 MD11G1214500.v1.1
prunus_persica	Prupe.4G216600_v2.0.a1 Prupe.4G216600_v2.0.a1
pyrus_communis	pycom03g15000 pycom11g18890
rosa_chinensis	RchiOBHm_Chr5g0040501
rosa_laevigata	RLG00000033984
rosa_multiflora	Rmu_sc0010369.1_g000012
rosa_roxburghii	Rroxscaffold_1G00040150 Rroxscaffold_1G00040880
rosa_rugosa	Rorug05G0185300
rosa_samantha	Rh5BG276200 Rh5CG309100 Rh5DG284700
rosa_wichuraiana	Rw5G015460 Rw5G025490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	368
AciI	CCGC	2 cut(s)	218, 366
AcvI	CACGTG	1 cut(s)	438
AgsI	TTSAA	4 cut(s)	13, 384, 711, 770
AhdI	GACNNNNNGTC	1 cut(s)	694
AjnI	CCWGG	3 cut(s)	25, 267, 465
AluBI	AGCT	3 cut(s)	313, 388, 460
AluI	AGCT	3 cut(s)	313, 388, 460
Alw26I	GTCTC	3 cut(s)	74, 479, 574
AlwNI	CAGNNNCTG	2 cut(s)	83, 313
ApeKI	GCWGC	4 cut(s)	17, 310, 432, 529
Asp700I	GAANNNNTTC	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	637
AsuC2I	CCSGG	1 cut(s)	660
AsuHPI	GGTGA	1 cut(s)	282
AsuII	TTCGAA	2 cut(s)	632, 758
AvaII	GGWCC	1 cut(s)	637
BanII	GRGCYC	1 cut(s)	659
BbrPI	CACGTG	1 cut(s)	438
BbsI	GAAGAC	1 cut(s)	48
BbvCI	CCTCAGC	1 cut(s)	351
BbvI	GCAGC	4 cut(s)	4, 322, 444, 541
BccI	CCATC	3 cut(s)	48, 110, 266
BciT130I	CCWGG	3 cut(s)	27, 269, 467
BciVI	GTATCC	2 cut(s)	190, 275
BcnI	CCSGG	1 cut(s)	660
BcoDI	GTCTC	3 cut(s)	74, 479, 574
BfuI	GTATCC	2 cut(s)	190, 275
BisI	GCNGC	4 cut(s)	18, 311, 433, 530
BlsI	GCNGC	4 cut(s)	19, 312, 434, 531
Bme1390I	CCNGG	4 cut(s)	27, 269, 467, 660
Bme18I	GGWCC	1 cut(s)	637
BmeRI	GACNNNNNGTC	1 cut(s)	694
BmgT120I	GGNCC	1 cut(s)	637
BmrFI	CCNGG	4 cut(s)	27, 269, 467, 660
BpiI	GAAGAC	1 cut(s)	48
BplI	GAGNNNNNCTC	2 cut(s)	132, 164
Bpu10I	CCTNAGC	2 cut(s)	351, 723
Bpu14I	TTCGAA	2 cut(s)	632, 758
BpuMI	CCSGG	1 cut(s)	660
Bsa29I	ATCGAT	1 cut(s)	542
BsaAI	YACGTR	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	658
Bse1I	ACTGG	2 cut(s)	77, 209
Bse3DI	GCAATG	1 cut(s)	528
BseBI	CCWGG	3 cut(s)	27, 269, 467
BseCI	ATCGAT	1 cut(s)	542
BseDI	CCNNGG	1 cut(s)	658
BseGI	GGATG	3 cut(s)	200, 277, 737
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	4 cut(s)	75, 163, 342, 435
BseNI	ACTGG	2 cut(s)	77, 209
BseXI	GCAGC	4 cut(s)	4, 322, 444, 541
Bsh1236I	CGCG	1 cut(s)	368
BshVI	ATCGAT	1 cut(s)	542
BsiSI	CCGG	1 cut(s)	660
BsmAI	GTCTC	3 cut(s)	74, 479, 574
BsmI	GAATGC	1 cut(s)	165
Bsp119I	TTCGAA	2 cut(s)	632, 758
Bsp1286I	GDGCHC	1 cut(s)	659
BspACI	CCGC	2 cut(s)	218, 366
BspCNI	CTCAG	4 cut(s)	76, 162, 343, 436
BspDI	ATCGAT	1 cut(s)	542
BspFNI	CGCG	1 cut(s)	368
BspQI	GCTCTTC	1 cut(s)	647
BspT104I	TTCGAA	2 cut(s)	632, 758
BsrDI	GCAATG	1 cut(s)	528
BsrI	ACTGG	2 cut(s)	77, 209
BssECI	CCNNGG	1 cut(s)	658
Bst2UI	CCWGG	3 cut(s)	27, 269, 467
Bst4CI	ACNGT	5 cut(s)	481, 615, 672, 766, 784
Bst6I	CTCTTC	1 cut(s)	647
BstBAI	YACGTR	1 cut(s)	438
BstBI	TTCGAA	2 cut(s)	632, 758
BstC8I	GCNNGC	2 cut(s)	6, 370
BstDEI	CTNAG	6 cut(s)	84, 149, 351, 444, 515, 723
BstF5I	GGATG	3 cut(s)	200, 277, 737
BstFNI	CGCG	1 cut(s)	368
BstMAI	GTCTC	3 cut(s)	74, 479, 574
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 518, 663, 724
BstNI	CCWGG	3 cut(s)	27, 269, 467
BstSCI	CCNGG	4 cut(s)	25, 267, 465, 658
BstUI	CGCG	1 cut(s)	368
BstV1I	GCAGC	4 cut(s)	4, 322, 444, 541
BstV2I	GAAGAC	1 cut(s)	48
Bsu15I	ATCGAT	1 cut(s)	542
BsuI	GTATCC	2 cut(s)	190, 275
BsuTUI	ATCGAT	1 cut(s)	542
BtsCI	GGATG	3 cut(s)	200, 277, 737
BtsI	GCAGTG	2 cut(s)	261, 379
BtsIMutI	CAGTG	2 cut(s)	261, 379
Cac8I	GCNNGC	2 cut(s)	6, 370
CaiI	CAGNNNCTG	2 cut(s)	83, 313
Cfr13I	GGNCC	1 cut(s)	637
ClaI	ATCGAT	1 cut(s)	542
DdeI	CTNAG	6 cut(s)	84, 149, 351, 444, 515, 723
DriI	GACNNNNNGTC	1 cut(s)	694
Eam1104I	CTCTTC	1 cut(s)	647
Eam1105I	GACNNNNNGTC	1 cut(s)	694
EarI	CTCTTC	1 cut(s)	647
Eco24I	GRGCYC	1 cut(s)	659
Eco47I	GGWCC	1 cut(s)	637
Eco72I	CACGTG	1 cut(s)	438
EcoRII	CCWGG	3 cut(s)	25, 267, 465
EcoT38I	GRGCYC	1 cut(s)	659
FaiI	YATR	6 cut(s)	287, 396, 411, 472, 474, 491
Fnu4HI	GCNGC	4 cut(s)	18, 311, 433, 530
FokI	GGATG	3 cut(s)	187, 284, 724
FriOI	GRGCYC	1 cut(s)	659
Fsp4HI	GCNGC	4 cut(s)	18, 311, 433, 530
GluI	GCNGC	4 cut(s)	18, 311, 433, 530
HapII	CCGG	1 cut(s)	660
HinfI	GANTC	2 cut(s)	107, 539
HpaII	CCGG	1 cut(s)	660
HphI	GGTGA	1 cut(s)	282
Hpy166II	GTNNAC	2 cut(s)	135, 441
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	3 cut(s)	68, 503, 555
Hpy8I	GTNNAC	2 cut(s)	135, 441
HpyAV	CCTTC	6 cut(s)	164, 254, 303, 442, 561, 628
HpyCH4III	ACNGT	5 cut(s)	481, 615, 672, 766, 784
HpyCH4IV	ACGT	1 cut(s)	437
HpyCH4V	TGCA	4 cut(s)	4, 20, 163, 402
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 518, 663, 724
HpyF3I	CTNAG	6 cut(s)	84, 149, 351, 444, 515, 723
HpySE526I	ACGT	1 cut(s)	437
LguI	GCTCTTC	1 cut(s)	647
Lsp1109I	GCAGC	4 cut(s)	4, 322, 444, 541
MaeII	ACGT	1 cut(s)	437
MboII	GAAGA	5 cut(s)	53, 548, 664, 676, 747
MfeI	CAATTG	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	659
MluCI	AATT	4 cut(s)	90, 128, 175, 345
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	9 cut(s)	75, 91, 134, 238, 245, 274, 346, 499, 729
MroXI	GAANNNNTTC	1 cut(s)	303
MseI	TTAA	2 cut(s)	222, 591
MspA1I	CMGCKG	2 cut(s)	218, 313
MspI	CCGG	1 cut(s)	660
MspR9I	CCNGG	4 cut(s)	27, 269, 467, 660
MunI	CAATTG	1 cut(s)	90
Mva1269I	GAATGC	1 cut(s)	165
MvaI	CCWGG	3 cut(s)	27, 269, 467
MvnI	CGCG	1 cut(s)	368
MwoI	GCNNNNNNNGC	4 cut(s)	14, 518, 663, 724
NciI	CCSGG	1 cut(s)	660
NspV	TTCGAA	2 cut(s)	632, 758
PciSI	GCTCTTC	1 cut(s)	647
PctI	GAATGC	1 cut(s)	165
PdmI	GAANNNNTTC	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	539
PfoI	TCCNGGA	1 cut(s)	267
PkrI	GCNGC	4 cut(s)	19, 312, 434, 531
PleI	GAGTC	1 cut(s)	101
PmaCI	CACGTG	1 cut(s)	438
PmlI	CACGTG	1 cut(s)	438
PpsI	GAGTC	1 cut(s)	101
Ppu21I	YACGTR	1 cut(s)	438
Psp6I	CCWGG	3 cut(s)	25, 267, 465
PspCI	CACGTG	1 cut(s)	438
PspGI	CCWGG	3 cut(s)	25, 267, 465
PspPI	GGNCC	1 cut(s)	637
PstNI	CAGNNNCTG	2 cut(s)	83, 313
PvuII	CAGCTG	1 cut(s)	313
SapI	GCTCTTC	1 cut(s)	647
SaqAI	TTAA	2 cut(s)	222, 591
SatI	GCNGC	4 cut(s)	18, 311, 433, 530
Sau96I	GGNCC	1 cut(s)	637
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	4 cut(s)	27, 269, 467, 660
SduI	GDGCHC	1 cut(s)	659
SetI	ASST	9 cut(s)	265, 295, 315, 390, 440, 453, 462, 471, 631
SfuI	TTCGAA	2 cut(s)	632, 758
SinI	GGWCC	1 cut(s)	637
Sse9I	AATT	4 cut(s)	90, 128, 175, 345
SsiI	CCGC	2 cut(s)	218, 366
StyD4I	CCNGG	4 cut(s)	25, 267, 465, 658
TaaI	ACNGT	5 cut(s)	481, 615, 672, 766, 784
TaiI	ACGT	1 cut(s)	440
TaqI	TCGA	7 cut(s)	114, 542, 632, 650, 677, 687, 758
TasI	AATT	4 cut(s)	90, 128, 175, 345
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	2 cut(s)	222, 591
Tru9I	TTAA	2 cut(s)	222, 591
TscAI	CASTG	2 cut(s)	261, 379
TseI	GCWGC	4 cut(s)	17, 310, 432, 529
TspDTI	ATGAA	3 cut(s)	141, 489, 539
TspRI	CASTG	2 cut(s)	261, 379
VpaK11BI	GGWCC	1 cut(s)	637
XmnI	GAANNNNTTC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.