Rh5CG309100

Rab3 GTPase-activating protein catalytic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004994
Physical Location & Seq
Reverse (-)
34114287 .. 34119873
5587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG309100.1

Sequence Viewer

Length: 1497 bp
ATGGCTGTTCCTTATTATGATGAAAATTTGTACATTCTGAACATGAAAAATGATATGGAAGCAAAGGGGGCAGAATTAATTCCCTCAGTTGAAAGCTTAGCTGTGGACAACATAGTGATTCCGCCATTATCTGTTATGAGGCAATTGGCCACAGCTGTTGAGGCTGGAAAGAAGTCTAAATCAATGAAAGATCTTTTGGCATCATCAGGAAATTCCTCACCAGTGAGAGAGAGGGGGGGTCTGAGTCTCTCTGCTGTGAAGTCATTAGTGCTTCGTGAAAAGGAGGAAAAGCCATCTGATTTTGGTCATAATGAGAAAGTCCTATCATTGATTCACTCTCTATTTGATGCAGAGGGAAATTTTCTAAGGCGGAAGATTGATTCTGGTTCAGACACGATTACCATGGCATCTATACCAAAAGATATTCATGGTGCTCCTCCTGAAAGCCTTGTAGTTAAGTTAGCTGAAGTCATTGGGAGCTTCAGAACCCTTAAGAAAATGACACTGTTTTGGTGTAGTGTTGTTTCCGAACTTAGAAGACTTTGGTCTGAAGAAGCATATGTACCTAGCATTCCTGTGGATGAGATTCCAGATCTGAATTCTTGTCTTTTGTACCAGCGGTTGCAAGTTATCAATTGTTGTGTTTCCAGGAAAAGGCGACGTGATATTGCCACTGAAACACTAGAGTTTGTAATTAGAGAAGCCAGTCCAAACGCTGAAGAATCATCCGTTTCTACAGACAATGCTGCGGGCCCTGTTTTGTATGCTCGAATAAGCACTGGGGAACTGGTTCTCCGATTAGGTGCTGATCGCCCATACGGTAACCTAAAAATGTTGGAAACTGGTGAACCTATGTATACCCCTGTAACTCAGGAAGGACCTTTACTTACTGAAGATCTGATCAAGGAAACAGAGGAGTTTGTGCTTCGAACAGGAAGTGTTGGTGCTGGATGTTCTCAACTCCTCTCTGACATGCAGGCTTTCAAGGCTGCAAATCCTGGTTGTATTTTGGAAGATTTTGTTAGATGGCATTCTCCTCCCGACTGGACAGAGGCTGAACCAAGTACCGAGGCTGAATCTCTGGATGGTAATGACGTATCATCCGCAAGAGGCCAATTAAGTAGCCGAATGCAAAAAGCAGGCAATCTCTGGCATGAGCTATGGGATACATCCAAACCAGTTCCAGCAGTAAAACAAGTACCCCTCTTTGACGAGGACTTAGCTGTGGAAGGTATTCTGGATGGTTTTGAGGACATATCACCTACTGAGCTTTTTGAGCAGCTGTTTATTTCTTTGCTTGGTTTAGGGTTTGTAATTGCTGAGGCCAAATTGTCCACTAACAGCGATTTTTCAAAGCTGTTCTATGAATGCAAGGACTTTGTGGTATCCACTTGTCAAGGCAAAATGTGGACAGAGAAGGTTGACGAGCTTTGTCAGGTATGGATCCACATGATTAAACCAGGGTTGATAGTTATAATGCAAATCATTTGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD Rab3-GTPase_cat

Protein Analysis

498

Amino Acids

55.21

Weight (kDa)

4.83

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rab3-GTPase_cat PF13890 266 - 416 1.1e-50 Rab3 GTPase-activating protein catalytic subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1475
AccI GTMKAC 1 cut(s) 857
AciI CCGC 5 cut(s) 122, 370, 619, 749, 1104
AclWI GGATC 2 cut(s) 1438, 1451
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 4 cut(s) 25, 211, 358, 598
AcuI CTGAAG 5 cut(s) 466, 486, 570, 738, 912
AfaI GTAC 5 cut(s) 32, 564, 614, 1066, 1200
AfiI CCNNNNNNNGG 1 cut(s) 654
AflII CTTAAG 1 cut(s) 491
AgsI TTSAA 3 cut(s) 92, 985, 1353
AjiI CACGTC 1 cut(s) 662
AjnI CCWGG 3 cut(s) 647, 997, 1459
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AloI GAACNNNNNNTCC 2 cut(s) 777, 809
Alw21I GWGCWC 1 cut(s) 436
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 2 cut(s) 1438, 1451
AlwNI CAGNNNCTG 1 cut(s) 1055
AoxI GGCC 4 cut(s) 147, 751, 1111, 1323
ApaI GGGCCC 1 cut(s) 755
ApeKI GCWGC 3 cut(s) 746, 989, 1279
ApoI RAATTY 4 cut(s) 25, 211, 358, 598
AseI ATTAAT 1 cut(s) 77
Asp700I GAANNNNTTC 3 cut(s) 78, 789, 1233
AspS9I GGNCC 3 cut(s) 751, 752, 878
AsuHPI GGTGA 3 cut(s) 210, 857, 1251
AsuII TTCGAA 1 cut(s) 928
AvaII GGWCC 1 cut(s) 878
BaeGI GKGCMC 1 cut(s) 755
BalI TGGCCA 1 cut(s) 149
BamHI GGATCC 1 cut(s) 1443
BanII GRGCYC 1 cut(s) 755
BarI GAAGNNNNNNTAC 4 cut(s) 546, 578, 867, 899
BbsI GAAGAC 1 cut(s) 544
Bbv12I GWGCWC 1 cut(s) 436
BbvCI CCTCAGC 1 cut(s) 1320
BbvI GCAGC 3 cut(s) 733, 976, 1291
BccI CCATC 4 cut(s) 301, 1020, 1079, 1235
BciT130I CCWGG 3 cut(s) 649, 999, 1461
BciVI GTATCC 2 cut(s) 1159, 1396
BclI TGATCA 1 cut(s) 900
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 2 cut(s) 567, 683
BfmI CTRYAG 1 cut(s) 735
BfrI CTTAAG 1 cut(s) 491
BfuI GTATCC 2 cut(s) 1159, 1396
BglII AGATCT 3 cut(s) 190, 592, 895
BisI GCNGC 3 cut(s) 747, 990, 1280
BlpI GCTNAGC 1 cut(s) 97
BlsI GCNGC 3 cut(s) 748, 991, 1281
Bme1390I CCNGG 3 cut(s) 649, 999, 1461
Bme18I GGWCC 1 cut(s) 878
BmgBI CACGTC 1 cut(s) 662
BmgT120I GGNCC 3 cut(s) 751, 752, 878
BmiI GGNNCC 2 cut(s) 753, 1445
BmrFI CCNGG 3 cut(s) 649, 999, 1461
BmrI ACTGGG 1 cut(s) 789
BmsI GCATC 3 cut(s) 209, 337, 416
BmuI ACTGGG 1 cut(s) 789
BoxI GACNNNNGTC 1 cut(s) 544
BpiI GAAGAC 1 cut(s) 544
Bpu10I CCTNAGC 1 cut(s) 1320
Bpu1102I GCTNAGC 1 cut(s) 97
Bpu14I TTCGAA 1 cut(s) 928
BsaJI CCNNGG 3 cut(s) 402, 1068, 1460
BsaXI ACNNNNNCTCC 2 cut(s) 777, 807
Bsc4I CCNNNNNNNGG 1 cut(s) 654
Bse1I ACTGG 7 cut(s) 221, 705, 784, 792, 847, 1049, 1178
BseBI CCWGG 3 cut(s) 649, 999, 1461
BseDI CCNNGG 3 cut(s) 402, 1068, 1460
BseGI GGATG 7 cut(s) 586, 725, 956, 1090, 1100, 1169, 1246
BseLI CCNNNNNNNGG 1 cut(s) 654
BseMII CTCAG 5 cut(s) 99, 233, 884, 1257, 1311
BseNI ACTGG 7 cut(s) 221, 705, 784, 792, 847, 1049, 1178
BseRI GAGGAG 4 cut(s) 426, 929, 953, 1026
BseSI GKGCMC 1 cut(s) 755
BseXI GCAGC 3 cut(s) 733, 976, 1291
BshFI GGCC 4 cut(s) 149, 753, 1113, 1325
BsiHKAI GWGCWC 1 cut(s) 436
BslI CCNNNNNNNGG 1 cut(s) 654
BsmAI GTCTC 1 cut(s) 251
BsmI GAATGC 4 cut(s) 570, 1030, 1134, 1373
BsnI GGCC 4 cut(s) 149, 753, 1113, 1325
Bsp119I TTCGAA 1 cut(s) 928
Bsp120I GGGCCC 1 cut(s) 751
Bsp1286I GDGCHC 2 cut(s) 436, 755
Bsp1407I TGTACA 1 cut(s) 30
Bsp143I GATC 6 cut(s) 190, 592, 808, 895, 900, 1443
Bsp1720I GCTNAGC 1 cut(s) 97
Bsp19I CCATGG 1 cut(s) 402
BspACI CCGC 5 cut(s) 122, 370, 619, 749, 1104
BspANI GGCC 4 cut(s) 149, 753, 1113, 1325
BspCNI CTCAG 5 cut(s) 98, 234, 883, 1258, 1312
BspLI GGNNCC 2 cut(s) 753, 1445
BspPI GGATC 2 cut(s) 1438, 1451
BspT104I TTCGAA 1 cut(s) 928
BspTI CTTAAG 1 cut(s) 491
BsrGI TGTACA 1 cut(s) 30
BsrI ACTGG 7 cut(s) 221, 705, 784, 792, 847, 1049, 1178
BssECI CCNNGG 3 cut(s) 402, 1068, 1460
BssMI GATC 6 cut(s) 190, 592, 808, 895, 900, 1443
BssNAI GTATAC 1 cut(s) 858
BssT1I CCWWGG 1 cut(s) 402
Bst1107I GTATAC 1 cut(s) 858
Bst2UI CCWGG 3 cut(s) 649, 999, 1461
Bst4CI ACNGT 2 cut(s) 507, 821
BstAFI CTTAAG 1 cut(s) 491
BstAUI TGTACA 1 cut(s) 30
BstBI TTCGAA 1 cut(s) 928
BstC8I GCNNGC 3 cut(s) 751, 978, 1141
BstDEI CTNAG 9 cut(s) 85, 97, 242, 365, 533, 870, 1219, 1266, 1320
BstDSI CCRYGG 1 cut(s) 402
BstEII GGTNACC 1 cut(s) 821
BstF5I GGATG 7 cut(s) 586, 725, 956, 1090, 1100, 1169, 1246
BstKTI GATC 6 cut(s) 193, 595, 811, 898, 903, 1446
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 6 cut(s) 190, 592, 808, 895, 900, 1443
BstMWI GCNNNNNNNGC 4 cut(s) 68, 161, 986, 1276
BstNI CCWGG 3 cut(s) 649, 999, 1461
BstNSI RCATGY 1 cut(s) 976
BstPAI GACNNNNGTC 1 cut(s) 544
BstPI GGTNACC 1 cut(s) 821
BstSCI CCNGG 3 cut(s) 647, 997, 1459
BstSFI CTRYAG 1 cut(s) 735
BstSLI GKGCMC 1 cut(s) 755
BstV1I GCAGC 3 cut(s) 733, 976, 1291
BstV2I GAAGAC 1 cut(s) 544
BstX2I RGATCY 4 cut(s) 190, 592, 895, 1443
BstYI RGATCY 4 cut(s) 190, 592, 895, 1443
BstZ17I GTATAC 1 cut(s) 858
BsuI GTATCC 2 cut(s) 1159, 1396
BsuRI GGCC 4 cut(s) 149, 753, 1113, 1325
BtgI CCRYGG 1 cut(s) 402
BtrI CACGTC 1 cut(s) 662
BtsCI GGATG 7 cut(s) 586, 725, 956, 1090, 1100, 1169, 1246
BtsIMutI CAGTG 4 cut(s) 228, 503, 672, 777
Cac8I GCNNGC 3 cut(s) 751, 978, 1141
CaiI CAGNNNCTG 1 cut(s) 1055
Cfr13I GGNCC 3 cut(s) 751, 752, 878
Csp6I GTAC 5 cut(s) 31, 563, 613, 1065, 1199
CspCI CAANNNNNGTGG 2 cut(s) 139, 174
CviAII CATG 6 cut(s) 43, 403, 428, 973, 1154, 1450
CviQI GTAC 5 cut(s) 31, 563, 613, 1065, 1199
DdeI CTNAG 9 cut(s) 85, 97, 242, 365, 533, 870, 1219, 1266, 1320
DpnI GATC 6 cut(s) 192, 594, 810, 897, 902, 1445
DpnII GATC 6 cut(s) 190, 592, 808, 895, 900, 1443
EaeI YGGCCR 1 cut(s) 147
EciI GGCGGA 2 cut(s) 111, 385
Eco130I CCWWGG 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 755
Eco47I GGWCC 1 cut(s) 878
Eco57I CTGAAG 5 cut(s) 466, 486, 570, 738, 912
Eco91I GGTNACC 1 cut(s) 821
EcoO109I RGGNCCY 2 cut(s) 752, 878
EcoO65I GGTNACC 1 cut(s) 821
EcoRI GAATTC 1 cut(s) 598
EcoRII CCWGG 3 cut(s) 647, 997, 1459
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 755
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 6 cut(s) 46, 406, 431, 976, 1157, 1453
FatI CATG 6 cut(s) 42, 402, 427, 972, 1153, 1449
FauI CCCGC 1 cut(s) 742
FauNDI CATATG 1 cut(s) 559
FbaI TGATCA 1 cut(s) 900
FblI GTMKAC 1 cut(s) 857
Fnu4HI GCNGC 3 cut(s) 747, 990, 1280
FokI GGATG 7 cut(s) 593, 712, 963, 1087, 1097, 1156, 1253
FriOI GRGCYC 1 cut(s) 755
Fsp4HI GCNGC 3 cut(s) 747, 990, 1280
FspBI CTAG 2 cut(s) 567, 683
GluI GCNGC 3 cut(s) 747, 990, 1280
HaeIII GGCC 4 cut(s) 149, 753, 1113, 1325
Hin1II CATG 6 cut(s) 46, 406, 431, 976, 1157, 1453
HincII GTYRAC 1 cut(s) 1423
HindII GTYRAC 1 cut(s) 1423
HindIII AAGCTT 1 cut(s) 94
HinfI GANTC 7 cut(s) 118, 244, 331, 380, 586, 722, 1076
HphI GGTGA 3 cut(s) 210, 857, 1251
Hpy166II GTNNAC 6 cut(s) 106, 848, 858, 1335, 1410, 1423
Hpy188III TCNNGA 8 cut(s) 207, 275, 440, 590, 872, 1040, 1082, 1238
Hpy8I GTNNAC 6 cut(s) 106, 848, 858, 1335, 1410, 1423
Hpy99I CGWCG 1 cut(s) 663
HpyAV CCTTC 3 cut(s) 869, 1223, 1411
HpyCH4III ACNGT 2 cut(s) 507, 821
HpyCH4IV ACGT 2 cut(s) 661, 1095
HpyCH4V TGCA 7 cut(s) 350, 625, 976, 992, 1132, 1371, 1480
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 161, 986, 1276
HpyF3I CTNAG 9 cut(s) 85, 97, 242, 365, 533, 870, 1219, 1266, 1320
HpySE526I ACGT 2 cut(s) 661, 1095
Hsp92II CATG 6 cut(s) 46, 406, 431, 976, 1157, 1453
Ksp22I TGATCA 1 cut(s) 900
Kzo9I GATC 6 cut(s) 190, 592, 808, 895, 900, 1443
LmnI GCTCC 2 cut(s) 439, 477
Lsp1109I GCAGC 3 cut(s) 733, 976, 1291
LweI GCATC 3 cut(s) 209, 337, 416
MaeI CTAG 2 cut(s) 567, 683
MaeII ACGT 2 cut(s) 661, 1095
MaeIII GTNAC 2 cut(s) 821, 865
MalI GATC 6 cut(s) 192, 594, 810, 897, 902, 1445
MboI GATC 6 cut(s) 190, 592, 808, 895, 900, 1443
MboII GAAGA 6 cut(s) 385, 549, 563, 731, 905, 1025
MfeI CAATTG 2 cut(s) 143, 634
MflI RGATCY 4 cut(s) 190, 592, 895, 1443
MhlI GDGCHC 2 cut(s) 436, 755
MlsI TGGCCA 1 cut(s) 149
MluNI TGGCCA 1 cut(s) 149
MlyI GAGTC 1 cut(s) 253
MmeI TCCRAC 1 cut(s) 816
Mox20I TGGCCA 1 cut(s) 149
MroXI GAANNNNTTC 3 cut(s) 78, 789, 1233
MscI TGGCCA 1 cut(s) 149
MseI TTAA 5 cut(s) 77, 456, 492, 1118, 1455
MslI CAYNNNNRTG 1 cut(s) 575
Msp20I TGGCCA 1 cut(s) 149
MspA1I CMGCKG 3 cut(s) 155, 619, 1282
MspCI CTTAAG 1 cut(s) 491
MspR9I CCNGG 3 cut(s) 649, 999, 1461
MunI CAATTG 2 cut(s) 143, 634
Mva1269I GAATGC 4 cut(s) 570, 1030, 1134, 1373
MvaI CCWGG 3 cut(s) 649, 999, 1461
MwoI GCNNNNNNNGC 4 cut(s) 68, 161, 986, 1276
NcoI CCATGG 1 cut(s) 402
NdeI CATATG 1 cut(s) 559
NdeII GATC 6 cut(s) 190, 592, 808, 895, 900, 1443
NlaIII CATG 6 cut(s) 46, 406, 431, 976, 1157, 1453
NlaIV GGNNCC 2 cut(s) 753, 1445
NspI RCATGY 1 cut(s) 976
NspV TTCGAA 1 cut(s) 928
PctI GAATGC 4 cut(s) 570, 1030, 1134, 1373
PdmI GAANNNNTTC 3 cut(s) 78, 789, 1233
PfeI GAWTC 6 cut(s) 118, 331, 380, 586, 722, 1076
PfoI TCCNGGA 1 cut(s) 647
PkrI GCNGC 3 cut(s) 748, 991, 1281
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
PpuMI RGGWCCY 1 cut(s) 878
PshAI GACNNNNGTC 1 cut(s) 544
PshBI ATTAAT 1 cut(s) 77
PsiI TTATAA 1 cut(s) 1475
Psp5II RGGWCCY 1 cut(s) 878
Psp6I CCWGG 3 cut(s) 647, 997, 1459
PspEI GGTNACC 1 cut(s) 821
PspGI CCWGG 3 cut(s) 647, 997, 1459
PspN4I GGNNCC 2 cut(s) 753, 1445
PspOMI GGGCCC 1 cut(s) 751
PspPI GGNCC 3 cut(s) 751, 752, 878
PspPPI RGGWCCY 1 cut(s) 878
PstNI CAGNNNCTG 1 cut(s) 1055
PsuI RGATCY 4 cut(s) 190, 592, 895, 1443
PvuII CAGCTG 2 cut(s) 155, 1282
RsaI GTAC 5 cut(s) 32, 564, 614, 1066, 1200
RsaNI GTAC 5 cut(s) 31, 563, 613, 1065, 1199
RseI CAYNNNNRTG 1 cut(s) 575
SaqAI TTAA 5 cut(s) 77, 456, 492, 1118, 1455
SatI GCNGC 3 cut(s) 747, 990, 1280
Sau3AI GATC 6 cut(s) 190, 592, 808, 895, 900, 1443
Sau96I GGNCC 3 cut(s) 751, 752, 878
SchI GAGTC 1 cut(s) 253
ScrFI CCNGG 3 cut(s) 649, 999, 1461
SduI GDGCHC 2 cut(s) 436, 755
SfaNI GCATC 3 cut(s) 209, 337, 416
SfcI CTRYAG 1 cut(s) 735
SfuI TTCGAA 1 cut(s) 928
SinI GGWCC 1 cut(s) 878
SmiMI CAYNNNNRTG 1 cut(s) 575
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
SsiI CCGC 5 cut(s) 122, 370, 619, 749, 1104
SspMI CTAG 2 cut(s) 567, 683
StyD4I CCNGG 3 cut(s) 647, 997, 1459
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 2 cut(s) 507, 821
TaiI ACGT 2 cut(s) 664, 1098
TaqI TCGA 2 cut(s) 769, 928
TatI WGTACW 1 cut(s) 30
TfiI GAWTC 6 cut(s) 118, 331, 380, 586, 722, 1076
Tru1I TTAA 5 cut(s) 77, 456, 492, 1118, 1455
Tru9I TTAA 5 cut(s) 77, 456, 492, 1118, 1455
TscAI CASTG 4 cut(s) 228, 510, 679, 784
TseI GCWGC 3 cut(s) 746, 989, 1279
TspDTI ATGAA 5 cut(s) 36, 59, 200, 416, 1380
TspGWI ACGGA 1 cut(s) 718
TspRI CASTG 4 cut(s) 228, 510, 679, 784
Vha464I CTTAAG 1 cut(s) 491
VpaK11BI GGWCC 1 cut(s) 878
VspI ATTAAT 1 cut(s) 77
XapI RAATTY 4 cut(s) 25, 211, 358, 598
XceI RCATGY 1 cut(s) 976
XmiI GTMKAC 1 cut(s) 857
XmnI GAANNNNTTC 3 cut(s) 78, 789, 1233
XspI CTAG 2 cut(s) 567, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.