Rorug05G0185300

Rab3 GTPase-activating protein catalytic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004994
Physical Location & Seq
Forward (+)
17962654 .. 17964867
2214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0185300.1

Sequence Viewer

Length: 969 bp
ATGGATGGAAAAAATACTAGTTGCAAGGATGATCATCATGATCATCAGGATCATGATGATGAGGATGTTCCACTTCCGGGATTTAGGTTTCACCCAACAGATGAAGAACTAGTTGGGTTCTATCTCCGCCGGAAGATTCAGAAGAAACCCATCAGCTTAGAGCTCATCAAATCAATTGATATCTACAAGCATGATCCTTGGGATCTTCCAAAAGCGACAACTACTGCAGGAGACAAAGAGTGGTACTTCTTCTGCAGAAGAGGGAGAAAGTACAAGAACAGTATCAGACCTAATAGAGTAACCGGGTCTGGGTTTTGGAAAGCAACTGGGATAGACAAGCCAGTTCATGATTCACATAGTAACTGCATTGGGCTGAAGAAAACTCTGGTTTACTACCGTGGAAGTGCCGGAAAAGGCACCAAAACTGATTGGATGATGCACGAATTTCGCCGTCCATCCACCAATGACAACAACAATGTTCACACTAACCACACCTCCTGCACTGCTATATCACACACTGATCCTCAAGAAGCTGAAATTTGGACATTGTGTCGGATATTCAAGAGATCTGTGTCACATAGAAAGTATACACCAGACTGGAGAGAATTGTCTGCTAAACAATCCAGCTCTAAGAAATGCAATACGACTGATCAAGATCGTCATCAAGAGCTCACGAACATCAATCGAGAATCTTATATCAATTTTGGTGCTTCAACCATTTGCTACGAAGACAAGAAGCCCAATGTTCTGAACCATACTAATTATAACAACGGAAGCAACAGTAACCAGACATTGCAGAATGCAGGTCAGTTCAGCTCCGGAATGACTACTGCTACGCATCCATGCAACATGGATTCGTTCACATCGAGCTATTCATATGCAGATATTGAGAATCATGACTTTTTTAACGACAACTGGGAAGAGTTCAAATCAGTTGTACAGCTTGCTCTTGATCCATCGTTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD Rab3-GTPase_cat

Protein Analysis

322

Amino Acids

37.2

Weight (kDa)

7.27

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 26 - 150 1.3e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 765
Acc36I ACCTGC 1 cut(s) 794
AccB1I GGYRCC 1 cut(s) 416
AccI GTMKAC 1 cut(s) 587
AccIII TCCGGA 1 cut(s) 818
AciI CCGC 1 cut(s) 127
AclWI GGATC 5 cut(s) 57, 188, 210, 515, 947
AcsI RAATTY 2 cut(s) 443, 537
AcuI CTGAAG 1 cut(s) 395
AfaI GTAC 3 cut(s) 245, 272, 939
AfiI CCNNNNNNNGG 2 cut(s) 77, 309
AgsI TTSAA 3 cut(s) 562, 714, 928
AhdI GACNNNNNGTC 1 cut(s) 549
AhlI ACTAGT 2 cut(s) 17, 109
AjuI GAANNNNNNNTTGG 2 cut(s) 96, 128
AluBI AGCT 8 cut(s) 156, 163, 533, 627, 670, 816, 870, 943
AluI AGCT 8 cut(s) 156, 163, 533, 627, 670, 816, 870, 943
Alw21I GWGCWC 2 cut(s) 165, 672
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 5 cut(s) 57, 188, 210, 515, 947
Aor13HI TCCGGA 1 cut(s) 818
ApoI RAATTY 2 cut(s) 443, 537
AsuC2I CCSGG 2 cut(s) 78, 304
AsuHPI GGTGA 1 cut(s) 83
BanI GGYRCC 1 cut(s) 416
BanII GRGCYC 2 cut(s) 165, 672
BbsI GAAGAC 1 cut(s) 735
Bbv12I GWGCWC 2 cut(s) 165, 672
BccI CCATC 3 cut(s) 158, 463, 964
BceAI ACGGC 1 cut(s) 435
BcgI CGANNNNNNTGC 2 cut(s) 428, 462
BclI TGATCA 3 cut(s) 31, 40, 649
BcnI CCSGG 2 cut(s) 78, 304
BcoDI GTCTC 1 cut(s) 225
BcuI ACTAGT 2 cut(s) 17, 109
BfaI CTAG 2 cut(s) 18, 110
BfmI CTRYAG 2 cut(s) 225, 253
BfuAI ACCTGC 1 cut(s) 794
BglII AGATCT 1 cut(s) 566
Bme1390I CCNGG 2 cut(s) 78, 304
BmeRI GACNNNNNGTC 1 cut(s) 549
BmiI GGNNCC 1 cut(s) 418
BmrFI CCNGG 2 cut(s) 78, 304
BmrI ACTGGG 2 cut(s) 336, 925
BmsI GCATC 2 cut(s) 426, 847
BmuI ACTGGG 2 cut(s) 336, 925
BpiI GAAGAC 1 cut(s) 735
BpmI CTGGAG 1 cut(s) 619
BpuEI CTTGAG 1 cut(s) 510
BpuMI CCSGG 2 cut(s) 78, 304
BsaBI GATNNNNATC 3 cut(s) 33, 654, 660
BsaJI CCNNGG 2 cut(s) 197, 397
BsaWI WCCGGW 1 cut(s) 818
BsaXI ACNNNNNCTCC 2 cut(s) 479, 509
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 309
Bse1I ACTGG 4 cut(s) 331, 341, 602, 920
Bse3DI GCAATG 1 cut(s) 791
Bse8I GATNNNNATC 3 cut(s) 33, 654, 660
BseAI TCCGGA 1 cut(s) 818
BseDI CCNNGG 2 cut(s) 197, 397
BseGI GGATG 6 cut(s) 10, 34, 70, 438, 455, 838
BseJI GATNNNNATC 3 cut(s) 33, 654, 660
BseLI CCNNNNNNNGG 2 cut(s) 77, 309
BseMI GCAATG 1 cut(s) 791
BseNI ACTGG 4 cut(s) 331, 341, 602, 920
BsgI GTGCAG 1 cut(s) 484
BshNI GGYRCC 1 cut(s) 416
BsiHKAI GWGCWC 2 cut(s) 165, 672
BsiSI CCGG 5 cut(s) 77, 130, 303, 408, 819
BslI CCNNNNNNNGG 2 cut(s) 77, 309
BsmAI GTCTC 1 cut(s) 225
BsmI GAATGC 1 cut(s) 805
Bsp1286I GDGCHC 2 cut(s) 165, 672
Bsp13I TCCGGA 1 cut(s) 818
Bsp1407I TGTACA 1 cut(s) 937
BspACI CCGC 1 cut(s) 127
BspEI TCCGGA 1 cut(s) 818
BspHI TCATGA 4 cut(s) 37, 52, 346, 895
BspLI GGNNCC 1 cut(s) 418
BspMAI CTGCAG 2 cut(s) 229, 257
BspMI ACCTGC 1 cut(s) 794
BspPI GGATC 5 cut(s) 57, 188, 210, 515, 947
BspT107I GGYRCC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 791
BsrGI TGTACA 1 cut(s) 937
BsrI ACTGG 4 cut(s) 331, 341, 602, 920
BssECI CCNNGG 2 cut(s) 197, 397
BssNAI GTATAC 1 cut(s) 588
BssT1I CCWWGG 1 cut(s) 197
Bst1107I GTATAC 1 cut(s) 588
Bst4CI ACNGT 3 cut(s) 281, 398, 782
Bst6I CTCTTC 2 cut(s) 253, 915
BstAUI TGTACA 1 cut(s) 937
BstC8I GCNNGC 1 cut(s) 945
BstDEI CTNAG 2 cut(s) 157, 630
BstDSI CCRYGG 1 cut(s) 397
BstF5I GGATG 6 cut(s) 10, 34, 70, 438, 455, 838
BstMAI GTCTC 1 cut(s) 225
BstSCI CCNGG 2 cut(s) 76, 302
BstSFI CTRYAG 2 cut(s) 225, 253
BstV2I GAAGAC 1 cut(s) 735
BstX2I RGATCY 2 cut(s) 202, 566
BstYI RGATCY 2 cut(s) 202, 566
BstZ17I GTATAC 1 cut(s) 588
BtgI CCRYGG 1 cut(s) 397
BtsCI GGATG 6 cut(s) 10, 34, 70, 438, 455, 838
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 2 cut(s) 501, 516
BveI ACCTGC 1 cut(s) 794
Cac8I GCNNGC 1 cut(s) 945
CciI TCATGA 4 cut(s) 37, 52, 346, 895
Csp6I GTAC 3 cut(s) 244, 271, 938
CviAII CATG 7 cut(s) 38, 53, 191, 347, 843, 850, 896
CviQI GTAC 3 cut(s) 244, 271, 938
DdeI CTNAG 2 cut(s) 157, 630
DriI GACNNNNNGTC 1 cut(s) 549
Eam1104I CTCTTC 2 cut(s) 253, 915
Eam1105I GACNNNNNGTC 1 cut(s) 549
EarI CTCTTC 2 cut(s) 253, 915
EciI GGCGGA 1 cut(s) 116
Ecl136II GAGCTC 2 cut(s) 163, 670
Eco130I CCWWGG 1 cut(s) 197
Eco24I GRGCYC 2 cut(s) 165, 672
Eco32I GATATC 1 cut(s) 181
Eco53kI GAGCTC 2 cut(s) 163, 670
Eco57I CTGAAG 1 cut(s) 395
EcoICRI GAGCTC 2 cut(s) 163, 670
EcoRV GATATC 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 197
EcoT38I GRGCYC 2 cut(s) 165, 672
ErhI CCWWGG 1 cut(s) 197
FaeI CATG 7 cut(s) 41, 56, 194, 350, 846, 853, 899
FatI CATG 7 cut(s) 37, 52, 190, 346, 842, 849, 895
FauNDI CATATG 1 cut(s) 877
FbaI TGATCA 3 cut(s) 31, 40, 649
FblI GTMKAC 1 cut(s) 587
FokI GGATG 6 cut(s) 17, 41, 77, 442, 445, 825
FriOI GRGCYC 2 cut(s) 165, 672
FspBI CTAG 2 cut(s) 18, 110
GsuI CTGGAG 1 cut(s) 619
HapII CCGG 5 cut(s) 77, 130, 303, 408, 819
Hin1II CATG 7 cut(s) 41, 56, 194, 350, 846, 853, 899
HinfI GANTC 5 cut(s) 136, 350, 689, 854, 892
HpaII CCGG 5 cut(s) 77, 130, 303, 408, 819
HphI GGTGA 1 cut(s) 83
Hpy166II GTNNAC 4 cut(s) 391, 481, 588, 861
Hpy188I TCNGA 4 cut(s) 141, 287, 555, 750
Hpy8I GTNNAC 4 cut(s) 391, 481, 588, 861
HpyCH4III ACNGT 3 cut(s) 281, 398, 782
HpyF3I CTNAG 2 cut(s) 157, 630
Hsp92II CATG 7 cut(s) 41, 56, 194, 350, 846, 853, 899
Kpn2I TCCGGA 1 cut(s) 818
Ksp22I TGATCA 3 cut(s) 31, 40, 649
LmnI GCTCC 1 cut(s) 821
LweI GCATC 2 cut(s) 426, 847
MaeI CTAG 2 cut(s) 18, 110
MaeIII GTNAC 4 cut(s) 298, 359, 573, 782
MboII GAAGA 9 cut(s) 116, 145, 154, 197, 241, 270, 388, 740, 932
MfeI CAATTG 1 cut(s) 174
MflI RGATCY 2 cut(s) 202, 566
MhlI GDGCHC 2 cut(s) 165, 672
MluCI AATT 6 cut(s) 174, 443, 537, 605, 700, 760
MmeI TCCRAC 1 cut(s) 533
MnlI CCTC 4 cut(s) 55, 254, 505, 534
MroI TCCGGA 1 cut(s) 818
MseI TTAA 1 cut(s) 906
MslI CAYNNNNRTG 1 cut(s) 57
MspI CCGG 5 cut(s) 77, 130, 303, 408, 819
MspR9I CCNGG 2 cut(s) 78, 304
MunI CAATTG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 805
NciI CCSGG 2 cut(s) 78, 304
NdeI CATATG 1 cut(s) 877
NlaIII CATG 7 cut(s) 41, 56, 194, 350, 846, 853, 899
NlaIV GGNNCC 1 cut(s) 418
NmuCI GTSAC 1 cut(s) 573
PagI TCATGA 4 cut(s) 37, 52, 346, 895
PcsI WCGNNNNNNNCGW 1 cut(s) 863
PctI GAATGC 1 cut(s) 805
PfeI GAWTC 5 cut(s) 136, 350, 689, 854, 892
PfoI TCCNGGA 1 cut(s) 76
PsiI TTATAA 1 cut(s) 765
Psp124BI GAGCTC 2 cut(s) 165, 672
PspN4I GGNNCC 1 cut(s) 418
PstI CTGCAG 2 cut(s) 229, 257
PsuI RGATCY 2 cut(s) 202, 566
RsaI GTAC 3 cut(s) 245, 272, 939
RsaNI GTAC 3 cut(s) 244, 271, 938
RseI CAYNNNNRTG 1 cut(s) 57
SacI GAGCTC 2 cut(s) 165, 672
SaqAI TTAA 1 cut(s) 906
ScrFI CCNGG 2 cut(s) 78, 304
SduI GDGCHC 2 cut(s) 165, 672
SfaNI GCATC 2 cut(s) 426, 847
SfcI CTRYAG 2 cut(s) 225, 253
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 525
SmoI CTYRAG 1 cut(s) 525
SpeI ACTAGT 2 cut(s) 17, 109
Sse9I AATT 6 cut(s) 174, 443, 537, 605, 700, 760
SsiI CCGC 1 cut(s) 127
SspMI CTAG 2 cut(s) 18, 110
SstI GAGCTC 2 cut(s) 165, 672
StyD4I CCNGG 2 cut(s) 76, 302
StyI CCWWGG 1 cut(s) 197
TaaI ACNGT 3 cut(s) 281, 398, 782
TaqI TCGA 2 cut(s) 685, 866
TasI AATT 6 cut(s) 174, 443, 537, 605, 700, 760
TatI WGTACW 2 cut(s) 270, 937
TfiI GAWTC 5 cut(s) 136, 350, 689, 854, 892
Tru1I TTAA 1 cut(s) 906
Tru9I TTAA 1 cut(s) 906
TscAI CASTG 2 cut(s) 508, 523
TseFI GTSAC 1 cut(s) 573
Tsp45I GTSAC 1 cut(s) 573
TspDTI ATGAA 3 cut(s) 117, 335, 864
TspGWI ACGGA 1 cut(s) 786
TspRI CASTG 2 cut(s) 508, 523
XapI RAATTY 2 cut(s) 443, 537
XmiI GTMKAC 1 cut(s) 587
XspI CTAG 2 cut(s) 18, 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.