Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004994

Physical Location & Seq

Genomic Coordinates Reverse (-)

21128860 .. 21135413

Gene Structure 6554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g18890.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2235 bp

ATGATTTTCTCTCTCACTCTGTACACAAATGCCATTTTCTTCCCCACATCTCTCGACAGCTACAGACTTGTACTCCTCCCTTGGTGCAGCAATAGTAGTCACAGTGAGTTCTTAACCTGCGCACCCCCGGCGCAGGATATGGAGCCGCCCTCCTTTGTATCCAAAGCGAGGACCGCCTTCCATTCCGCGGCGGCTAAAGCGGAGCGAGTTCTCTCTGACTTAAAGCCCGATCGAGATTCTGACAAGGAATCGCCGAGGAATTCGATCGATTACGCAGGTTACGAATCGCCGAGGGAGGAGGGAGAGTCCAAGTTGCTTGGGAATGAAATAATACAGGGCTCGAAAGAATCGAAGCATCTTGGGTGGAGACCACCGAACATAGGGACAAAGCAAGATTGGCAGGATAGATTTAGGAACATTGGACTAGGGAAGAAAGGAGGTGAAGATACTGAGAAGGCTGAGTATTCTTCCATGGCAGTCCCGTTTTATGATGAAAATATGTATTTGCTGAACATGAAAAACGATACTGAAGCAAAGGGGGCAGAGATGATTCCATCAGTTGAAAGCTTAGTCTCAGACAACATTCTGATTCCTCCGTTATCTGTTATGAGACAATTGGCTATAGCTGTTGAGGCTGGAAAGAAGTCCAAGTCATTGAAAGATTTTTTGGCGTCATCAGGGAGTTCCTCACCTGTCAGGGAGAGAGCGGGTCTGAGTCTATCTGCAGTGAAGTCATTAATGCTTCGTGAAAAGGATGAAAAGCCATCTGATTTTGTTAATAACGAGAAGGTCCTAGCGTTGATTCGGTCTCTATTTGATGCAGAGGGGAATTTTCTGAGATGGAAGATTGATTCTGGTTCAGAGGCAGTTACCCCAGCATCTTTGCCTAGAGATATTCATGGTGCTCCTCCTGAAAGCCTTGTTGTTAAGTTAGCTGAAGTCATTGGGAGCTTCAGAACCCTCAAGAAAATGACTCTGTTTTGGTGCAGAGTTGTTGTTGAACTGAGAAGACTTTGGTCTGAAGAACAATATGTGCCTAGCATCCCCTTGGATGAGATTCCAGATCTGAATTCCTGTCTTTTGTACCAGCGGTTGCAAGTGATGAACTGTTGTGTTTCTAGGAAAAGGCGTCATGATATCGCCACTGAAAAATTAGACCTTGTAATAAGGGAAGCTAGTCTACATACAGAAGAATCCGCTCTTTCCAAAGACAATCCTGCAGGCCCTATTTTGTATGCTAGATTAAGCACTGGGGAACTTGTCCTCCGACTAGGTGCTAGTAGCCCATCCGGCGACCTAACAATGTTGGAAACTGGTGAACCTGTGTACTCCCCTGTGACCCAGGAAGGACCTTTGCTTACTGAAGATCTTATCAAAGAAAATGAGGAGTTTGTGCTTCGAACAGGAAGTGTTGGTGCTGGATGTTCTCAACTCCTCTCTGACATGCAGGCTTTCAAGGCTGCAAATCCTGGTTGTATTTTGGAAGACTTTGTGAGATGGCACTCCCCTCCTGACTGGACAGAGACTGAGCCAAGTGATGAGGAAAATGACTCTTTTGTTGGTATTGACGTATTGTCCACACGGGGCTATCTCAGTAGCCGAATGCAAAAAGAAGGCAATTTGTGGCGTGAGTTTTGGGATACATCCAAACCAGTTCCAGCAGTTAAACAAGCACCCCTCTTTGATGAGGATTTAGCAGTGGAAGGTATCCTGGATGGTTTAGAGGACATATCACCTTCCGAGCTTTTTCAGCAGCTGTTTGTTTCTTTGCTTGGTTTAGGATTTGTAATTGCTGAGGCTAAACTGTCCACGAGCAGTGATTTTTCGAAGCTGTTTTATGAATGCAAGGAATATGTTGTTTCCTCTTGTCAAAGCAGCACCTGGACTGAGAAGGTTGAAGAGCTTTGCCAGGTATATGAAACAGTGGAGACTATGTTACTCAATCCAGAGGAAGCATTAAGAGCAATGAATCAGCCAGACGAATCGACAACCCCTTCTGGCGAACCAAAACGGCGGTTTAGGAGGCTTACCCTCAACTTTGGTGGCAAAGACAAGCAGTTGAGAAAAACTGCATCAAAGGACCCGAAAAACTCAACAAGCCCCGGTAGCCAACCGTTTTCGAGTTTCTTCGACAACAAGTCATCATTATTTTCCAAAAAGCCTCCCAAGCCGGAAAATACATCTCCTGTTGAAAAACCTTCGAATACAGTTGAAAATGATTGGACAGTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSD Rab3-GTPase_cat

Protein Analysis

745

Amino Acids

82.89

Weight (kDa)

5.02

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55060 AT5G55060 AT5G55060
fragaria_vesca	FvH4_3g23020 FvH4_3g23020 FvH4_3g23020 FvH4_3g23020 FvH4_3g23020 FvH4_3g23020 FvH4_3g23020 FvH4_3g23020 FvH4_3g23020 FvH4_3g23020
malus_domestica	MD03G1198400.v1.1 MD11G1214500.v1.1
prunus_persica	Prupe.4G216600_v2.0.a1 Prupe.4G216600_v2.0.a1
pyrus_communis	pycom03g15000 pycom11g18890
rosa_chinensis	RchiOBHm_Chr5g0040501
rosa_laevigata	RLG00000033984
rosa_multiflora	Rmu_sc0010369.1_g000012
rosa_roxburghii	Rroxscaffold_1G00040150 Rroxscaffold_1G00040880
rosa_rugosa	Rorug05G0185300
rosa_samantha	Rh5BG276200 Rh5CG309100 Rh5DG284700
rosa_wichuraiana	Rw5G015460 Rw5G025490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	121
Acc36I	ACCTGC	2 cut(s)	125, 266
AccBSI	CCGCTC	2 cut(s)	707, 1199
AccI	GTMKAC	1 cut(s)	1180
AccII	CGCG	1 cut(s)	188
AcsI	RAATTY	3 cut(s)	259, 829, 1069
AcuI	CTGAAG	5 cut(s)	549, 937, 957, 1041, 1383
AcyI	GRCGYC	2 cut(s)	671, 1129
AfaI	GTAC	4 cut(s)	23, 72, 1085, 1328
AfiI	CCNNNNNNNGG	4 cut(s)	133, 168, 187, 380
AgsI	TTSAA	7 cut(s)	563, 658, 1001, 1456, 1898, 2192, 2213
AhdI	GACNNNNNGTC	2 cut(s)	1573, 2137
AjnI	CCWGG	5 cut(s)	1341, 1468, 1710, 1880, 1908
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
AloI	GAACNNNNNNTCC	2 cut(s)	1248, 1280
Alw21I	GWGCWC	1 cut(s)	907
Alw26I	GTCTC	6 cut(s)	361, 577, 604, 813, 1517, 1922
AlwNI	CAGNNNCTG	3 cut(s)	1526, 1756, 1881
AoxI	GGCC	1 cut(s)	1222
ApeKI	GCWGC	4 cut(s)	87, 1460, 1753, 1875
ApoI	RAATTY	3 cut(s)	259, 829, 1069
AseI	ATTAAT	1 cut(s)	737
AspLEI	GCGC	2 cut(s)	122, 133
AspS9I	GGNCC	5 cut(s)	171, 790, 1223, 1349, 2080
AsuC2I	CCSGG	2 cut(s)	128, 2103
AsuHPI	GGTGA	4 cut(s)	452, 681, 1328, 1725
AsuII	TTCGAA	3 cut(s)	1399, 1826, 2201
AvaII	GGWCC	4 cut(s)	171, 790, 1349, 2080
BanII	GRGCYC	1 cut(s)	341
BarI	GAAGNNNNNNTAC	2 cut(s)	1164, 1196
BauI	CACGAG	1 cut(s)	1810
BbsI	GAAGAC	2 cut(s)	1015, 1491
Bbv12I	GWGCWC	1 cut(s)	907
BbvCI	CCTCAGC	1 cut(s)	1794
BbvI	GCAGC	4 cut(s)	99, 1447, 1765, 1887
BccI	CCATC	6 cut(s)	562, 772, 834, 1294, 1491, 1709
BceAI	ACGGC	1 cut(s)	2027
BciT130I	CCWGG	5 cut(s)	1343, 1470, 1712, 1882, 1910
BciVI	GTATCC	3 cut(s)	169, 1633, 1718
BcnI	CCSGG	2 cut(s)	128, 2103
BcoDI	GTCTC	6 cut(s)	361, 577, 604, 813, 1517, 1922
BfaI	CTAG	9 cut(s)	425, 794, 888, 1038, 1119, 1176, 1239, 1271, 1278
BfmI	CTRYAG	4 cut(s)	61, 621, 723, 1218
BfuAI	ACCTGC	2 cut(s)	125, 266
BfuI	GTATCC	3 cut(s)	169, 1633, 1718
BglI	GCCNNNNNGGC	1 cut(s)	1290
BglII	AGATCT	2 cut(s)	1063, 1366
BisI	GCNGC	7 cut(s)	88, 146, 189, 192, 1461, 1754, 1876
BlsI	GCNGC	7 cut(s)	89, 147, 190, 193, 1462, 1755, 1877
Bme1390I	CCNGG	7 cut(s)	128, 1343, 1470, 1712, 1882, 1910, 2103
Bme18I	GGWCC	4 cut(s)	171, 790, 1349, 2080
BmeRI	GACNNNNNGTC	2 cut(s)	1573, 2137
BmgT120I	GGNCC	5 cut(s)	171, 790, 1223, 1349, 2080
BmiI	GGNNCC	2 cut(s)	144, 2082
BmrFI	CCNGG	7 cut(s)	128, 1343, 1470, 1712, 1882, 1910, 2103
BmrI	ACTGGG	1 cut(s)	1260
BmsI	GCATC	5 cut(s)	364, 808, 887, 1050, 2081
BmuI	ACTGGG	1 cut(s)	1260
BoxI	GACNNNNGTC	1 cut(s)	1015
BpiI	GAAGAC	2 cut(s)	1015, 1491
BplI	GAGNNNNNCTC	2 cut(s)	134, 166
Bpu10I	CCTNAGC	1 cut(s)	1794
Bpu14I	TTCGAA	3 cut(s)	1399, 1826, 2201
BpuEI	CTTGAG	1 cut(s)	947
BpuMI	CCSGG	2 cut(s)	128, 2103
Bsa29I	ATCGAT	1 cut(s)	267
BsaHI	GRCGYC	2 cut(s)	671, 1129
BsaI	GGTCTC	2 cut(s)	361, 813
BsaJI	CCNNGG	9 cut(s)	80, 126, 186, 254, 290, 471, 1047, 1341, 2101
BsaXI	ACNNNNNCTCC	8 cut(s)	57, 87, 290, 320, 1248, 1278, 1919, 1949
Bsc4I	CCNNNNNNNGG	4 cut(s)	133, 168, 187, 380
Bse1I	ACTGG	4 cut(s)	1255, 1318, 1520, 1652
Bse3DI	GCAATG	1 cut(s)	1971
BseBI	CCWGG	5 cut(s)	1343, 1470, 1712, 1882, 1910
BseCI	ATCGAT	1 cut(s)	267
BseDI	CCNNGG	9 cut(s)	80, 126, 186, 254, 290, 471, 1047, 1341, 2101
BseGI	GGATG	7 cut(s)	760, 1041, 1057, 1286, 1427, 1643, 1720
BseLI	CCNNNNNNNGG	4 cut(s)	133, 168, 187, 380
BseMI	GCAATG	1 cut(s)	1971
BseNI	ACTGG	4 cut(s)	1255, 1318, 1520, 1652
BseRI	GAGGAG	5 cut(s)	65, 311, 897, 1400, 1424
BseXI	GCAGC	4 cut(s)	99, 1447, 1765, 1887
BseYI	CCCAGC	1 cut(s)	874
BsgI	GTGCAG	2 cut(s)	106, 1006
Bsh1236I	CGCG	1 cut(s)	188
Bsh1285I	CGRYCG	2 cut(s)	232, 267
BshFI	GGCC	1 cut(s)	1224
BshVI	ATCGAT	1 cut(s)	267
BsiEI	CGRYCG	2 cut(s)	232, 267
BsiHKAI	GWGCWC	1 cut(s)	907
BsiSI	CCGG	4 cut(s)	128, 1290, 2103, 2171
BslFI	GGGAC	2 cut(s)	397, 464
BslI	CCNNNNNNNGG	4 cut(s)	133, 168, 187, 380
BsmAI	GTCTC	6 cut(s)	361, 577, 604, 813, 1517, 1922
BsmFI	GGGAC	2 cut(s)	397, 464
BsmI	GAATGC	2 cut(s)	1608, 1847
BsnI	GGCC	1 cut(s)	1224
Bso31I	GGTCTC	2 cut(s)	361, 813
Bsp119I	TTCGAA	3 cut(s)	1399, 1826, 2201
Bsp1286I	GDGCHC	2 cut(s)	341, 907
Bsp1407I	TGTACA	1 cut(s)	21
Bsp143I	GATC	4 cut(s)	229, 264, 1063, 1366
Bsp19I	CCATGG	1 cut(s)	471
BspANI	GGCC	1 cut(s)	1224
BspDI	ATCGAT	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	188
BspHI	TCATGA	1 cut(s)	1132
BspLI	GGNNCC	2 cut(s)	144, 2082
BspMAI	CTGCAG	2 cut(s)	727, 1222
BspMI	ACCTGC	2 cut(s)	125, 266
BspQI	GCTCTTC	1 cut(s)	1893
BspT104I	TTCGAA	3 cut(s)	1399, 1826, 2201
BspTNI	GGTCTC	2 cut(s)	361, 813
BsrBI	CCGCTC	2 cut(s)	707, 1199
BsrDI	GCAATG	1 cut(s)	1971
BsrGI	TGTACA	1 cut(s)	21
BsrI	ACTGG	4 cut(s)	1255, 1318, 1520, 1652
BssECI	CCNNGG	9 cut(s)	80, 126, 186, 254, 290, 471, 1047, 1341, 2101
BssMI	GATC	4 cut(s)	229, 264, 1063, 1366
BssNI	GRCGYC	2 cut(s)	671, 1129
BssSI	CACGAG	1 cut(s)	1810
BssT1I	CCWWGG	3 cut(s)	80, 471, 1047
Bst2BI	CACGAG	1 cut(s)	1810
Bst2UI	CCWGG	5 cut(s)	1343, 1470, 1712, 1882, 1910
Bst4CI	ACNGT	7 cut(s)	104, 1109, 1806, 1924, 2115, 2209, 2227
Bst6I	CTCTTC	1 cut(s)	1893
BstACI	GRCGYC	2 cut(s)	671, 1129
BstAUI	TGTACA	1 cut(s)	21
BstBI	TTCGAA	3 cut(s)	1399, 1826, 2201
BstC8I	GCNNGC	2 cut(s)	1222, 1449
BstDSI	CCRYGG	2 cut(s)	186, 471
BstF5I	GGATG	7 cut(s)	760, 1041, 1057, 1286, 1427, 1643, 1720
BstFNI	CGCG	1 cut(s)	188
BstHHI	GCGC	2 cut(s)	122, 133
BstKTI	GATC	4 cut(s)	232, 267, 1066, 1369
BstMAI	GTCTC	6 cut(s)	361, 577, 604, 813, 1517, 1922
BstMBI	GATC	4 cut(s)	229, 264, 1063, 1366
BstMCI	CGRYCG	2 cut(s)	232, 267
BstNI	CCWGG	5 cut(s)	1343, 1470, 1712, 1882, 1910
BstNSI	RCATGY	1 cut(s)	1447
BstPAI	GACNNNNGTC	1 cut(s)	1015
BstSCI	CCNGG	7 cut(s)	126, 1341, 1468, 1710, 1880, 1908, 2101
BstSFI	CTRYAG	4 cut(s)	61, 621, 723, 1218
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	4 cut(s)	99, 1447, 1765, 1887
BstV2I	GAAGAC	2 cut(s)	1015, 1491
BstX2I	RGATCY	2 cut(s)	1063, 1366
BstYI	RGATCY	2 cut(s)	1063, 1366
Bsu15I	ATCGAT	1 cut(s)	267
BsuI	GTATCC	3 cut(s)	169, 1633, 1718
BsuRI	GGCC	1 cut(s)	1224
BsuTUI	ATCGAT	1 cut(s)	267
BtgI	CCRYGG	2 cut(s)	186, 471
BtsCI	GGATG	7 cut(s)	760, 1041, 1057, 1286, 1427, 1643, 1720
BtsI	GCAGTG	3 cut(s)	732, 1704, 1822
BtsIMutI	CAGTG	7 cut(s)	109, 732, 1143, 1248, 1704, 1822, 1929
BveI	ACCTGC	2 cut(s)	125, 266
Cac8I	GCNNGC	2 cut(s)	1222, 1449
CaiI	CAGNNNCTG	3 cut(s)	1526, 1756, 1881
CciI	TCATGA	1 cut(s)	1132
CfoI	GCGC	2 cut(s)	122, 133
Cfr13I	GGNCC	5 cut(s)	171, 790, 1223, 1349, 2080
Cfr42I	CCGCGG	1 cut(s)	189
ClaI	ATCGAT	1 cut(s)	267
CseI	GACGC	2 cut(s)	660, 1118
Csp6I	GTAC	4 cut(s)	22, 71, 1084, 1327
CspCI	CAANNNNNGTGG	2 cut(s)	2023, 2058
CviAII	CATG	5 cut(s)	472, 514, 899, 1133, 1444
CviQI	GTAC	4 cut(s)	22, 71, 1084, 1327
DpnI	GATC	4 cut(s)	231, 266, 1065, 1368
DpnII	GATC	4 cut(s)	229, 264, 1063, 1366
DriI	GACNNNNNGTC	2 cut(s)	1573, 2137
Eam1104I	CTCTTC	1 cut(s)	1893
Eam1105I	GACNNNNNGTC	2 cut(s)	1573, 2137
EarI	CTCTTC	1 cut(s)	1893
Eco130I	CCWWGG	3 cut(s)	80, 471, 1047
Eco24I	GRGCYC	1 cut(s)	341
Eco31I	GGTCTC	2 cut(s)	361, 813
Eco32I	GATATC	1 cut(s)	1138
Eco47I	GGWCC	4 cut(s)	171, 790, 1349, 2080
Eco57I	CTGAAG	5 cut(s)	549, 937, 957, 1041, 1383
EcoO109I	RGGNCCY	4 cut(s)	790, 1223, 1349, 2080
EcoRI	GAATTC	2 cut(s)	259, 1069
EcoRII	CCWGG	5 cut(s)	1341, 1468, 1710, 1880, 1908
EcoRV	GATATC	1 cut(s)	1138
EcoT14I	CCWWGG	3 cut(s)	80, 471, 1047
EcoT38I	GRGCYC	1 cut(s)	341
ErhI	CCWWGG	3 cut(s)	80, 471, 1047
FaeI	CATG	5 cut(s)	475, 517, 902, 1136, 1447
FaqI	GGGAC	2 cut(s)	397, 464
FatI	CATG	5 cut(s)	471, 513, 898, 1132, 1443
FauI	CCCGC	1 cut(s)	700
FblI	GTMKAC	1 cut(s)	1180
Fnu4HI	GCNGC	7 cut(s)	88, 146, 189, 192, 1461, 1754, 1876
FokI	GGATG	7 cut(s)	767, 1028, 1064, 1273, 1434, 1630, 1727
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	7 cut(s)	88, 146, 189, 192, 1461, 1754, 1876
FspBI	CTAG	9 cut(s)	425, 794, 888, 1038, 1119, 1176, 1239, 1271, 1278
FspI	TGCGCA	1 cut(s)	121
GlaI	GCGC	2 cut(s)	121, 132
GluI	GCNGC	7 cut(s)	88, 146, 189, 192, 1461, 1754, 1876
GsaI	CCCAGC	1 cut(s)	878
HaeIII	GGCC	1 cut(s)	1224
HapII	CCGG	4 cut(s)	128, 1290, 2103, 2171
HgaI	GACGC	2 cut(s)	660, 1118
HhaI	GCGC	2 cut(s)	122, 133
Hin1I	GRCGYC	2 cut(s)	671, 1129
Hin1II	CATG	5 cut(s)	475, 517, 902, 1136, 1447
Hin6I	GCGC	2 cut(s)	120, 131
HinP1I	GCGC	2 cut(s)	120, 131
HindIII	AAGCTT	1 cut(s)	565
HpaII	CCGG	4 cut(s)	128, 1290, 2103, 2171
HphI	GGTGA	4 cut(s)	452, 681, 1328, 1725
Hpy166II	GTNNAC	6 cut(s)	24, 1181, 1319, 1327, 1578, 1809
Hpy188III	TCNNGA	9 cut(s)	53, 233, 746, 911, 964, 1061, 1133, 1511, 1946
Hpy8I	GTNNAC	6 cut(s)	24, 1181, 1319, 1327, 1578, 1809
HpyCH4III	ACNGT	7 cut(s)	104, 1109, 1806, 1924, 2115, 2209, 2227
HpyCH4IV	ACGT	1 cut(s)	1569
HpySE526I	ACGT	1 cut(s)	1569
Hsp92I	GRCGYC	2 cut(s)	671, 1129
Hsp92II	CATG	5 cut(s)	475, 517, 902, 1136, 1447
HspAI	GCGC	2 cut(s)	120, 131
KspI	CCGCGG	1 cut(s)	189
Kzo9I	GATC	4 cut(s)	229, 264, 1063, 1366
LguI	GCTCTTC	1 cut(s)	1893
LmnI	GCTCC	4 cut(s)	142, 202, 910, 948
Lsp1109I	GCAGC	4 cut(s)	99, 1447, 1765, 1887
LweI	GCATC	5 cut(s)	364, 808, 887, 1050, 2081
MaeI	CTAG	9 cut(s)	425, 794, 888, 1038, 1119, 1176, 1239, 1271, 1278
MaeII	ACGT	1 cut(s)	1569
MaeIII	GTNAC	5 cut(s)	98, 278, 868, 1336, 1935
MalI	GATC	4 cut(s)	231, 266, 1065, 1368
MbiI	CCGCTC	2 cut(s)	707, 1199
MboI	GATC	4 cut(s)	229, 264, 1063, 1366
MfeI	CAATTG	1 cut(s)	614
MflI	RGATCY	2 cut(s)	1063, 1366
MhlI	GDGCHC	2 cut(s)	341, 907
MluCI	AATT	7 cut(s)	259, 614, 829, 1069, 1151, 1618, 1788
MlyI	GAGTC	4 cut(s)	314, 724, 967, 1544
MmeI	TCCRAC	2 cut(s)	1287, 1291
MseI	TTAA	9 cut(s)	113, 221, 737, 777, 927, 1244, 1665, 1958, 2233
MspA1I	CMGCKG	3 cut(s)	188, 1090, 1756
MspI	CCGG	4 cut(s)	128, 1290, 2103, 2171
MspR9I	CCNGG	7 cut(s)	128, 1343, 1470, 1712, 1882, 1910, 2103
MunI	CAATTG	1 cut(s)	614
Mva1269I	GAATGC	2 cut(s)	1608, 1847
MvaI	CCWGG	5 cut(s)	1343, 1470, 1712, 1882, 1910
MvnI	CGCG	1 cut(s)	188
NciI	CCSGG	2 cut(s)	128, 2103
NcoI	CCATGG	1 cut(s)	471
NdeII	GATC	4 cut(s)	229, 264, 1063, 1366
NlaIII	CATG	5 cut(s)	475, 517, 902, 1136, 1447
NlaIV	GGNNCC	2 cut(s)	144, 2082
NmeAIII	GCCGAG	2 cut(s)	279, 315
NmuCI	GTSAC	2 cut(s)	98, 1336
NsbI	TGCGCA	1 cut(s)	121
NspI	RCATGY	1 cut(s)	1447
NspV	TTCGAA	3 cut(s)	1399, 1826, 2201
PagI	TCATGA	1 cut(s)	1132
PciSI	GCTCTTC	1 cut(s)	1893
PcsI	WCGNNNNNNNCGW	2 cut(s)	279, 347
PctI	GAATGC	2 cut(s)	1608, 1847
PfoI	TCCNGGA	1 cut(s)	1710
PkrI	GCNGC	7 cut(s)	89, 147, 190, 193, 1462, 1755, 1877
Ple19I	CGATCG	2 cut(s)	232, 267
PleI	GAGTC	4 cut(s)	313, 723, 967, 1544
PpsI	GAGTC	4 cut(s)	313, 723, 967, 1544
PpuMI	RGGWCCY	3 cut(s)	790, 1349, 2080
PshAI	GACNNNNGTC	1 cut(s)	1015
PshBI	ATTAAT	1 cut(s)	737
Psp5II	RGGWCCY	3 cut(s)	790, 1349, 2080
Psp6I	CCWGG	5 cut(s)	1341, 1468, 1710, 1880, 1908
PspFI	CCCAGC	1 cut(s)	874
PspGI	CCWGG	5 cut(s)	1341, 1468, 1710, 1880, 1908
PspN4I	GGNNCC	2 cut(s)	144, 2082
PspPI	GGNCC	5 cut(s)	171, 790, 1223, 1349, 2080
PspPPI	RGGWCCY	3 cut(s)	790, 1349, 2080
PstI	CTGCAG	2 cut(s)	727, 1222
PstNI	CAGNNNCTG	3 cut(s)	1526, 1756, 1881
PsuI	RGATCY	2 cut(s)	1063, 1366
PvuI	CGATCG	2 cut(s)	232, 267
PvuII	CAGCTG	1 cut(s)	1756
RsaI	GTAC	4 cut(s)	23, 72, 1085, 1328
RsaNI	GTAC	4 cut(s)	22, 71, 1084, 1327
SacII	CCGCGG	1 cut(s)	189
SapI	GCTCTTC	1 cut(s)	1893
SaqAI	TTAA	9 cut(s)	113, 221, 737, 777, 927, 1244, 1665, 1958, 2233
SatI	GCNGC	7 cut(s)	88, 146, 189, 192, 1461, 1754, 1876
Sau3AI	GATC	4 cut(s)	229, 264, 1063, 1366
Sau96I	GGNCC	5 cut(s)	171, 790, 1223, 1349, 2080
SbfI	CCTGCAGG	1 cut(s)	1222
SchI	GAGTC	4 cut(s)	314, 724, 967, 1544
ScrFI	CCNGG	7 cut(s)	128, 1343, 1470, 1712, 1882, 1910, 2103
SdaI	CCTGCAGG	1 cut(s)	1222
SduI	GDGCHC	2 cut(s)	341, 907
SfaNI	GCATC	5 cut(s)	364, 808, 887, 1050, 2081
SfcI	CTRYAG	4 cut(s)	61, 621, 723, 1218
Sfr303I	CCGCGG	1 cut(s)	189
SfuI	TTCGAA	3 cut(s)	1399, 1826, 2201
SgrBI	CCGCGG	1 cut(s)	189
SinI	GGWCC	4 cut(s)	171, 790, 1349, 2080
SmlI	CTYRAG	1 cut(s)	962
SmoI	CTYRAG	1 cut(s)	962
Sse8387I	CCTGCAGG	1 cut(s)	1222
Sse9I	AATT	7 cut(s)	259, 614, 829, 1069, 1151, 1618, 1788
SspMI	CTAG	9 cut(s)	425, 794, 888, 1038, 1119, 1176, 1239, 1271, 1278
StyD4I	CCNGG	7 cut(s)	126, 1341, 1468, 1710, 1880, 1908, 2101
StyI	CCWWGG	3 cut(s)	80, 471, 1047
TaaI	ACNGT	7 cut(s)	104, 1109, 1806, 1924, 2115, 2209, 2227
TaiI	ACGT	1 cut(s)	1572
TaqII	GACCGA	1 cut(s)	795
TasI	AATT	7 cut(s)	259, 614, 829, 1069, 1151, 1618, 1788
TatI	WGTACW	3 cut(s)	21, 70, 1326
TauI	GCSGC	3 cut(s)	148, 191, 194
Tru1I	TTAA	9 cut(s)	113, 221, 737, 777, 927, 1244, 1665, 1958, 2233
Tru9I	TTAA	9 cut(s)	113, 221, 737, 777, 927, 1244, 1665, 1958, 2233
TscAI	CASTG	7 cut(s)	109, 732, 1150, 1255, 1704, 1822, 1929
TseFI	GTSAC	2 cut(s)	98, 1336
TseI	GCWGC	4 cut(s)	87, 1460, 1753, 1875
Tsp45I	GTSAC	2 cut(s)	98, 1336
TspDTI	ATGAA	9 cut(s)	339, 507, 530, 771, 887, 1118, 1854, 1932, 1982
TspGWI	ACGGA	1 cut(s)	585
TspRI	CASTG	7 cut(s)	109, 732, 1150, 1255, 1704, 1822, 1929
VpaK11BI	GGWCC	4 cut(s)	171, 790, 1349, 2080
VspI	ATTAAT	1 cut(s)	737
XapI	RAATTY	3 cut(s)	259, 829, 1069
XceI	RCATGY	1 cut(s)	1447
XmiI	GTMKAC	1 cut(s)	1180
XspI	CTAG	9 cut(s)	425, 794, 888, 1038, 1119, 1176, 1239, 1271, 1278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.