Rw5G015460

Rab3 GTPase-activating protein catalytic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0004994
Physical Location & Seq
Reverse (-)
19206291 .. 19206974
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G015460.1

Sequence Viewer

Length: 324 bp
ATGCAAAAAGCAGGCAATCTCTGGTATGAGCTATGGGATACATCCAAACCAGTTCCAGCAGTAAAACAAGTACCCCTCTTTGATAAGGACTTAGCTGTGGAAGGTATTCTGGATGGTTTTGAGGACATATCACCTTCTGAGCTTTTTAAGCAGCTGTTTATTTCTTTGCTTGGTTTAGGGTTTGTAATTGCTGAGGCCAAATTGTCCACTAACAGCGATTTTTCAAAGCTGTTCTATGAATGCAAGGACTTTGTGGTATCCACTTGTCAAGGCAAAATGTGGACAGAGAAGGTTGACAAGCTTTGTCAGGACTTTCATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD Rab3-GTPase_cat

Protein Analysis

107

Amino Acids

12.16

Weight (kDa)

4.73

Isoelectric Point (pI)

30.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rab3-GTPase_cat PF13890 1 - 40 1.2e-08 Rab3 GTPase-activating protein catalytic subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 72
AgsI TTSAA 1 cut(s) 225
AluBI AGCT 6 cut(s) 31, 95, 142, 154, 229, 301
AluI AGCT 6 cut(s) 31, 95, 142, 154, 229, 301
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 1 cut(s) 151
Asp700I GAANNNNTTC 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 123
BbvCI CCTCAGC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 163
BccI CCATC 1 cut(s) 107
BciVI GTATCC 2 cut(s) 31, 268
BfuI GTATCC 2 cut(s) 31, 268
BisI GCNGC 1 cut(s) 152
BlsI GCNGC 1 cut(s) 153
Bpu10I CCTNAGC 1 cut(s) 192
Bse1I ACTGG 1 cut(s) 50
BseGI GGATG 2 cut(s) 41, 118
BseMII CTCAG 2 cut(s) 129, 183
BseNI ACTGG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 163
BshFI GGCC 1 cut(s) 197
BsmI GAATGC 1 cut(s) 245
BsnI GGCC 1 cut(s) 197
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 2 cut(s) 130, 184
BsrI ACTGG 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 3 cut(s) 91, 138, 192
BstF5I GGATG 2 cut(s) 41, 118
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 163
BsuI GTATCC 2 cut(s) 31, 268
BsuRI GGCC 1 cut(s) 197
BtsCI GGATG 2 cut(s) 41, 118
Cac8I GCNNGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 71
CviAII CATG 1 cut(s) 317
CviJI RGCY 7 cut(s) 31, 95, 142, 154, 197, 229, 301
CviKI_1 RGCY 7 cut(s) 31, 95, 142, 154, 197, 229, 301
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 3 cut(s) 91, 138, 192
FaeI CATG 1 cut(s) 320
FaiI YATR 5 cut(s) 27, 34, 128, 237, 318
FatI CATG 1 cut(s) 316
Fnu4HI GCNGC 1 cut(s) 152
FokI GGATG 2 cut(s) 28, 125
Fsp4HI GCNGC 1 cut(s) 152
GluI GCNGC 1 cut(s) 152
HaeIII GGCC 1 cut(s) 197
Hin1II CATG 1 cut(s) 320
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 299
HphI GGTGA 1 cut(s) 123
Hpy166II GTNNAC 3 cut(s) 207, 282, 295
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 2 cut(s) 110, 308
Hpy8I GTNNAC 3 cut(s) 207, 282, 295
HpyAV CCTTC 3 cut(s) 95, 144, 283
HpyCH4V TGCA 2 cut(s) 4, 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpyF3I CTNAG 3 cut(s) 91, 138, 192
Hsp92II CATG 1 cut(s) 320
LpnPI CCDG 5 cut(s) 7, 63, 69, 95, 293
Lsp1109I GCAGC 1 cut(s) 163
MluCI AATT 2 cut(s) 186, 200
MnlI CCTC 3 cut(s) 86, 115, 187
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 2 cut(s) 147, 322
MspA1I CMGCKG 1 cut(s) 154
Mva1269I GAATGC 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 148
NlaIII CATG 1 cut(s) 320
PctI GAATGC 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 105
PkrI GCNGC 1 cut(s) 153
PvuII CAGCTG 1 cut(s) 154
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SaqAI TTAA 2 cut(s) 147, 322
SatI GCNGC 1 cut(s) 152
SetI ASST 9 cut(s) 33, 97, 106, 136, 144, 156, 231, 294, 303
Sse9I AATT 2 cut(s) 186, 200
TasI AATT 2 cut(s) 186, 200
Tru1I TTAA 2 cut(s) 147, 322
Tru9I TTAA 2 cut(s) 147, 322
TseI GCWGC 1 cut(s) 151
TspDTI ATGAA 2 cut(s) 252, 305
XmnI GAANNNNTTC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.