pycom03g15000

Rab3 GTPase-activating protein catalytic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0004994
Physical Location & Seq
Reverse (-)
16371626 .. 16373543
1918 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 792 bp
ATGCAGGCTTTCAAGGCTGCAAATCCTGGTTGTATTTTGGAAGACTTTGTGAGATGGCACTCCCCTCCTGACTGGACAGAGACTGAGCCAATTGATGAGGCTAAAGACTCGTTCGATGGTAGTGATGAATTGTCCACAAGAGGCTATCTCAGTAGCCGAATGCAAAAAGAAGGCAATTTGTGGCGTGAGTTTTGGGATACATCCAAACCAGTTCCAGCGGTTAAACAAGCACCCCTCTTTGATGAGGATTTAGCAGTGGAAGGTATCCTGGATGGTTTTGAGGACATATCACCTTCCGAACTTTTTCAGCAGCTGTTTGTTTCTTTGCTTGGTTTAGGATTTGTAATTGCTGAGGCTAAACTATCCGCGAGCAGTGATTTTTCAAAGCTGTTTTATGAGTGCAAGGAATATGTTGTTTCCACTTGTCAAAGCAGCACGTGGACTGAGAAGGTTGATGAGCTTTGCCAGGTATATGAAACAGTAGAGACTATGTTGGTCAATCCAGAGGAAGCACTAAGAGCAATGAAGCAGCCCGAAGAATCGATGACCCCTTCGGGAGAACCAAAAGGGCGTTTTAGGAGACTTACCCTTAACTTTGGTGGTAAAGACAGACAGTTGAGAAAATCAGGTTCGAAGGACCAGAAAAACTCGAAGAGCCCCGGTAGCCAACCGTTTTCGAGTTTCTTCGACAACAAGTCATCATTATTTTCAAAAAAGCCTCCTAAGCCTGAAAATACATCCCCTGCTGAAAAATCTTCGAATACAGTTGAAAGTGATTGGACGGTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD Rab3-GTPase_cat

Protein Analysis

264

Amino Acids

29.57

Weight (kDa)

4.78

Isoelectric Point (pI)

51.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rab3-GTPase_cat PF13890 1 - 93 2.4e-33 Rab3 GTPase-activating protein catalytic subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 368
AciI CCGC 2 cut(s) 218, 366
AcvI CACGTG 1 cut(s) 438
AgsI TTSAA 4 cut(s) 13, 384, 711, 770
AhdI GACNNNNNGTC 1 cut(s) 694
AjnI CCWGG 3 cut(s) 25, 267, 465
AluBI AGCT 3 cut(s) 313, 388, 460
AluI AGCT 3 cut(s) 313, 388, 460
Alw26I GTCTC 3 cut(s) 74, 479, 574
AlwNI CAGNNNCTG 2 cut(s) 83, 313
ApeKI GCWGC 4 cut(s) 17, 310, 432, 529
Asp700I GAANNNNTTC 1 cut(s) 303
AspS9I GGNCC 1 cut(s) 637
AsuC2I CCSGG 1 cut(s) 660
AsuHPI GGTGA 1 cut(s) 282
AsuII TTCGAA 2 cut(s) 632, 758
AvaII GGWCC 1 cut(s) 637
BanII GRGCYC 1 cut(s) 659
BbrPI CACGTG 1 cut(s) 438
BbsI GAAGAC 1 cut(s) 48
BbvCI CCTCAGC 1 cut(s) 351
BbvI GCAGC 4 cut(s) 4, 322, 444, 541
BccI CCATC 3 cut(s) 48, 110, 266
BciT130I CCWGG 3 cut(s) 27, 269, 467
BciVI GTATCC 2 cut(s) 190, 275
BcnI CCSGG 1 cut(s) 660
BcoDI GTCTC 3 cut(s) 74, 479, 574
BfuI GTATCC 2 cut(s) 190, 275
BisI GCNGC 4 cut(s) 18, 311, 433, 530
BlsI GCNGC 4 cut(s) 19, 312, 434, 531
Bme1390I CCNGG 4 cut(s) 27, 269, 467, 660
Bme18I GGWCC 1 cut(s) 637
BmeRI GACNNNNNGTC 1 cut(s) 694
BmgT120I GGNCC 1 cut(s) 637
BmrFI CCNGG 4 cut(s) 27, 269, 467, 660
BpiI GAAGAC 1 cut(s) 48
BplI GAGNNNNNCTC 2 cut(s) 132, 164
Bpu10I CCTNAGC 2 cut(s) 351, 723
Bpu14I TTCGAA 2 cut(s) 632, 758
BpuMI CCSGG 1 cut(s) 660
Bsa29I ATCGAT 1 cut(s) 542
BsaAI YACGTR 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 658
Bse1I ACTGG 2 cut(s) 77, 209
Bse3DI GCAATG 1 cut(s) 528
BseBI CCWGG 3 cut(s) 27, 269, 467
BseCI ATCGAT 1 cut(s) 542
BseDI CCNNGG 1 cut(s) 658
BseGI GGATG 3 cut(s) 200, 277, 737
BseMI GCAATG 1 cut(s) 528
BseMII CTCAG 4 cut(s) 75, 163, 342, 435
BseNI ACTGG 2 cut(s) 77, 209
BseXI GCAGC 4 cut(s) 4, 322, 444, 541
Bsh1236I CGCG 1 cut(s) 368
BshVI ATCGAT 1 cut(s) 542
BsiSI CCGG 1 cut(s) 660
BsmAI GTCTC 3 cut(s) 74, 479, 574
BsmI GAATGC 1 cut(s) 165
Bsp119I TTCGAA 2 cut(s) 632, 758
Bsp1286I GDGCHC 1 cut(s) 659
BspACI CCGC 2 cut(s) 218, 366
BspCNI CTCAG 4 cut(s) 76, 162, 343, 436
BspDI ATCGAT 1 cut(s) 542
BspFNI CGCG 1 cut(s) 368
BspQI GCTCTTC 1 cut(s) 647
BspT104I TTCGAA 2 cut(s) 632, 758
BsrDI GCAATG 1 cut(s) 528
BsrI ACTGG 2 cut(s) 77, 209
BssECI CCNNGG 1 cut(s) 658
Bst2UI CCWGG 3 cut(s) 27, 269, 467
Bst4CI ACNGT 5 cut(s) 481, 615, 672, 766, 784
Bst6I CTCTTC 1 cut(s) 647
BstBAI YACGTR 1 cut(s) 438
BstBI TTCGAA 2 cut(s) 632, 758
BstC8I GCNNGC 2 cut(s) 6, 370
BstDEI CTNAG 6 cut(s) 84, 149, 351, 444, 515, 723
BstF5I GGATG 3 cut(s) 200, 277, 737
BstFNI CGCG 1 cut(s) 368
BstMAI GTCTC 3 cut(s) 74, 479, 574
BstMWI GCNNNNNNNGC 4 cut(s) 14, 518, 663, 724
BstNI CCWGG 3 cut(s) 27, 269, 467
BstSCI CCNGG 4 cut(s) 25, 267, 465, 658
BstUI CGCG 1 cut(s) 368
BstV1I GCAGC 4 cut(s) 4, 322, 444, 541
BstV2I GAAGAC 1 cut(s) 48
Bsu15I ATCGAT 1 cut(s) 542
BsuI GTATCC 2 cut(s) 190, 275
BsuTUI ATCGAT 1 cut(s) 542
BtsCI GGATG 3 cut(s) 200, 277, 737
BtsI GCAGTG 2 cut(s) 261, 379
BtsIMutI CAGTG 2 cut(s) 261, 379
Cac8I GCNNGC 2 cut(s) 6, 370
CaiI CAGNNNCTG 2 cut(s) 83, 313
Cfr13I GGNCC 1 cut(s) 637
ClaI ATCGAT 1 cut(s) 542
DdeI CTNAG 6 cut(s) 84, 149, 351, 444, 515, 723
DriI GACNNNNNGTC 1 cut(s) 694
Eam1104I CTCTTC 1 cut(s) 647
Eam1105I GACNNNNNGTC 1 cut(s) 694
EarI CTCTTC 1 cut(s) 647
Eco24I GRGCYC 1 cut(s) 659
Eco47I GGWCC 1 cut(s) 637
Eco72I CACGTG 1 cut(s) 438
EcoRII CCWGG 3 cut(s) 25, 267, 465
EcoT38I GRGCYC 1 cut(s) 659
FaiI YATR 6 cut(s) 287, 396, 411, 472, 474, 491
Fnu4HI GCNGC 4 cut(s) 18, 311, 433, 530
FokI GGATG 3 cut(s) 187, 284, 724
FriOI GRGCYC 1 cut(s) 659
Fsp4HI GCNGC 4 cut(s) 18, 311, 433, 530
GluI GCNGC 4 cut(s) 18, 311, 433, 530
HapII CCGG 1 cut(s) 660
HinfI GANTC 2 cut(s) 107, 539
HpaII CCGG 1 cut(s) 660
HphI GGTGA 1 cut(s) 282
Hpy166II GTNNAC 2 cut(s) 135, 441
Hpy188I TCNGA 1 cut(s) 298
Hpy188III TCNNGA 3 cut(s) 68, 503, 555
Hpy8I GTNNAC 2 cut(s) 135, 441
HpyAV CCTTC 6 cut(s) 164, 254, 303, 442, 561, 628
HpyCH4III ACNGT 5 cut(s) 481, 615, 672, 766, 784
HpyCH4IV ACGT 1 cut(s) 437
HpyCH4V TGCA 4 cut(s) 4, 20, 163, 402
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 518, 663, 724
HpyF3I CTNAG 6 cut(s) 84, 149, 351, 444, 515, 723
HpySE526I ACGT 1 cut(s) 437
LguI GCTCTTC 1 cut(s) 647
Lsp1109I GCAGC 4 cut(s) 4, 322, 444, 541
MaeII ACGT 1 cut(s) 437
MboII GAAGA 5 cut(s) 53, 548, 664, 676, 747
MfeI CAATTG 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 659
MluCI AATT 4 cut(s) 90, 128, 175, 345
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 9 cut(s) 75, 91, 134, 238, 245, 274, 346, 499, 729
MroXI GAANNNNTTC 1 cut(s) 303
MseI TTAA 2 cut(s) 222, 591
MspA1I CMGCKG 2 cut(s) 218, 313
MspI CCGG 1 cut(s) 660
MspR9I CCNGG 4 cut(s) 27, 269, 467, 660
MunI CAATTG 1 cut(s) 90
Mva1269I GAATGC 1 cut(s) 165
MvaI CCWGG 3 cut(s) 27, 269, 467
MvnI CGCG 1 cut(s) 368
MwoI GCNNNNNNNGC 4 cut(s) 14, 518, 663, 724
NciI CCSGG 1 cut(s) 660
NspV TTCGAA 2 cut(s) 632, 758
PciSI GCTCTTC 1 cut(s) 647
PctI GAATGC 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 539
PfoI TCCNGGA 1 cut(s) 267
PkrI GCNGC 4 cut(s) 19, 312, 434, 531
PleI GAGTC 1 cut(s) 101
PmaCI CACGTG 1 cut(s) 438
PmlI CACGTG 1 cut(s) 438
PpsI GAGTC 1 cut(s) 101
Ppu21I YACGTR 1 cut(s) 438
Psp6I CCWGG 3 cut(s) 25, 267, 465
PspCI CACGTG 1 cut(s) 438
PspGI CCWGG 3 cut(s) 25, 267, 465
PspPI GGNCC 1 cut(s) 637
PstNI CAGNNNCTG 2 cut(s) 83, 313
PvuII CAGCTG 1 cut(s) 313
SapI GCTCTTC 1 cut(s) 647
SaqAI TTAA 2 cut(s) 222, 591
SatI GCNGC 4 cut(s) 18, 311, 433, 530
Sau96I GGNCC 1 cut(s) 637
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 4 cut(s) 27, 269, 467, 660
SduI GDGCHC 1 cut(s) 659
SetI ASST 9 cut(s) 265, 295, 315, 390, 440, 453, 462, 471, 631
SfuI TTCGAA 2 cut(s) 632, 758
SinI GGWCC 1 cut(s) 637
Sse9I AATT 4 cut(s) 90, 128, 175, 345
SsiI CCGC 2 cut(s) 218, 366
StyD4I CCNGG 4 cut(s) 25, 267, 465, 658
TaaI ACNGT 5 cut(s) 481, 615, 672, 766, 784
TaiI ACGT 1 cut(s) 440
TaqI TCGA 7 cut(s) 114, 542, 632, 650, 677, 687, 758
TasI AATT 4 cut(s) 90, 128, 175, 345
TfiI GAWTC 1 cut(s) 539
Tru1I TTAA 2 cut(s) 222, 591
Tru9I TTAA 2 cut(s) 222, 591
TscAI CASTG 2 cut(s) 261, 379
TseI GCWGC 4 cut(s) 17, 310, 432, 529
TspDTI ATGAA 3 cut(s) 141, 489, 539
TspRI CASTG 2 cut(s) 261, 379
VpaK11BI GGWCC 1 cut(s) 637
XmnI GAANNNNTTC 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.