Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007370

Physical Location & Seq

Genomic Coordinates Reverse (-)

17915064 .. 17918841

Gene Structure 3778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g16750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCCTAGTGAGCAAGAAATTTCTCAGACTTCTTCACGCATGCATAACTACATCTCCGACGATGAATCTGAAACTGAAGATCACGAAGATCACGAGGTACAAGAAGACGACGAAGAGAGTGATGGAAGTAGTACATCTCATGGAGGAAATTTTGAGAACTGCTTGTACAACAACATGTGTTCATCGCGGCAGAGGAGGAGGCCCGGTTGGTCACTCGGCCAAGTTCTCGACCCGAGAGCGAAATGGGTTCAAGAATGGAACAGGGTTTTCCTCCTTGTGTGTGCAACGGGGCTCATCATAGACCCTCTCTTCTTCTATGCCTTATCCATTAGCCAGAGCTGTATGTGCCTGTTTGTGGACGGGTGGTTCGCCATCACGGTGACGGTGCTCCGCTGCATGACGGACGTGTTGCACTTGTGGAACATGTGGTTGCAGCTCAAGATGGCCAAACGCTACTCCTTCACGGCCATGGTTGGTGGGGATGGTGGAGGAGCCAATGGGCTGCGCGACACTAGTCCAAGGTCTGTGGCTCTCAAGTACTTGAAGTCGAAGAAGGGGTTTCTGTTTGACCTCTTTGTTATTATCCCAATACCCCAGATAATATTGTGGGTGGTAATTCCTTCGCTATTGGAGAGAGGATCGGTGACCGTAGTGATGACAGTGTTCTTGATGTTTTTCTTCCAATATCTCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0008324 GO:0009626 GO:0009987 GO:0012501 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0033554 GO:0034050 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

232

Amino Acids

26.42

Weight (kDa)

5.09

Isoelectric Point (pI)

61.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54250 AT5G54250 AT5G54250 AT5G54250
fragaria_vesca	FvH4_3g21060
malus_domestica	MD03G1218000.v1.1 MD11G1235800.v1.1
prunus_persica	Prupe.4G191200_v2.0.a1
pyrus_communis	pycom03g16750 pycom1049g00060 pycom1049g00070 pycom11g20730
rosa_chinensis	RchiOBHm_Chr5g0036081 RchiOBHm_Chr5g0036091
rosa_laevigata	RLG00000033664
rosa_multiflora	Rmu_sc0000382.1_g000031
rosa_roxburghii	Rroxscaffold_1G00044670
rosa_rugosa	Rorug05G0152600 Rorug05G0152600 Rorug05G0152600
rosa_samantha	Rh5AG246800 Rh5BG247100 Rh5CG278200 Rh5DG255700
rosa_wichuraiana	Rw5G022650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	187, 507
AciI	CCGC	2 cut(s)	187, 391
AclWI	GGATC	1 cut(s)	646
AcoI	YGGCCR	3 cut(s)	217, 444, 465
AcsI	RAATTY	2 cut(s)	18, 148
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	4 cut(s)	99, 133, 167, 539
AfiI	CCNNNNNNNGG	1 cut(s)	355
AflIII	ACRYGT	3 cut(s)	174, 405, 423
AgsI	TTSAA	2 cut(s)	251, 544
AhlI	ACTAGT	1 cut(s)	512
AjiI	CACGTC	1 cut(s)	406
AloI	GAACNNNNNNTCC	2 cut(s)	350, 382
AluBI	AGCT	2 cut(s)	339, 436
AluI	AGCT	2 cut(s)	339, 436
Alw21I	GWGCWC	1 cut(s)	390
AlwI	GGATC	1 cut(s)	646
Ama87I	CYCGRG	1 cut(s)	232
AoxI	GGCC	4 cut(s)	200, 217, 444, 465
ApeKI	GCWGC	3 cut(s)	393, 433, 502
ApoI	RAATTY	2 cut(s)	18, 148
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AspLEI	GCGC	1 cut(s)	507
AspS9I	GGNCC	1 cut(s)	201
AsuC2I	CCSGG	1 cut(s)	204
AsuHPI	GGTGA	2 cut(s)	391, 655
AvaI	CYCGRG	1 cut(s)	232
BalI	TGGCCA	1 cut(s)	446
BanII	GRGCYC	1 cut(s)	294
BauI	CACGAG	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	3 cut(s)	380, 445, 489
BccI	CCATC	4 cut(s)	116, 380, 436, 476
BceAI	ACGGC	1 cut(s)	480
BcnI	CCSGG	1 cut(s)	204
BcuI	ACTAGT	1 cut(s)	512
BfaI	CTAG	2 cut(s)	6, 513
BisI	GCNGC	4 cut(s)	188, 394, 434, 503
BlsI	GCNGC	4 cut(s)	189, 395, 435, 504
BmcAI	AGTACT	1 cut(s)	539
Bme1390I	CCNGG	1 cut(s)	204
BmeT110I	CYCGRG	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	1 cut(s)	493
BmrFI	CCNGG	1 cut(s)	204
BoxI	GACNNNNGTC	1 cut(s)	513
BpiI	GAAGAC	1 cut(s)	111
BpuEI	CTTGAG	2 cut(s)	422, 518
BpuMI	CCSGG	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	468, 518
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 190, 220
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
BseDI	CCNNGG	2 cut(s)	468, 518
BseGI	GGATG	1 cut(s)	487
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMII	CTCAG	1 cut(s)	38
BseRI	GAGGAG	3 cut(s)	208, 211, 504
BseXI	GCAGC	3 cut(s)	380, 445, 489
Bsh1236I	CGCG	2 cut(s)	187, 507
BshFI	GGCC	4 cut(s)	202, 219, 446, 467
BsiHKAI	GWGCWC	1 cut(s)	390
BsiHKCI	CYCGRG	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	204
BslI	CCNNNNNNNGG	1 cut(s)	355
BsnI	GGCC	4 cut(s)	202, 219, 446, 467
BsoBI	CYCGRG	1 cut(s)	232
Bsp1286I	GDGCHC	2 cut(s)	294, 390
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	79, 88, 638
Bsp19I	CCATGG	1 cut(s)	468
BspACI	CCGC	2 cut(s)	187, 391
BspANI	GGCC	4 cut(s)	202, 219, 446, 467
BspCNI	CTCAG	1 cut(s)	37
BspFNI	CGCG	2 cut(s)	187, 507
BspLI	GGNNCC	1 cut(s)	493
BspPI	GGATC	1 cut(s)	646
BsrGI	TGTACA	1 cut(s)	165
BssECI	CCNNGG	2 cut(s)	468, 518
BssMI	GATC	3 cut(s)	79, 88, 638
BssSI	CACGAG	1 cut(s)	92
BssT1I	CCWWGG	2 cut(s)	468, 518
Bst2BI	CACGAG	1 cut(s)	92
Bst4CI	ACNGT	4 cut(s)	379, 385, 649, 661
Bst6I	CTCTTC	2 cut(s)	108, 314
BstAUI	TGTACA	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	24
BstDSI	CCRYGG	1 cut(s)	468
BstEII	GGTNACC	1 cut(s)	643
BstF5I	GGATG	1 cut(s)	487
BstFNI	CGCG	2 cut(s)	187, 507
BstHHI	GCGC	1 cut(s)	507
BstKTI	GATC	3 cut(s)	82, 91, 641
BstMBI	GATC	3 cut(s)	79, 88, 638
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 345
BstNSI	RCATGY	3 cut(s)	43, 178, 427
BstPAI	GACNNNNGTC	1 cut(s)	513
BstPI	GGTNACC	1 cut(s)	643
BstSCI	CCNGG	1 cut(s)	202
BstUI	CGCG	2 cut(s)	187, 507
BstV1I	GCAGC	3 cut(s)	380, 445, 489
BstV2I	GAAGAC	1 cut(s)	111
BsuRI	GGCC	4 cut(s)	202, 219, 446, 467
BtgI	CCRYGG	1 cut(s)	468
BtgZI	GCGATG	1 cut(s)	168
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	487
BtsIMutI	CAGTG	1 cut(s)	666
Cac8I	GCNNGC	1 cut(s)	41
CfoI	GCGC	1 cut(s)	507
Cfr13I	GGNCC	1 cut(s)	201
Csp6I	GTAC	4 cut(s)	98, 132, 166, 538
CspCI	CAANNNNNGTGG	2 cut(s)	507, 542
CviAII	CATG	6 cut(s)	40, 140, 175, 397, 424, 469
CviQI	GTAC	4 cut(s)	98, 132, 166, 538
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	3 cut(s)	81, 90, 640
DpnII	GATC	3 cut(s)	79, 88, 638
EaeI	YGGCCR	3 cut(s)	217, 444, 465
Eam1104I	CTCTTC	2 cut(s)	108, 314
EarI	CTCTTC	2 cut(s)	108, 314
Eco130I	CCWWGG	2 cut(s)	468, 518
Eco24I	GRGCYC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	232
Eco91I	GGTNACC	1 cut(s)	643
EcoO65I	GGTNACC	1 cut(s)	643
EcoT14I	CCWWGG	2 cut(s)	468, 518
EcoT22I	ATGCAT	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	294
ErhI	CCWWGG	2 cut(s)	468, 518
FaeI	CATG	6 cut(s)	43, 143, 178, 400, 427, 472
FatI	CATG	6 cut(s)	39, 139, 174, 396, 423, 468
Fnu4HI	GCNGC	4 cut(s)	188, 394, 434, 503
FokI	GGATG	1 cut(s)	494
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	4 cut(s)	188, 394, 434, 503
FspBI	CTAG	2 cut(s)	6, 513
GlaI	GCGC	1 cut(s)	506
GluI	GCNGC	4 cut(s)	188, 394, 434, 503
HaeIII	GGCC	4 cut(s)	202, 219, 446, 467
HapII	CCGG	1 cut(s)	204
HhaI	GCGC	1 cut(s)	507
Hin1II	CATG	6 cut(s)	43, 143, 178, 400, 427, 472
Hin6I	GCGC	1 cut(s)	505
HinP1I	GCGC	1 cut(s)	505
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	2 cut(s)	391, 655
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	3 cut(s)	27, 58, 70
Hpy188III	TCNNGA	6 cut(s)	83, 92, 227, 251, 439, 667
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	2 cut(s)	62, 113
HpyAV	CCTTC	3 cut(s)	469, 547, 630
HpyCH4III	ACNGT	4 cut(s)	379, 385, 649, 661
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	5 cut(s)	43, 284, 396, 412, 433
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 345
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	6 cut(s)	43, 143, 178, 400, 427, 472
HspAI	GCGC	1 cut(s)	505
Kzo9I	GATC	3 cut(s)	79, 88, 638
LmnI	GCTCC	2 cut(s)	393, 491
LpnPI	CCDG	5 cut(s)	217, 247, 347, 362, 608
Lsp1109I	GCAGC	3 cut(s)	380, 445, 489
MaeI	CTAG	2 cut(s)	6, 513
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	3 cut(s)	210, 379, 643
MalI	GATC	3 cut(s)	81, 90, 640
MboI	GATC	3 cut(s)	79, 88, 638
MboII	GAAGA	9 cut(s)	24, 89, 98, 116, 125, 301, 304, 562, 670
MhlI	GDGCHC	2 cut(s)	294, 390
MlsI	TGGCCA	1 cut(s)	446
MluCI	AATT	3 cut(s)	18, 148, 615
MluNI	TGGCCA	1 cut(s)	446
MmeI	TCCRAC	1 cut(s)	81
Mox20I	TGGCCA	1 cut(s)	446
Mph1103I	ATGCAT	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	446
MslI	CAYNNNNRTG	2 cut(s)	377, 467
Msp20I	TGGCCA	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	393
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	204
MvnI	CGCG	2 cut(s)	187, 507
MwoI	GCNNNNNNNGC	2 cut(s)	10, 345
NciI	CCSGG	1 cut(s)	204
NcoI	CCATGG	1 cut(s)	468
NdeII	GATC	3 cut(s)	79, 88, 638
NlaIII	CATG	6 cut(s)	43, 143, 178, 400, 427, 472
NlaIV	GGNNCC	1 cut(s)	493
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	3 cut(s)	210, 379, 643
NsiI	ATGCAT	1 cut(s)	45
NspI	RCATGY	3 cut(s)	43, 178, 427
PaeI	GCATGC	1 cut(s)	43
PciI	ACATGT	2 cut(s)	174, 423
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	65
PkrI	GCNGC	4 cut(s)	189, 395, 435, 504
PscI	ACATGT	2 cut(s)	174, 423
PshAI	GACNNNNGTC	1 cut(s)	513
PspEI	GGTNACC	1 cut(s)	643
PspN4I	GGNNCC	1 cut(s)	493
PspPI	GGNCC	1 cut(s)	201
PsrI	GAACNNNNNNTAC	2 cut(s)	149, 181
RsaI	GTAC	4 cut(s)	99, 133, 167, 539
RsaNI	GTAC	4 cut(s)	98, 132, 166, 538
RseI	CAYNNNNRTG	2 cut(s)	377, 467
SatI	GCNGC	4 cut(s)	188, 394, 434, 503
Sau3AI	GATC	3 cut(s)	79, 88, 638
Sau96I	GGNCC	1 cut(s)	201
ScaI	AGTACT	1 cut(s)	539
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	2 cut(s)	294, 390
SetI	ASST	6 cut(s)	99, 341, 408, 438, 524, 573
SmiMI	CAYNNNNRTG	2 cut(s)	377, 467
SmlI	CTYRAG	2 cut(s)	437, 533
SmoI	CTYRAG	2 cut(s)	437, 533
SpeI	ACTAGT	1 cut(s)	512
SphI	GCATGC	1 cut(s)	43
Sse9I	AATT	3 cut(s)	18, 148, 615
SsiI	CCGC	2 cut(s)	187, 391
SspI	AATATT	1 cut(s)	603
SspMI	CTAG	2 cut(s)	6, 513
StyD4I	CCNGG	1 cut(s)	202
StyI	CCWWGG	2 cut(s)	468, 518
TaaI	ACNGT	4 cut(s)	379, 385, 649, 661
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	2 cut(s)	228, 548
TasI	AATT	3 cut(s)	18, 148, 615
TatI	WGTACW	3 cut(s)	131, 165, 537
TauI	GCSGC	1 cut(s)	190
TfiI	GAWTC	1 cut(s)	65
TscAI	CASTG	1 cut(s)	666
TseFI	GTSAC	3 cut(s)	210, 379, 643
TseI	GCWGC	3 cut(s)	393, 433, 502
Tsp45I	GTSAC	3 cut(s)	210, 379, 643
TspDTI	ATGAA	2 cut(s)	78, 171
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	1 cut(s)	666
XapI	RAATTY	2 cut(s)	18, 148
XceI	RCATGY	3 cut(s)	43, 178, 427
XspI	CTAG	2 cut(s)	6, 513
ZrmI	AGTACT	1 cut(s)	539
Zsp2I	ATGCAT	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.