Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007370

Physical Location & Seq

Genomic Coordinates Forward (+)

30207920 .. 30211543

Gene Structure 3624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31490

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGCCTATAGAGCAAGAGATTTCTCACTCGTCGCGCATGCACCACTACATGACACAAGACGACGATGACAGCTCTGAGGTAGAAGAGAGAGTATTTGAGGACTACGAAGACGACGACGAAGACGCAGAAGATGAGGATGACAGTGGCAGAGGGAGTAAATTCTGCATGTTCACTGCGTGCGGTGGTGGCTCTGGCCGCAGAAGACCGAGTTGGTCTCTGGGCCAGGTCCTGGACCCGCGAGCCAAGTGGATCCAGGAATGGAACCGGGTTTTCCTGCTGGTGTGCGCCACCGGGCTCGTCATAGACCCTCTGTTCTTCTACTCTCTGTCAATTAGCGAGAGATGTATGTGTCTGTTTGTGGACGGCTGGTTTGCGATAACGGTGACGGTGCTCCGGTGCATGACGGACGTGTTGCACGTGTGGAACATGTGGCTGCAGCTGAAGACGGCGAAGAGGTACTCCTTCACGGCGATGGTTGGTGGTGGTGAAGGGACAAACAATGGGCTGCGTGACACCAGTCCTCGCTCTGTGGCGATGAGATATTTGAAGGGCAAGAAGGGGTTTTTGTTTGACCTCTTTGTTATTCTGCCTATCCCCCAGATAGTAGTATGGGTAGTGATTCCTGCATTATTGGAGAAGGGATCGGTGACGGTGGTGATGACAGTGTTCTTGATGTTTTTCATTCAATATCTCCCGAAAATCTATCACTCGGTTTGCCTCTTGCGCCGAATGCAAAACCTCTCTGGCTACATCTTTGGCACCGTTTGGTGGGGAATAGCCCTCAACTTGATTGCATATTTTGTTGCGGCCCATGCTGCAGGAGCATGTTGGTACTTGTTAGGAATCCAAAGGGCAGAGAAGTGCCTGAAAGAGCAATGCAGGGAAGCAGCTGGTTGTGGAATGAGAATATTATCTTGCAAAGACCAATTTTATTATGGAAAAGAAACCAGCTTGAGAGACAGAGCAAGAATAGCATGGGCAAACAACAAGCAAGCAAGGTCTACGTGCTTGGAGAGTCCAGACCATTACGATTATGGAGCCTTTGCATGGACTGTTCAACTTTTCGCAAATGACAGCCGCTTGGAAAAGATACTTTTCCCTATCTTTTGGGGCCTAATGACTCTCAGGCACTCACTGCACTCTCTTATCATACACATACATATTCACCTAGACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0008324 GO:0009626 GO:0009987 GO:0012501 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0033554 GO:0034050 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

392

Amino Acids

45.0

Weight (kDa)

6.31

Isoelectric Point (pI)

52.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54250 AT5G54250 AT5G54250 AT5G54250
fragaria_vesca	FvH4_3g21060
malus_domestica	MD03G1218000.v1.1 MD11G1235800.v1.1
prunus_persica	Prupe.4G191200_v2.0.a1
pyrus_communis	pycom03g16750 pycom1049g00060 pycom1049g00070 pycom11g20730
rosa_chinensis	RchiOBHm_Chr5g0036081 RchiOBHm_Chr5g0036091
rosa_laevigata	RLG00000033664
rosa_multiflora	Rmu_sc0000382.1_g000031
rosa_roxburghii	Rroxscaffold_1G00044670
rosa_rugosa	Rorug05G0152600 Rorug05G0152600 Rorug05G0152600
rosa_samantha	Rh5AG246800 Rh5BG247100 Rh5CG278200 Rh5DG255700
rosa_wichuraiana	Rw5G022650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	758
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	1001
AccII	CGCG	2 cut(s)	34, 238
AciI	CCGC	5 cut(s)	180, 196, 236, 806, 1078
AclWI	GGATC	3 cut(s)	244, 257, 649
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	1 cut(s)	461
AcvI	CACGTG	1 cut(s)	418
AdeI	CACNNNGTG	1 cut(s)	177
AfaI	GTAC	2 cut(s)	458, 833
AfiI	CCNNNNNNNGG	3 cut(s)	229, 768, 1047
AflIII	ACRYGT	3 cut(s)	408, 417, 426
AgsI	TTSAA	3 cut(s)	547, 686, 1058
AjiI	CACGTC	1 cut(s)	409
AjnI	CCWGG	3 cut(s)	222, 228, 252
AjuI	GAANNNNNNNTTGG	2 cut(s)	193, 225
AluBI	AGCT	4 cut(s)	72, 439, 890, 951
AluI	AGCT	4 cut(s)	72, 439, 890, 951
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	2 cut(s)	219, 951
AlwI	GGATC	3 cut(s)	244, 257, 649
AlwNI	CAGNNNCTG	1 cut(s)	229
AoxI	GGCC	4 cut(s)	193, 220, 807, 1111
ApeKI	GCWGC	5 cut(s)	433, 436, 505, 815, 887
ApoI	RAATTY	1 cut(s)	158
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
AspLEI	GCGC	3 cut(s)	36, 287, 726
AspS9I	GGNCC	5 cut(s)	220, 226, 232, 808, 1111
AsuC2I	CCSGG	2 cut(s)	266, 292
AsuHPI	GGTGA	5 cut(s)	394, 497, 658, 667, 1157
AvaII	GGWCC	2 cut(s)	226, 232
BamHI	GGATCC	1 cut(s)	249
BanI	GGYRCC	1 cut(s)	758
BanII	GRGCYC	1 cut(s)	297
BbrPI	CACGTG	1 cut(s)	418
BbsI	GAAGAC	4 cut(s)	114, 126, 208, 449
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	5 cut(s)	420, 448, 492, 802, 899
BccI	CCATC	1 cut(s)	466
BceAI	ACGGC	3 cut(s)	379, 462, 483
BciT130I	CCWGG	3 cut(s)	224, 230, 254
BcnI	CCSGG	2 cut(s)	266, 292
BcoDI	GTCTC	2 cut(s)	219, 951
BfaI	CTAG	1 cut(s)	1169
BfmI	CTRYAG	3 cut(s)	6, 434, 816
BisI	GCNGC	8 cut(s)	196, 434, 437, 506, 807, 816, 888, 1078
BlsI	GCNGC	8 cut(s)	197, 435, 438, 507, 808, 817, 889, 1079
Bme1390I	CCNGG	5 cut(s)	224, 230, 254, 266, 292
Bme18I	GGWCC	2 cut(s)	226, 232
BmgBI	CACGTC	1 cut(s)	409
BmgT120I	GGNCC	5 cut(s)	220, 226, 232, 808, 1111
BmiI	GGNNCC	6 cut(s)	234, 251, 263, 760, 1039, 1112
BmrFI	CCNGG	5 cut(s)	224, 230, 254, 266, 292
BoxI	GACNNNNGTC	1 cut(s)	516
BpiI	GAAGAC	4 cut(s)	114, 126, 208, 449
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
BpuEI	CTTGAG	1 cut(s)	973
BpuMI	CCSGG	2 cut(s)	266, 292
BsaAI	YACGTR	2 cut(s)	418, 1005
BsaI	GGTCTC	1 cut(s)	219
BsaWI	WCCGGW	1 cut(s)	393
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 768, 1047
Bse1I	ACTGG	1 cut(s)	516
Bse3DI	GCAATG	1 cut(s)	881
BseBI	CCWGG	3 cut(s)	224, 230, 254
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	3 cut(s)	229, 768, 1047
BseMI	GCAATG	1 cut(s)	881
BseMII	CTCAG	2 cut(s)	66, 1138
BseNI	ACTGG	1 cut(s)	516
BseXI	GCAGC	5 cut(s)	420, 448, 492, 802, 899
BsgI	GTGCAG	1 cut(s)	1121
Bsh1236I	CGCG	2 cut(s)	34, 238
BshFI	GGCC	4 cut(s)	195, 222, 809, 1113
BshNI	GGYRCC	1 cut(s)	758
BsiHKAI	GWGCWC	1 cut(s)	393
BsiSI	CCGG	3 cut(s)	265, 291, 394
BslFI	GGGAC	1 cut(s)	505
BslI	CCNNNNNNNGG	3 cut(s)	229, 768, 1047
BsmAI	GTCTC	2 cut(s)	219, 951
BsmFI	GGGAC	1 cut(s)	505
BsmI	GAATGC	1 cut(s)	735
BsnI	GGCC	4 cut(s)	195, 222, 809, 1113
Bso31I	GGTCTC	1 cut(s)	219
Bsp1286I	GDGCHC	2 cut(s)	297, 393
Bsp143I	GATC	2 cut(s)	249, 641
BspACI	CCGC	5 cut(s)	180, 196, 236, 806, 1078
BspANI	GGCC	4 cut(s)	195, 222, 809, 1113
BspCNI	CTCAG	2 cut(s)	67, 1137
BspFNI	CGCG	2 cut(s)	34, 238
BspLI	GGNNCC	6 cut(s)	234, 251, 263, 760, 1039, 1112
BspMAI	CTGCAG	2 cut(s)	438, 820
BspPI	GGATC	3 cut(s)	244, 257, 649
BspT107I	GGYRCC	1 cut(s)	758
BspTNI	GGTCTC	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	881
BsrI	ACTGG	1 cut(s)	516
BssMI	GATC	2 cut(s)	249, 641
Bst2UI	CCWGG	3 cut(s)	224, 230, 254
Bst4CI	ACNGT	7 cut(s)	143, 382, 388, 652, 664, 763, 1054
Bst6I	CTCTTC	2 cut(s)	78, 446
BstAPI	GCANNNNNTGC	1 cut(s)	1135
BstBAI	YACGTR	2 cut(s)	418, 1005
BstC8I	GCNNGC	4 cut(s)	38, 178, 240, 993
BstDEI	CTNAG	2 cut(s)	75, 1124
BstF5I	GGATG	1 cut(s)	142
BstFNI	CGCG	2 cut(s)	34, 238
BstHHI	GCGC	3 cut(s)	36, 287, 726
BstKTI	GATC	2 cut(s)	252, 644
BstMAI	GTCTC	2 cut(s)	219, 951
BstMBI	GATC	2 cut(s)	249, 641
BstNI	CCWGG	3 cut(s)	224, 230, 254
BstNSI	RCATGY	4 cut(s)	40, 169, 430, 828
BstPAI	GACNNNNGTC	1 cut(s)	516
BstSCI	CCNGG	5 cut(s)	222, 228, 252, 264, 290
BstSFI	CTRYAG	3 cut(s)	6, 434, 816
BstUI	CGCG	2 cut(s)	34, 238
BstV1I	GCAGC	5 cut(s)	420, 448, 492, 802, 899
BstV2I	GAAGAC	4 cut(s)	114, 126, 208, 449
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BsuRI	GGCC	4 cut(s)	195, 222, 809, 1113
BtgZI	GCGATG	2 cut(s)	485, 548
BtrI	CACGTC	1 cut(s)	409
BtsCI	GGATG	1 cut(s)	142
BtsI	GCAGTG	2 cut(s)	171, 1133
BtsIMutI	CAGTG	4 cut(s)	148, 171, 669, 1133
Cac8I	GCNNGC	4 cut(s)	38, 178, 240, 993
CaiI	CAGNNNCTG	1 cut(s)	229
CfoI	GCGC	3 cut(s)	36, 287, 726
Cfr13I	GGNCC	5 cut(s)	220, 226, 232, 808, 1111
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	457, 832
CviAII	CATG	9 cut(s)	37, 49, 166, 400, 427, 812, 825, 975, 1047
CviQI	GTAC	2 cut(s)	457, 832
DdeI	CTNAG	2 cut(s)	75, 1124
DpnI	GATC	2 cut(s)	251, 643
DpnII	GATC	2 cut(s)	249, 641
DraIII	CACNNNGTG	1 cut(s)	177
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	2 cut(s)	78, 446
EarI	CTCTTC	2 cut(s)	78, 446
Eco24I	GRGCYC	1 cut(s)	297
Eco31I	GGTCTC	1 cut(s)	219
Eco47I	GGWCC	2 cut(s)	226, 232
Eco57I	CTGAAG	1 cut(s)	461
Eco72I	CACGTG	1 cut(s)	418
EcoO109I	RGGNCCY	2 cut(s)	226, 1111
EcoRII	CCWGG	3 cut(s)	222, 228, 252
EcoT38I	GRGCYC	1 cut(s)	297
FaeI	CATG	9 cut(s)	40, 52, 169, 403, 430, 815, 828, 978, 1050
FaqI	GGGAC	1 cut(s)	505
FatI	CATG	9 cut(s)	36, 48, 165, 399, 426, 811, 824, 974, 1046
FauI	CCCGC	1 cut(s)	243
FblI	GTMKAC	1 cut(s)	1001
Fnu4HI	GCNGC	8 cut(s)	196, 434, 437, 506, 807, 816, 888, 1078
FokI	GGATG	1 cut(s)	149
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	8 cut(s)	196, 434, 437, 506, 807, 816, 888, 1078
FspBI	CTAG	1 cut(s)	1169
GlaI	GCGC	3 cut(s)	35, 286, 725
GluI	GCNGC	8 cut(s)	196, 434, 437, 506, 807, 816, 888, 1078
HaeIII	GGCC	4 cut(s)	195, 222, 809, 1113
HapII	CCGG	3 cut(s)	265, 291, 394
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	3 cut(s)	36, 287, 726
Hin1II	CATG	9 cut(s)	40, 52, 169, 403, 430, 815, 828, 978, 1050
Hin6I	GCGC	3 cut(s)	34, 285, 724
HinP1I	GCGC	3 cut(s)	34, 285, 724
HinfI	GANTC	4 cut(s)	619, 843, 1015, 1120
HpaII	CCGG	3 cut(s)	265, 291, 394
HphI	GGTGA	5 cut(s)	394, 497, 658, 667, 1157
Hpy166II	GTNNAC	3 cut(s)	171, 361, 1002
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	3 cut(s)	670, 694, 1019
Hpy8I	GTNNAC	3 cut(s)	171, 361, 1002
Hpy99I	CGWCG	4 cut(s)	34, 65, 116, 119
HpyAV	CCTTC	5 cut(s)	472, 482, 541, 550, 631
HpyCH4III	ACNGT	7 cut(s)	143, 382, 388, 652, 664, 763, 1054
HpyCH4IV	ACGT	3 cut(s)	408, 417, 1004
HpyF3I	CTNAG	2 cut(s)	75, 1124
HpySE526I	ACGT	3 cut(s)	408, 417, 1004
Hsp92II	CATG	9 cut(s)	40, 52, 169, 403, 430, 815, 828, 978, 1050
HspAI	GCGC	3 cut(s)	34, 285, 724
Kzo9I	GATC	2 cut(s)	249, 641
LmnI	GCTCC	3 cut(s)	396, 821, 1037
Lsp1109I	GCAGC	5 cut(s)	420, 448, 492, 802, 899
MaeI	CTAG	1 cut(s)	1169
MaeII	ACGT	3 cut(s)	408, 417, 1004
MaeIII	GTNAC	3 cut(s)	382, 509, 646
MalI	GATC	2 cut(s)	251, 643
MboI	GATC	2 cut(s)	249, 641
MboII	GAAGA	8 cut(s)	95, 119, 131, 140, 213, 307, 454, 463
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	2 cut(s)	297, 393
MluCI	AATT	3 cut(s)	158, 330, 926
MlyI	GAGTC	2 cut(s)	1024, 1114
MslI	CAYNNNNRTG	1 cut(s)	470
MspA1I	CMGCKG	2 cut(s)	439, 890
MspI	CCGG	3 cut(s)	265, 291, 394
MspR9I	CCNGG	5 cut(s)	224, 230, 254, 266, 292
Mva1269I	GAATGC	1 cut(s)	735
MvaI	CCWGG	3 cut(s)	224, 230, 254
MvnI	CGCG	2 cut(s)	34, 238
NciI	CCSGG	2 cut(s)	266, 292
NdeII	GATC	2 cut(s)	249, 641
NlaIII	CATG	9 cut(s)	40, 52, 169, 403, 430, 815, 828, 978, 1050
NlaIV	GGNNCC	6 cut(s)	234, 251, 263, 760, 1039, 1112
NmuCI	GTSAC	3 cut(s)	382, 509, 646
NspI	RCATGY	4 cut(s)	40, 169, 430, 828
PaeI	GCATGC	1 cut(s)	40
PciI	ACATGT	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 414
PctI	GAATGC	1 cut(s)	735
PfeI	GAWTC	2 cut(s)	619, 843
PflMI	CCANNNNNTGG	1 cut(s)	229
PfoI	TCCNGGA	2 cut(s)	228, 252
PkrI	GCNGC	8 cut(s)	197, 435, 438, 507, 808, 817, 889, 1079
PleI	GAGTC	2 cut(s)	1023, 1114
PmaCI	CACGTG	1 cut(s)	418
PmlI	CACGTG	1 cut(s)	418
PpsI	GAGTC	2 cut(s)	1023, 1114
Ppu21I	YACGTR	2 cut(s)	418, 1005
PpuMI	RGGWCCY	1 cut(s)	226
PscI	ACATGT	1 cut(s)	426
PshAI	GACNNNNGTC	1 cut(s)	516
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	3 cut(s)	222, 228, 252
PspCI	CACGTG	1 cut(s)	418
PspGI	CCWGG	3 cut(s)	222, 228, 252
PspN4I	GGNNCC	6 cut(s)	234, 251, 263, 760, 1039, 1112
PspPI	GGNCC	5 cut(s)	220, 226, 232, 808, 1111
PspPPI	RGGWCCY	1 cut(s)	226
PstI	CTGCAG	2 cut(s)	438, 820
PstNI	CAGNNNCTG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	249
PvuII	CAGCTG	2 cut(s)	439, 890
RsaI	GTAC	2 cut(s)	458, 833
RsaNI	GTAC	2 cut(s)	457, 832
RseI	CAYNNNNRTG	1 cut(s)	470
SatI	GCNGC	8 cut(s)	196, 434, 437, 506, 807, 816, 888, 1078
Sau3AI	GATC	2 cut(s)	249, 641
Sau96I	GGNCC	5 cut(s)	220, 226, 232, 808, 1111
SchI	GAGTC	2 cut(s)	1024, 1114
ScrFI	CCNGG	5 cut(s)	224, 230, 254, 266, 292
SduI	GDGCHC	2 cut(s)	297, 393
SfcI	CTRYAG	3 cut(s)	6, 434, 816
SinI	GGWCC	2 cut(s)	226, 232
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	952
SmoI	CTYRAG	1 cut(s)	952
SphI	GCATGC	1 cut(s)	40
Sse9I	AATT	3 cut(s)	158, 330, 926
SsiI	CCGC	5 cut(s)	180, 196, 236, 806, 1078
SspI	AATATT	1 cut(s)	909
SspMI	CTAG	1 cut(s)	1169
StyD4I	CCNGG	5 cut(s)	222, 228, 252, 264, 290
TaaI	ACNGT	7 cut(s)	143, 382, 388, 652, 664, 763, 1054
TaiI	ACGT	3 cut(s)	411, 420, 1007
TaqII	GACCGA	1 cut(s)	220
TasI	AATT	3 cut(s)	158, 330, 926
TauI	GCSGC	3 cut(s)	198, 809, 1080
TfiI	GAWTC	2 cut(s)	619, 843
TscAI	CASTG	4 cut(s)	148, 178, 669, 1140
TseFI	GTSAC	3 cut(s)	382, 509, 646
TseI	GCWGC	5 cut(s)	433, 436, 505, 815, 887
Tsp45I	GTSAC	3 cut(s)	382, 509, 646
TspDTI	ATGAA	1 cut(s)	670
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	4 cut(s)	148, 178, 669, 1140
Van91I	CCANNNNNTGG	1 cut(s)	229
VpaK11BI	GGWCC	2 cut(s)	226, 232
XapI	RAATTY	1 cut(s)	158
XceI	RCATGY	4 cut(s)	40, 169, 430, 828
XcmI	CCANNNNNNNNNTGG	2 cut(s)	932, 1031
XmiI	GTMKAC	1 cut(s)	1001
XspI	CTAG	1 cut(s)	1169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.