cyclic nucleotide-gated ion channel
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G54250 AT5G54250 AT5G54250 AT5G54250 |
| fragaria_vesca | FvH4_3g21060 |
| malus_domestica | MD03G1218000.v1.1 MD11G1235800.v1.1 |
| prunus_persica | Prupe.4G191200_v2.0.a1 |
| pyrus_communis | pycom03g16750 pycom1049g00060 pycom1049g00070 pycom11g20730 |
| rosa_chinensis | RchiOBHm_Chr5g0036081 RchiOBHm_Chr5g0036091 |
| rosa_laevigata | RLG00000033664 |
| rosa_multiflora | Rmu_sc0000382.1_g000031 |
| rosa_roxburghii | Rroxscaffold_1G00044670 |
| rosa_rugosa | Rorug05G0152600 Rorug05G0152600 Rorug05G0152600 |
| rosa_samantha | Rh5AG246800 Rh5BG247100 Rh5CG278200 Rh5DG255700 |
| rosa_wichuraiana | Rw5G022650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1964 |
| Acc16I | TGCGCA | 1 cut(s) | 1349 |
| Acc65I | GGTACC | 1 cut(s) | 1474 |
| AccB1I | GGYRCC | 2 cut(s) | 758, 1474 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 229, 1492 |
| AccI | GTMKAC | 1 cut(s) | 1001 |
| AccII | CGCG | 3 cut(s) | 34, 238, 1527 |
| AciI | CCGC | 5 cut(s) | 180, 196, 236, 806, 1078 |
| AclWI | GGATC | 4 cut(s) | 244, 257, 649, 1571 |
| AcoI | YGGCCR | 1 cut(s) | 193 |
| AcsI | RAATTY | 1 cut(s) | 158 |
| AcuI | CTGAAG | 2 cut(s) | 461, 1663 |
| AcvI | CACGTG | 1 cut(s) | 418 |
| AdeI | CACNNNGTG | 1 cut(s) | 177 |
| AfaI | GTAC | 6 cut(s) | 458, 833, 1476, 1829, 1868, 1928 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 229, 768, 1047, 1420, 1432, 1456, 1492 |
| AflIII | ACRYGT | 3 cut(s) | 408, 417, 426 |
| AgsI | TTSAA | 8 cut(s) | 547, 686, 1058, 1177, 1260, 1282, 1586, 1619 |
| AjiI | CACGTC | 1 cut(s) | 409 |
| AjnI | CCWGG | 5 cut(s) | 222, 228, 252, 1669, 1876 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 193, 225 |
| AleI | CACNNNNGTG | 1 cut(s) | 1835 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1566, 1598 |
| AluBI | AGCT | 7 cut(s) | 72, 439, 890, 951, 1149, 1693, 2030 |
| AluI | AGCT | 7 cut(s) | 72, 439, 890, 951, 1149, 1693, 2030 |
| Alw21I | GWGCWC | 2 cut(s) | 393, 1695 |
| Alw26I | GTCTC | 5 cut(s) | 219, 951, 1539, 1712, 2011 |
| AlwI | GGATC | 4 cut(s) | 244, 257, 649, 1571 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 229 |
| Ama87I | CYCGRG | 1 cut(s) | 1418 |
| AoxI | GGCC | 8 cut(s) | 193, 220, 807, 1111, 1423, 1666, 1715, 1967 |
| ApeKI | GCWGC | 9 cut(s) | 433, 436, 505, 815, 887, 1373, 1623, 1656, 1895 |
| ApoI | RAATTY | 1 cut(s) | 158 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 353, 385 |
| Asp718I | GGTACC | 1 cut(s) | 1474 |
| AspLEI | GCGC | 4 cut(s) | 36, 287, 726, 1350 |
| AspS9I | GGNCC | 8 cut(s) | 220, 226, 232, 808, 1111, 1423, 1667, 1716 |
| AsuC2I | CCSGG | 2 cut(s) | 266, 292 |
| AsuHPI | GGTGA | 6 cut(s) | 394, 497, 658, 667, 1439, 1866 |
| AvaI | CYCGRG | 1 cut(s) | 1418 |
| AvaII | GGWCC | 2 cut(s) | 226, 232 |
| BamHI | GGATCC | 1 cut(s) | 249 |
| BanI | GGYRCC | 2 cut(s) | 758, 1474 |
| BanII | GRGCYC | 2 cut(s) | 297, 1695 |
| BbrPI | CACGTG | 1 cut(s) | 418 |
| BbsI | GAAGAC | 6 cut(s) | 114, 126, 208, 449, 1165, 1981 |
| Bbv12I | GWGCWC | 2 cut(s) | 393, 1695 |
| BbvI | GCAGC | 9 cut(s) | 420, 448, 492, 802, 899, 1385, 1635, 1643, 1882 |
| BccI | CCATC | 4 cut(s) | 466, 1362, 1634, 1747 |
| BceAI | ACGGC | 3 cut(s) | 379, 462, 483 |
| BciT130I | CCWGG | 5 cut(s) | 224, 230, 254, 1671, 1878 |
| BclI | TGATCA | 2 cut(s) | 1404, 2056 |
| BcnI | CCSGG | 2 cut(s) | 266, 292 |
| BcoDI | GTCTC | 5 cut(s) | 219, 951, 1539, 1712, 2011 |
| BfmI | CTRYAG | 3 cut(s) | 6, 434, 816 |
| Bme1390I | CCNGG | 7 cut(s) | 224, 230, 254, 266, 292, 1671, 1878 |
| Bme18I | GGWCC | 2 cut(s) | 226, 232 |
| BmeT110I | CYCGRG | 1 cut(s) | 1418 |
| BmgBI | CACGTC | 1 cut(s) | 409 |
| BmgT120I | GGNCC | 8 cut(s) | 220, 226, 232, 808, 1111, 1423, 1667, 1716 |
| BmiI | GGNNCC | 8 cut(s) | 234, 251, 263, 760, 1039, 1112, 1412, 1476 |
| BmrFI | CCNGG | 7 cut(s) | 224, 230, 254, 266, 292, 1671, 1878 |
| BmrI | ACTGGG | 1 cut(s) | 2009 |
| BmsI | GCATC | 2 cut(s) | 1621, 1942 |
| BmuI | ACTGGG | 1 cut(s) | 2009 |
| BoxI | GACNNNNGTC | 2 cut(s) | 516, 1981 |
| BpiI | GAAGAC | 6 cut(s) | 114, 126, 208, 449, 1165, 1981 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 199, 231 |
| BpuEI | CTTGAG | 3 cut(s) | 973, 1529, 1808 |
| BpuMI | CCSGG | 2 cut(s) | 266, 292 |
| BsaAI | YACGTR | 3 cut(s) | 418, 1005, 1810 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1993 |
| BsaI | GGTCTC | 1 cut(s) | 219 |
| BsaJI | CCNNGG | 4 cut(s) | 651, 1419, 1669, 1770 |
| BsaWI | WCCGGW | 1 cut(s) | 393 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1566, 1596 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 229, 768, 1047, 1420, 1432, 1456, 1492 |
| Bse1I | ACTGG | 4 cut(s) | 516, 1194, 1580, 2004 |
| Bse3DI | GCAATG | 2 cut(s) | 881, 1278 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1993 |
| BseBI | CCWGG | 5 cut(s) | 224, 230, 254, 1671, 1878 |
| BseDI | CCNNGG | 4 cut(s) | 651, 1419, 1669, 1770 |
| BseGI | GGATG | 4 cut(s) | 142, 1311, 1501, 1804 |
| BseJI | GATNNNNATC | 1 cut(s) | 1993 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 229, 768, 1047, 1420, 1432, 1456, 1492 |
| BseMI | GCAATG | 2 cut(s) | 881, 1278 |
| BseMII | CTCAG | 5 cut(s) | 66, 1138, 1648, 1723, 2006 |
| BseNI | ACTGG | 4 cut(s) | 516, 1194, 1580, 2004 |
| BseRI | GAGGAG | 1 cut(s) | 1936 |
| BseXI | GCAGC | 9 cut(s) | 420, 448, 492, 802, 899, 1385, 1635, 1643, 1882 |
| Bsh1236I | CGCG | 3 cut(s) | 34, 238, 1527 |
| BshFI | GGCC | 8 cut(s) | 195, 222, 809, 1113, 1425, 1668, 1717, 1969 |
| BshNI | GGYRCC | 2 cut(s) | 758, 1474 |
| BsiHKAI | GWGCWC | 2 cut(s) | 393, 1695 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1418 |
| BsiSI | CCGG | 3 cut(s) | 265, 291, 394 |
| BslFI | GGGAC | 1 cut(s) | 505 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 229, 768, 1047, 1420, 1432, 1456, 1492 |
| BsmAI | GTCTC | 5 cut(s) | 219, 951, 1539, 1712, 2011 |
| BsmFI | GGGAC | 1 cut(s) | 505 |
| BsmI | GAATGC | 3 cut(s) | 735, 1596, 1778 |
| BsnI | GGCC | 8 cut(s) | 195, 222, 809, 1113, 1425, 1668, 1717, 1969 |
| Bso31I | GGTCTC | 1 cut(s) | 219 |
| BsoBI | CYCGRG | 1 cut(s) | 1418 |
| Bsp1286I | GDGCHC | 3 cut(s) | 297, 393, 1695 |
| Bsp143I | GATC | 7 cut(s) | 249, 641, 1404, 1498, 1522, 1576, 2056 |
| BspACI | CCGC | 5 cut(s) | 180, 196, 236, 806, 1078 |
| BspANI | GGCC | 8 cut(s) | 195, 222, 809, 1113, 1425, 1668, 1717, 1969 |
| BspCNI | CTCAG | 5 cut(s) | 67, 1137, 1647, 1722, 2007 |
| BspFNI | CGCG | 3 cut(s) | 34, 238, 1527 |
| BspLI | GGNNCC | 8 cut(s) | 234, 251, 263, 760, 1039, 1112, 1412, 1476 |
| BspMAI | CTGCAG | 2 cut(s) | 438, 820 |
| BspPI | GGATC | 4 cut(s) | 244, 257, 649, 1571 |
| BspT107I | GGYRCC | 2 cut(s) | 758, 1474 |
| BspTNI | GGTCTC | 1 cut(s) | 219 |
| BsrDI | GCAATG | 2 cut(s) | 881, 1278 |
| BsrI | ACTGG | 4 cut(s) | 516, 1194, 1580, 2004 |
| BssECI | CCNNGG | 4 cut(s) | 651, 1419, 1669, 1770 |
| BssMI | GATC | 7 cut(s) | 249, 641, 1404, 1498, 1522, 1576, 2056 |
| Bst2UI | CCWGG | 5 cut(s) | 224, 230, 254, 1671, 1878 |
| Bst4CI | ACNGT | 7 cut(s) | 143, 382, 388, 652, 664, 763, 1054 |
| Bst6I | CTCTTC | 3 cut(s) | 78, 446, 1307 |
| BstBAI | YACGTR | 3 cut(s) | 418, 1005, 1810 |
| BstC8I | GCNNGC | 5 cut(s) | 38, 178, 240, 993, 1248 |
| BstDEI | CTNAG | 6 cut(s) | 75, 1124, 1427, 1634, 1709, 2015 |
| BstDSI | CCRYGG | 2 cut(s) | 651, 1770 |
| BstEII | GGTNACC | 1 cut(s) | 646 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1418 |
| BstF5I | GGATG | 4 cut(s) | 142, 1311, 1501, 1804 |
| BstFNI | CGCG | 3 cut(s) | 34, 238, 1527 |
| BstHHI | GCGC | 4 cut(s) | 36, 287, 726, 1350 |
| BstKTI | GATC | 7 cut(s) | 252, 644, 1407, 1501, 1525, 1579, 2059 |
| BstMAI | GTCTC | 5 cut(s) | 219, 951, 1539, 1712, 2011 |
| BstMBI | GATC | 7 cut(s) | 249, 641, 1404, 1498, 1522, 1576, 2056 |
| BstNI | CCWGG | 5 cut(s) | 224, 230, 254, 1671, 1878 |
| BstNSI | RCATGY | 6 cut(s) | 40, 169, 430, 828, 1250, 1663 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 516, 1981 |
| BstPI | GGTNACC | 1 cut(s) | 646 |
| BstSCI | CCNGG | 7 cut(s) | 222, 228, 252, 264, 290, 1669, 1876 |
| BstSFI | CTRYAG | 3 cut(s) | 6, 434, 816 |
| BstUI | CGCG | 3 cut(s) | 34, 238, 1527 |
| BstV1I | GCAGC | 9 cut(s) | 420, 448, 492, 802, 899, 1385, 1635, 1643, 1882 |
| BstV2I | GAAGAC | 6 cut(s) | 114, 126, 208, 449, 1165, 1981 |
| BstX2I | RGATCY | 2 cut(s) | 249, 1576 |
| BstYI | RGATCY | 2 cut(s) | 249, 1576 |
| BsuRI | GGCC | 8 cut(s) | 195, 222, 809, 1113, 1425, 1668, 1717, 1969 |
| BtgI | CCRYGG | 2 cut(s) | 651, 1770 |
| BtgZI | GCGATG | 3 cut(s) | 485, 548, 1919 |
| BtrI | CACGTC | 1 cut(s) | 409 |
| BtsCI | GGATG | 4 cut(s) | 142, 1311, 1501, 1804 |
| BtsI | GCAGTG | 1 cut(s) | 171 |
| BtsIMutI | CAGTG | 6 cut(s) | 148, 171, 669, 1201, 1687, 1997 |
| Cac8I | GCNNGC | 5 cut(s) | 38, 178, 240, 993, 1248 |
| CaiI | CAGNNNCTG | 1 cut(s) | 229 |
| CfoI | GCGC | 4 cut(s) | 36, 287, 726, 1350 |
| Cfr13I | GGNCC | 8 cut(s) | 220, 226, 232, 808, 1111, 1423, 1667, 1716 |
| CseI | GACGC | 3 cut(s) | 131, 1349, 1516 |
| CsiI | ACCWGGT | 1 cut(s) | 1876 |
| Csp6I | GTAC | 6 cut(s) | 457, 832, 1475, 1828, 1867, 1927 |
| CviQI | GTAC | 6 cut(s) | 457, 832, 1475, 1828, 1867, 1927 |
| DdeI | CTNAG | 6 cut(s) | 75, 1124, 1427, 1634, 1709, 2015 |
| DpnI | GATC | 7 cut(s) | 251, 643, 1406, 1500, 1524, 1578, 2058 |
| DpnII | GATC | 7 cut(s) | 249, 641, 1404, 1498, 1522, 1576, 2056 |
| DraIII | CACNNNGTG | 1 cut(s) | 177 |
| EaeI | YGGCCR | 1 cut(s) | 193 |
| Eam1104I | CTCTTC | 3 cut(s) | 78, 446, 1307 |
| EarI | CTCTTC | 3 cut(s) | 78, 446, 1307 |
| Ecl136II | GAGCTC | 1 cut(s) | 1693 |
| Eco147I | AGGCCT | 1 cut(s) | 1969 |
| Eco24I | GRGCYC | 2 cut(s) | 297, 1695 |
| Eco31I | GGTCTC | 1 cut(s) | 219 |
| Eco32I | GATATC | 1 cut(s) | 1438 |
| Eco47I | GGWCC | 2 cut(s) | 226, 232 |
| Eco53kI | GAGCTC | 1 cut(s) | 1693 |
| Eco57I | CTGAAG | 2 cut(s) | 461, 1663 |
| Eco72I | CACGTG | 1 cut(s) | 418 |
| Eco88I | CYCGRG | 1 cut(s) | 1418 |
| Eco91I | GGTNACC | 1 cut(s) | 646 |
| EcoICRI | GAGCTC | 1 cut(s) | 1693 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1418 |
| EcoO109I | RGGNCCY | 5 cut(s) | 226, 1111, 1423, 1667, 1716 |
| EcoO65I | GGTNACC | 1 cut(s) | 646 |
| EcoRII | CCWGG | 5 cut(s) | 222, 228, 252, 1669, 1876 |
| EcoRV | GATATC | 1 cut(s) | 1438 |
| EcoT38I | GRGCYC | 2 cut(s) | 297, 1695 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1304, 1336, 1922, 1954 |
| FaqI | GGGAC | 1 cut(s) | 505 |
| FauI | CCCGC | 1 cut(s) | 243 |
| FbaI | TGATCA | 2 cut(s) | 1404, 2056 |
| FblI | GTMKAC | 1 cut(s) | 1001 |
| FokI | GGATG | 4 cut(s) | 149, 1318, 1508, 1811 |
| FriOI | GRGCYC | 2 cut(s) | 297, 1695 |
| FspI | TGCGCA | 1 cut(s) | 1349 |
| GlaI | GCGC | 4 cut(s) | 35, 286, 725, 1349 |
| HaeIII | GGCC | 8 cut(s) | 195, 222, 809, 1113, 1425, 1668, 1717, 1969 |
| HapII | CCGG | 3 cut(s) | 265, 291, 394 |
| HgaI | GACGC | 3 cut(s) | 131, 1349, 1516 |
| HhaI | GCGC | 4 cut(s) | 36, 287, 726, 1350 |
| Hin6I | GCGC | 4 cut(s) | 34, 285, 724, 1348 |
| HinP1I | GCGC | 4 cut(s) | 34, 285, 724, 1348 |
| HincII | GTYRAC | 2 cut(s) | 1364, 2037 |
| HindII | GTYRAC | 2 cut(s) | 1364, 2037 |
| HinfI | GANTC | 7 cut(s) | 619, 843, 1015, 1120, 1200, 1813, 2019 |
| HpaII | CCGG | 3 cut(s) | 265, 291, 394 |
| HphI | GGTGA | 6 cut(s) | 394, 497, 658, 667, 1439, 1866 |
| Hpy166II | GTNNAC | 7 cut(s) | 171, 361, 1002, 1199, 1364, 1830, 2037 |
| Hpy188I | TCNGA | 5 cut(s) | 76, 1337, 1469, 1637, 1712 |
| Hpy8I | GTNNAC | 7 cut(s) | 171, 361, 1002, 1199, 1364, 1830, 2037 |
| Hpy99I | CGWCG | 5 cut(s) | 34, 65, 116, 119, 1691 |
| HpyAV | CCTTC | 9 cut(s) | 472, 482, 541, 550, 631, 1424, 1425, 1707, 1729 |
| HpyCH4III | ACNGT | 7 cut(s) | 143, 382, 388, 652, 664, 763, 1054 |
| HpyCH4IV | ACGT | 4 cut(s) | 408, 417, 1004, 1809 |
| HpyF3I | CTNAG | 6 cut(s) | 75, 1124, 1427, 1634, 1709, 2015 |
| HpySE526I | ACGT | 4 cut(s) | 408, 417, 1004, 1809 |
| HspAI | GCGC | 4 cut(s) | 34, 285, 724, 1348 |
| KpnI | GGTACC | 1 cut(s) | 1478 |
| Ksp22I | TGATCA | 2 cut(s) | 1404, 2056 |
| Kzo9I | GATC | 7 cut(s) | 249, 641, 1404, 1498, 1522, 1576, 2056 |
| LmnI | GCTCC | 3 cut(s) | 396, 821, 1037 |
| Lsp1109I | GCAGC | 9 cut(s) | 420, 448, 492, 802, 899, 1385, 1635, 1643, 1882 |
| LweI | GCATC | 2 cut(s) | 1621, 1942 |
| MabI | ACCWGGT | 1 cut(s) | 1876 |
| MaeII | ACGT | 4 cut(s) | 408, 417, 1004, 1809 |
| MaeIII | GTNAC | 5 cut(s) | 382, 509, 646, 1210, 1810 |
| MalI | GATC | 7 cut(s) | 251, 643, 1406, 1500, 1524, 1578, 2058 |
| MboI | GATC | 7 cut(s) | 249, 641, 1404, 1498, 1522, 1576, 2056 |
| MfeI | CAATTG | 1 cut(s) | 1277 |
| MflI | RGATCY | 2 cut(s) | 249, 1576 |
| MhlI | GDGCHC | 3 cut(s) | 297, 393, 1695 |
| MluCI | AATT | 7 cut(s) | 158, 330, 1182, 1277, 1560, 1755, 1905 |
| MlyI | GAGTC | 5 cut(s) | 1024, 1114, 1194, 1807, 2013 |
| MmeI | TCCRAC | 1 cut(s) | 1862 |
| MseI | TTAA | 2 cut(s) | 1190, 1940 |
| MslI | CAYNNNNRTG | 3 cut(s) | 470, 1235, 1835 |
| MspA1I | CMGCKG | 2 cut(s) | 439, 890 |
| MspI | CCGG | 3 cut(s) | 265, 291, 394 |
| MspR9I | CCNGG | 7 cut(s) | 224, 230, 254, 266, 292, 1671, 1878 |
| MunI | CAATTG | 1 cut(s) | 1277 |
| Mva1269I | GAATGC | 3 cut(s) | 735, 1596, 1778 |
| MvaI | CCWGG | 5 cut(s) | 224, 230, 254, 1671, 1878 |
| MvnI | CGCG | 3 cut(s) | 34, 238, 1527 |
| NciI | CCSGG | 2 cut(s) | 266, 292 |
| NdeII | GATC | 7 cut(s) | 249, 641, 1404, 1498, 1522, 1576, 2056 |
| NlaIV | GGNNCC | 8 cut(s) | 234, 251, 263, 760, 1039, 1112, 1412, 1476 |
| NmuCI | GTSAC | 5 cut(s) | 382, 509, 646, 1210, 1810 |
| NsbI | TGCGCA | 1 cut(s) | 1349 |
| NspI | RCATGY | 6 cut(s) | 40, 169, 430, 828, 1250, 1663 |
| OliI | CACNNNNGTG | 1 cut(s) | 1835 |
| PaeI | GCATGC | 2 cut(s) | 40, 1250 |
| PceI | AGGCCT | 1 cut(s) | 1969 |
| PciI | ACATGT | 1 cut(s) | 426 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 111, 414 |
| PctI | GAATGC | 3 cut(s) | 735, 1596, 1778 |
| PfeI | GAWTC | 2 cut(s) | 619, 843 |
| PflFI | GACNNNGTC | 1 cut(s) | 1463 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 229, 1492 |
| PfoI | TCCNGGA | 2 cut(s) | 228, 252 |
| PleI | GAGTC | 5 cut(s) | 1023, 1114, 1194, 1807, 2013 |
| PmaCI | CACGTG | 1 cut(s) | 418 |
| PmlI | CACGTG | 1 cut(s) | 418 |
| PpsI | GAGTC | 5 cut(s) | 1023, 1114, 1194, 1807, 2013 |
| Ppu21I | YACGTR | 3 cut(s) | 418, 1005, 1810 |
| PpuMI | RGGWCCY | 1 cut(s) | 226 |
| PscI | ACATGT | 1 cut(s) | 426 |
| PshAI | GACNNNNGTC | 2 cut(s) | 516, 1981 |
| PsiI | TTATAA | 1 cut(s) | 1964 |
| Psp124BI | GAGCTC | 1 cut(s) | 1695 |
| Psp5II | RGGWCCY | 1 cut(s) | 226 |
| Psp6I | CCWGG | 5 cut(s) | 222, 228, 252, 1669, 1876 |
| PspCI | CACGTG | 1 cut(s) | 418 |
| PspEI | GGTNACC | 1 cut(s) | 646 |
| PspGI | CCWGG | 5 cut(s) | 222, 228, 252, 1669, 1876 |
| PspN4I | GGNNCC | 8 cut(s) | 234, 251, 263, 760, 1039, 1112, 1412, 1476 |
| PspPI | GGNCC | 8 cut(s) | 220, 226, 232, 808, 1111, 1423, 1667, 1716 |
| PspPPI | RGGWCCY | 1 cut(s) | 226 |
| PstI | CTGCAG | 2 cut(s) | 438, 820 |
| PstNI | CAGNNNCTG | 1 cut(s) | 229 |
| PsuI | RGATCY | 2 cut(s) | 249, 1576 |
| PsyI | GACNNNGTC | 1 cut(s) | 1463 |
| PvuII | CAGCTG | 2 cut(s) | 439, 890 |
| RsaI | GTAC | 6 cut(s) | 458, 833, 1476, 1829, 1868, 1928 |
| RsaNI | GTAC | 6 cut(s) | 457, 832, 1475, 1828, 1867, 1927 |
| RseI | CAYNNNNRTG | 3 cut(s) | 470, 1235, 1835 |
| SacI | GAGCTC | 1 cut(s) | 1695 |
| SaqAI | TTAA | 2 cut(s) | 1190, 1940 |
| Sau3AI | GATC | 7 cut(s) | 249, 641, 1404, 1498, 1522, 1576, 2056 |
| Sau96I | GGNCC | 8 cut(s) | 220, 226, 232, 808, 1111, 1423, 1667, 1716 |
| SchI | GAGTC | 5 cut(s) | 1024, 1114, 1194, 1807, 2013 |
| ScrFI | CCNGG | 7 cut(s) | 224, 230, 254, 266, 292, 1671, 1878 |
| SduI | GDGCHC | 3 cut(s) | 297, 393, 1695 |
| SexAI | ACCWGGT | 1 cut(s) | 1876 |
| SfaNI | GCATC | 2 cut(s) | 1621, 1942 |
| SfcI | CTRYAG | 3 cut(s) | 6, 434, 816 |
| SinI | GGWCC | 2 cut(s) | 226, 232 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 470, 1235, 1835 |
| SmlI | CTYRAG | 3 cut(s) | 952, 1508, 1787 |
| SmoI | CTYRAG | 3 cut(s) | 952, 1508, 1787 |
| SphI | GCATGC | 2 cut(s) | 40, 1250 |
| Sse9I | AATT | 7 cut(s) | 158, 330, 1182, 1277, 1560, 1755, 1905 |
| SseBI | AGGCCT | 1 cut(s) | 1969 |
| SsiI | CCGC | 5 cut(s) | 180, 196, 236, 806, 1078 |
| SspI | AATATT | 1 cut(s) | 909 |
| SstI | GAGCTC | 1 cut(s) | 1695 |
| StuI | AGGCCT | 1 cut(s) | 1969 |
| StyD4I | CCNGG | 7 cut(s) | 222, 228, 252, 264, 290, 1669, 1876 |
| TaaI | ACNGT | 7 cut(s) | 143, 382, 388, 652, 664, 763, 1054 |
| TaiI | ACGT | 4 cut(s) | 411, 420, 1007, 1812 |
| TaqI | TCGA | 5 cut(s) | 1389, 1748, 1764, 1972, 1985 |
| TaqII | GACCGA | 1 cut(s) | 220 |
| TasI | AATT | 7 cut(s) | 158, 330, 1182, 1277, 1560, 1755, 1905 |
| TauI | GCSGC | 3 cut(s) | 198, 809, 1080 |
| TfiI | GAWTC | 2 cut(s) | 619, 843 |
| Tru1I | TTAA | 2 cut(s) | 1190, 1940 |
| Tru9I | TTAA | 2 cut(s) | 1190, 1940 |
| TscAI | CASTG | 6 cut(s) | 148, 178, 669, 1201, 1687, 2004 |
| TseFI | GTSAC | 5 cut(s) | 382, 509, 646, 1210, 1810 |
| TseI | GCWGC | 9 cut(s) | 433, 436, 505, 815, 887, 1373, 1623, 1656, 1895 |
| Tsp45I | GTSAC | 5 cut(s) | 382, 509, 646, 1210, 1810 |
| TspDTI | ATGAA | 6 cut(s) | 670, 1407, 1711, 1857, 1941, 1983 |
| TspGWI | ACGGA | 3 cut(s) | 419, 1169, 1787 |
| TspRI | CASTG | 6 cut(s) | 148, 178, 669, 1201, 1687, 2004 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1463 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 229, 1492 |
| VpaK11BI | GGWCC | 2 cut(s) | 226, 232 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1418 |
| XapI | RAATTY | 1 cut(s) | 158 |
| XceI | RCATGY | 6 cut(s) | 40, 169, 430, 828, 1250, 1663 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1031 |
| XmiI | GTMKAC | 1 cut(s) | 1001 |