Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007370

Physical Location & Seq

Genomic Coordinates Forward (+)

30211545 .. 30214166

Gene Structure 2622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTTGATAGGAAACATAAAGGTGTTTTTGCATGCAACCACTTCAAAGAAACAAGCAATGCAATTGAAGATGAGAAACATAGAGTGGTGGATGAGGAAGAGGCACTTGCCTATGGAGTTCAGACAACGGGTGCGCAACTACGAGCGTCAACGATGGGCAGCCATGCGTGGTGTCGATGAATGTGAGATGATCAGGAACCTTCCCGAGGGCCTTAGAAGGGATATCAAGTATCACCTATGCTTGGACTTGGTCAGACAGGTACCATTATTCCAATATATGGATGATCTGGTTCTTGAGAACATTTGTGATCGGGTCAAGTCTCTTATATTCCCAAAAGGAGAAACAATTACAAGGGAGGGAGACCCAGTTCAAAGAATGCTATTTGTAGTAAGGGGGCATCTTCAAAGCAGCCAAGTTCTCAGAGATGGTGTGAAAAGTTGCTGCATGTTAGGCCCTGGAAACTTCAGTGGCGACGAGCTCTTGTCATGGTGTCTCAGAAGGCCCTTCATAGAAAGACTACCACCATCTTCCTCGACACTAATTACTCTCGAAACCACGGAAGCATTCAGCCTTGAAGCAGAGGATGTTAAATACGTGACTCAACATTTTCGGTACACATTTGTGAATGAAAAGGTCAAGAGAAGTGCAAGGTACTACTCACCAGGTTGGAGGACATGGGCTGCTGTGGCAATTCAGTTGGCTTGGAGGAGGTACAAGCATCGCTTAACGCTAACTTCATTGTCGTTTATAAGGCCTCGAAGACCCCTGTCGAGATGTTCATCACTGGGAGAGGACAGGTTGAGACTCTACACAGCTTTGTTGACTTCTCCAAAGCCAAATGATCAAGATGATTTTTTGATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0008324 GO:0009626 GO:0009987 GO:0012501 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0033554 GO:0034050 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

288

Amino Acids

34.07

Weight (kDa)

9.79

Isoelectric Point (pI)

57.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	110 - 199	1.3e-08	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54250 AT5G54250 AT5G54250 AT5G54250
fragaria_vesca	FvH4_3g21060
malus_domestica	MD03G1218000.v1.1 MD11G1235800.v1.1
prunus_persica	Prupe.4G191200_v2.0.a1
pyrus_communis	pycom03g16750 pycom1049g00060 pycom1049g00070 pycom11g20730
rosa_chinensis	RchiOBHm_Chr5g0036081 RchiOBHm_Chr5g0036091
rosa_laevigata	RLG00000033664
rosa_multiflora	Rmu_sc0000382.1_g000031
rosa_roxburghii	Rroxscaffold_1G00044670
rosa_rugosa	Rorug05G0152600 Rorug05G0152600 Rorug05G0152600
rosa_samantha	Rh5AG246800 Rh5BG247100 Rh5CG278200 Rh5DG255700
rosa_wichuraiana	Rw5G022650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	749
Acc16I	TGCGCA	1 cut(s)	134
Acc65I	GGTACC	1 cut(s)	259
AccB1I	GGYRCC	1 cut(s)	259
AccB7I	CCANNNNNTGG	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	448
AfaI	GTAC	4 cut(s)	261, 614, 653, 713
AfiI	CCNNNNNNNGG	4 cut(s)	205, 217, 241, 277
AgsI	TTSAA	5 cut(s)	45, 67, 371, 404, 575
AjnI	CCWGG	2 cut(s)	454, 661
AleI	CACNNNNGTG	1 cut(s)	620
AloI	GAACNNNNNNTCC	2 cut(s)	351, 383
AluBI	AGCT	2 cut(s)	478, 815
AluI	AGCT	2 cut(s)	478, 815
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	4 cut(s)	324, 354, 497, 796
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	4 cut(s)	208, 451, 500, 752
ApeKI	GCWGC	4 cut(s)	158, 408, 441, 680
Asp718I	GGTACC	1 cut(s)	259
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	3 cut(s)	208, 452, 501
AsuHPI	GGTGA	2 cut(s)	224, 651
AvaI	CYCGRG	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	480
BbsI	GAAGAC	1 cut(s)	766
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	4 cut(s)	170, 420, 428, 667
BccI	CCATC	3 cut(s)	147, 419, 532
BciT130I	CCWGG	2 cut(s)	456, 663
BclI	TGATCA	2 cut(s)	189, 841
BcoDI	GTCTC	4 cut(s)	324, 354, 497, 796
BisI	GCNGC	4 cut(s)	159, 409, 442, 681
BlsI	GCNGC	4 cut(s)	160, 410, 443, 682
Bme1390I	CCNGG	2 cut(s)	456, 663
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	3 cut(s)	208, 452, 501
BmiI	GGNNCC	2 cut(s)	197, 261
BmrFI	CCNGG	2 cut(s)	456, 663
BmrI	ACTGGG	2 cut(s)	359, 794
BmsI	GCATC	2 cut(s)	406, 727
BmuI	ACTGGG	2 cut(s)	359, 794
BoxI	GACNNNNGTC	1 cut(s)	766
BpiI	GAAGAC	1 cut(s)	766
BpuEI	CTTGAG	1 cut(s)	314
BsaAI	YACGTR	1 cut(s)	595
BsaBI	GATNNNNATC	1 cut(s)	778
BsaI	GGTCTC	1 cut(s)	354
BsaJI	CCNNGG	3 cut(s)	204, 454, 555
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	4 cut(s)	205, 217, 241, 277
Bse1I	ACTGG	2 cut(s)	365, 789
Bse3DI	GCAATG	1 cut(s)	63
Bse8I	GATNNNNATC	1 cut(s)	778
BseBI	CCWGG	2 cut(s)	456, 663
BseDI	CCNNGG	3 cut(s)	204, 454, 555
BseGI	GGATG	3 cut(s)	96, 286, 589
BseJI	GATNNNNATC	1 cut(s)	778
BseLI	CCNNNNNNNGG	4 cut(s)	205, 217, 241, 277
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	2 cut(s)	433, 508
BseNI	ACTGG	2 cut(s)	365, 789
BseRI	GAGGAG	1 cut(s)	721
BseXI	GCAGC	4 cut(s)	170, 420, 428, 667
BshFI	GGCC	4 cut(s)	210, 453, 502, 754
BshNI	GGYRCC	1 cut(s)	259
BsiHKAI	GWGCWC	1 cut(s)	480
BsiHKCI	CYCGRG	1 cut(s)	203
BslI	CCNNNNNNNGG	4 cut(s)	205, 217, 241, 277
BsmAI	GTCTC	4 cut(s)	324, 354, 497, 796
BsmI	GAATGC	2 cut(s)	381, 563
BsnI	GGCC	4 cut(s)	210, 453, 502, 754
Bso31I	GGTCTC	1 cut(s)	354
BsoBI	CYCGRG	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp143I	GATC	4 cut(s)	189, 283, 307, 841
BspANI	GGCC	4 cut(s)	210, 453, 502, 754
BspCNI	CTCAG	2 cut(s)	432, 507
BspLI	GGNNCC	2 cut(s)	197, 261
BspT107I	GGYRCC	1 cut(s)	259
BspTNI	GGTCTC	1 cut(s)	354
BsrDI	GCAATG	1 cut(s)	63
BsrI	ACTGG	2 cut(s)	365, 789
BssECI	CCNNGG	3 cut(s)	204, 454, 555
BssMI	GATC	4 cut(s)	189, 283, 307, 841
Bst2UI	CCWGG	2 cut(s)	456, 663
Bst6I	CTCTTC	1 cut(s)	92
BstBAI	YACGTR	1 cut(s)	595
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	3 cut(s)	212, 419, 494
BstDSI	CCRYGG	1 cut(s)	555
BstENI	CCTNNNNNAGG	1 cut(s)	203
BstF5I	GGATG	3 cut(s)	96, 286, 589
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	4 cut(s)	192, 286, 310, 844
BstMAI	GTCTC	4 cut(s)	324, 354, 497, 796
BstMBI	GATC	4 cut(s)	189, 283, 307, 841
BstMWI	GCNNNNNNNGC	2 cut(s)	450, 686
BstNI	CCWGG	2 cut(s)	456, 663
BstNSI	RCATGY	2 cut(s)	35, 448
BstPAI	GACNNNNGTC	1 cut(s)	766
BstSCI	CCNGG	2 cut(s)	454, 661
BstV1I	GCAGC	4 cut(s)	170, 420, 428, 667
BstV2I	GAAGAC	1 cut(s)	766
BsuRI	GGCC	4 cut(s)	210, 453, 502, 754
BtgI	CCRYGG	1 cut(s)	555
BtgZI	GCGATG	1 cut(s)	704
BtsCI	GGATG	3 cut(s)	96, 286, 589
BtsIMutI	CAGTG	2 cut(s)	472, 782
Cac8I	GCNNGC	1 cut(s)	33
CfoI	GCGC	1 cut(s)	135
Cfr13I	GGNCC	3 cut(s)	208, 452, 501
CseI	GACGC	1 cut(s)	134
CsiI	ACCWGGT	1 cut(s)	661
Csp6I	GTAC	4 cut(s)	260, 613, 652, 712
CviAII	CATG	5 cut(s)	32, 163, 445, 486, 675
CviQI	GTAC	4 cut(s)	260, 613, 652, 712
DdeI	CTNAG	3 cut(s)	212, 419, 494
DpnI	GATC	4 cut(s)	191, 285, 309, 843
DpnII	GATC	4 cut(s)	189, 283, 307, 841
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	478
Eco147I	AGGCCT	1 cut(s)	754
Eco24I	GRGCYC	1 cut(s)	480
Eco31I	GGTCTC	1 cut(s)	354
Eco32I	GATATC	1 cut(s)	223
Eco53kI	GAGCTC	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	448
Eco88I	CYCGRG	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	478
EcoNI	CCTNNNNNAGG	1 cut(s)	203
EcoO109I	RGGNCCY	3 cut(s)	208, 452, 501
EcoRII	CCWGG	2 cut(s)	454, 661
EcoRV	GATATC	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	480
FaeI	CATG	5 cut(s)	35, 166, 448, 489, 678
FalI	AAGNNNNNCTT	4 cut(s)	89, 121, 707, 739
FatI	CATG	5 cut(s)	31, 162, 444, 485, 674
FbaI	TGATCA	2 cut(s)	189, 841
Fnu4HI	GCNGC	4 cut(s)	159, 409, 442, 681
FokI	GGATG	3 cut(s)	103, 293, 596
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	4 cut(s)	159, 409, 442, 681
FspI	TGCGCA	1 cut(s)	134
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	4 cut(s)	159, 409, 442, 681
HaeIII	GGCC	4 cut(s)	210, 453, 502, 754
HgaI	GACGC	1 cut(s)	134
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	5 cut(s)	35, 166, 448, 489, 678
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HincII	GTYRAC	2 cut(s)	149, 822
HindII	GTYRAC	2 cut(s)	149, 822
HinfI	GANTC	2 cut(s)	598, 804
HphI	GGTGA	2 cut(s)	224, 651
Hpy166II	GTNNAC	3 cut(s)	149, 615, 822
Hpy188I	TCNGA	4 cut(s)	122, 254, 422, 497
Hpy188III	TCNNGA	7 cut(s)	193, 203, 293, 548, 637, 771, 845
Hpy8I	GTNNAC	3 cut(s)	149, 615, 822
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	4 cut(s)	209, 210, 492, 514
HpyCH4IV	ACGT	1 cut(s)	594
HpyCH4V	TGCA	5 cut(s)	31, 35, 61, 444, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	450, 686
HpyF3I	CTNAG	3 cut(s)	212, 419, 494
HpySE526I	ACGT	1 cut(s)	594
Hsp92II	CATG	5 cut(s)	35, 166, 448, 489, 678
HspAI	GCGC	1 cut(s)	133
KpnI	GGTACC	1 cut(s)	263
Ksp22I	TGATCA	2 cut(s)	189, 841
Kzo9I	GATC	4 cut(s)	189, 283, 307, 841
Lsp1109I	GCAGC	4 cut(s)	170, 420, 428, 667
LweI	GCATC	2 cut(s)	406, 727
MabI	ACCWGGT	1 cut(s)	661
MaeII	ACGT	1 cut(s)	594
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	4 cut(s)	191, 285, 309, 843
MboI	GATC	4 cut(s)	189, 283, 307, 841
MboII	GAAGA	5 cut(s)	79, 109, 392, 519, 771
MfeI	CAATTG	1 cut(s)	62
MhlI	GDGCHC	1 cut(s)	480
MluCI	AATT	4 cut(s)	62, 345, 540, 690
MlyI	GAGTC	2 cut(s)	592, 798
MmeI	TCCRAC	1 cut(s)	647
MseI	TTAA	2 cut(s)	588, 725
MslI	CAYNNNNRTG	2 cut(s)	20, 620
MspR9I	CCNGG	2 cut(s)	456, 663
MunI	CAATTG	1 cut(s)	62
Mva1269I	GAATGC	2 cut(s)	381, 563
MvaI	CCWGG	2 cut(s)	456, 663
MwoI	GCNNNNNNNGC	2 cut(s)	450, 686
NdeII	GATC	4 cut(s)	189, 283, 307, 841
NlaIII	CATG	5 cut(s)	35, 166, 448, 489, 678
NlaIV	GGNNCC	2 cut(s)	197, 261
NmuCI	GTSAC	1 cut(s)	595
NsbI	TGCGCA	1 cut(s)	134
NspI	RCATGY	2 cut(s)	35, 448
OliI	CACNNNNGTG	1 cut(s)	620
PaeI	GCATGC	1 cut(s)	35
PceI	AGGCCT	1 cut(s)	754
PctI	GAATGC	2 cut(s)	381, 563
PflFI	GACNNNGTC	1 cut(s)	248
PflMI	CCANNNNNTGG	1 cut(s)	277
PkrI	GCNGC	4 cut(s)	160, 410, 443, 682
PleI	GAGTC	2 cut(s)	592, 798
PpsI	GAGTC	2 cut(s)	592, 798
Ppu21I	YACGTR	1 cut(s)	595
PshAI	GACNNNNGTC	1 cut(s)	766
PsiI	TTATAA	1 cut(s)	749
Psp124BI	GAGCTC	1 cut(s)	480
Psp6I	CCWGG	2 cut(s)	454, 661
PspGI	CCWGG	2 cut(s)	454, 661
PspN4I	GGNNCC	2 cut(s)	197, 261
PspPI	GGNCC	3 cut(s)	208, 452, 501
PsyI	GACNNNGTC	1 cut(s)	248
RsaI	GTAC	4 cut(s)	261, 614, 653, 713
RsaNI	GTAC	4 cut(s)	260, 613, 652, 712
RseI	CAYNNNNRTG	2 cut(s)	20, 620
SacI	GAGCTC	1 cut(s)	480
SaqAI	TTAA	2 cut(s)	588, 725
SatI	GCNGC	4 cut(s)	159, 409, 442, 681
Sau3AI	GATC	4 cut(s)	189, 283, 307, 841
Sau96I	GGNCC	3 cut(s)	208, 452, 501
SchI	GAGTC	2 cut(s)	592, 798
ScrFI	CCNGG	2 cut(s)	456, 663
SduI	GDGCHC	1 cut(s)	480
SexAI	ACCWGGT	1 cut(s)	661
SfaNI	GCATC	2 cut(s)	406, 727
SmiMI	CAYNNNNRTG	2 cut(s)	20, 620
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SphI	GCATGC	1 cut(s)	35
Sse9I	AATT	4 cut(s)	62, 345, 540, 690
SseBI	AGGCCT	1 cut(s)	754
SstI	GAGCTC	1 cut(s)	480
StuI	AGGCCT	1 cut(s)	754
StyD4I	CCNGG	2 cut(s)	454, 661
TaiI	ACGT	1 cut(s)	597
TaqI	TCGA	5 cut(s)	174, 533, 549, 757, 770
TasI	AATT	4 cut(s)	62, 345, 540, 690
Tru1I	TTAA	2 cut(s)	588, 725
Tru9I	TTAA	2 cut(s)	588, 725
TscAI	CASTG	2 cut(s)	472, 789
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	4 cut(s)	158, 408, 441, 680
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	5 cut(s)	192, 496, 642, 726, 768
TspGWI	ACGGA	1 cut(s)	572
TspRI	CASTG	2 cut(s)	472, 789
Tth111I	GACNNNGTC	1 cut(s)	248
Van91I	CCANNNNNTGG	1 cut(s)	277
XagI	CCTNNNNNAGG	1 cut(s)	203
XceI	RCATGY	2 cut(s)	35, 448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.