Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00001049

Orthogroup ID

OG0007370

Physical Location & Seq

Genomic Coordinates Forward (+)

64173 .. 65116

Gene Structure 944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom1049g00070.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTTAATTTGCTTGAAAGAGCAATGCAGAGAAACAAGTGGTTGTGGCCTCAGAATATTAGCTTGCGAGGACTCTATTTACTATGGAGCGACAAACACTCTAAGAGAAGCAGCGAGACTAGCCTGGGCGGAGAACAGAAAAGCACGGTCGACGTGCTTAGACAGTGCCGATCATTACGATTATGGAGCTTATTCATGGACTGTTCAGCTGGTCACAAATGATAGCCGATTGGAGAAGATCCTTTTCCCCATCTTTTGGGGCCTAATGACTCTCAGATTTAATTATGTGCAGCACCTTTGGAAACTTGGAAAGCTCAACCGAGTGGTTAGAGGTTGTTTTCAACATCATTGTTCTAACCAGTGGGCTGCTTTTGGTCACCATGTTGATAGGAAACATAAAGGTAAAGAACTTTCCAAGAAACAAGCCATGCAACTGAAGATGAGAAACATAGAGTGGTGGATGAGGAAGAGGCAGTTGCCTCAGGGGTTTAGACAGCGGGTGCGAAACTACGAGCGTCAGAGATGGGCCGCCATGCGTGGCGTAGATGAATGTGAGATGATCAGAAATCTCCCTGAGGGCCTCAGGAGGGACATCAAATACCATCTTTGCTTGGACTTAGTGAGACAGGTACGTTTCTGTACCCACTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0008324 GO:0009626 GO:0009987 GO:0012501 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0033554 GO:0034050 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

217

Amino Acids

25.83

Weight (kDa)

9.68

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54250 AT5G54250 AT5G54250 AT5G54250
fragaria_vesca	FvH4_3g21060
malus_domestica	MD03G1218000.v1.1 MD11G1235800.v1.1
prunus_persica	Prupe.4G191200_v2.0.a1
pyrus_communis	pycom03g16750 pycom1049g00060 pycom1049g00070 pycom11g20730
rosa_chinensis	RchiOBHm_Chr5g0036081 RchiOBHm_Chr5g0036091
rosa_laevigata	RLG00000033664
rosa_multiflora	Rmu_sc0000382.1_g000031
rosa_roxburghii	Rroxscaffold_1G00044670
rosa_rugosa	Rorug05G0152600 Rorug05G0152600 Rorug05G0152600
rosa_samantha	Rh5AG246800 Rh5BG247100 Rh5CG278200 Rh5DG255700
rosa_wichuraiana	Rw5G022650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	255
AccI	GTMKAC	1 cut(s)	149
AciI	CCGC	3 cut(s)	128, 496, 528
AclWI	GGATC	1 cut(s)	232
AcuI	CTGAAG	1 cut(s)	455
AfaI	GTAC	2 cut(s)	630, 640
AfiI	CCNNNNNNNGG	2 cut(s)	255, 586
AgsI	TTSAA	2 cut(s)	16, 341
AjiI	CACGTC	1 cut(s)	153
AjnI	CCWGG	1 cut(s)	122
AluBI	AGCT	4 cut(s)	62, 188, 208, 313
AluI	AGCT	4 cut(s)	62, 188, 208, 313
Alw26I	GTCTC	2 cut(s)	109, 616
AlwI	GGATC	1 cut(s)	232
AoxI	GGCC	4 cut(s)	46, 259, 525, 577
ApeKI	GCWGC	3 cut(s)	110, 289, 365
AspS9I	GGNCC	3 cut(s)	259, 525, 577
AsuHPI	GGTGA	1 cut(s)	368
AxyI	CCTNAGG	3 cut(s)	480, 573, 581
BbvI	GCAGC	3 cut(s)	122, 301, 352
BccI	CCATC	3 cut(s)	257, 516, 609
BciT130I	CCWGG	1 cut(s)	124
BclI	TGATCA	1 cut(s)	558
BcoDI	GTCTC	2 cut(s)	109, 616
BfaI	CTAG	1 cut(s)	119
BisI	GCNGC	4 cut(s)	111, 290, 366, 528
BlsI	GCNGC	4 cut(s)	112, 291, 367, 529
Bme1390I	CCNGG	1 cut(s)	124
BmgBI	CACGTC	1 cut(s)	153
BmgT120I	GGNCC	3 cut(s)	259, 525, 577
BmiI	GGNNCC	1 cut(s)	260
BmrFI	CCNGG	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 586
Bse1I	ACTGG	1 cut(s)	358
Bse21I	CCTNAGG	3 cut(s)	480, 573, 581
Bse3DI	GCAATG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	124
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	465
BseLI	CCNNNNNNNGG	2 cut(s)	255, 586
BseMI	GCAATG	1 cut(s)	29
BseMII	CTCAG	5 cut(s)	64, 286, 494, 564, 595
BseNI	ACTGG	1 cut(s)	358
BseXI	GCAGC	3 cut(s)	122, 301, 352
BsgI	GTGCAG	1 cut(s)	308
Bsh1285I	CGRYCG	1 cut(s)	149
BshFI	GGCC	4 cut(s)	48, 261, 527, 579
BsiEI	CGRYCG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	2 cut(s)	255, 586
BsmAI	GTCTC	2 cut(s)	109, 616
BsmFI	GGGAC	1 cut(s)	602
BsnI	GGCC	4 cut(s)	48, 261, 527, 579
Bsp143I	GATC	3 cut(s)	169, 237, 558
BspACI	CCGC	3 cut(s)	128, 496, 528
BspANI	GGCC	4 cut(s)	48, 261, 527, 579
BspCNI	CTCAG	5 cut(s)	63, 285, 493, 565, 594
BspLI	GGNNCC	1 cut(s)	260
BspPI	GGATC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	3 cut(s)	169, 237, 558
Bst2UI	CCWGG	1 cut(s)	124
Bst4CI	ACNGT	3 cut(s)	147, 164, 202
Bst6I	CTCTTC	1 cut(s)	461
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	8 cut(s)	50, 101, 157, 272, 480, 573, 581, 616
BstEII	GGTNACC	1 cut(s)	374
BstF5I	GGATG	1 cut(s)	465
BstKTI	GATC	3 cut(s)	172, 240, 561
BstMAI	GTCTC	2 cut(s)	109, 616
BstMBI	GATC	3 cut(s)	169, 237, 558
BstMCI	CGRYCG	1 cut(s)	149
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	1 cut(s)	124
BstPI	GGTNACC	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	122
BstV1I	GCAGC	3 cut(s)	122, 301, 352
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
Bsu36I	CCTNAGG	3 cut(s)	480, 573, 581
BsuRI	GGCC	4 cut(s)	48, 261, 527, 579
BtrI	CACGTC	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	465
BtsI	GCAGTG	1 cut(s)	643
BtsIMutI	CAGTG	3 cut(s)	169, 365, 643
Cac8I	GCNNGC	1 cut(s)	64
Cfr13I	GGNCC	3 cut(s)	259, 525, 577
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	2 cut(s)	629, 639
CviAII	CATG	4 cut(s)	195, 380, 427, 532
CviQI	GTAC	2 cut(s)	629, 639
DdeI	CTNAG	8 cut(s)	50, 101, 157, 272, 480, 573, 581, 616
DpnI	GATC	3 cut(s)	171, 239, 560
DpnII	GATC	3 cut(s)	169, 237, 558
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
EciI	GGCGGA	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	455
Eco81I	CCTNAGG	3 cut(s)	480, 573, 581
Eco91I	GGTNACC	1 cut(s)	374
EcoO109I	RGGNCCY	2 cut(s)	259, 577
EcoO65I	GGTNACC	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	122
FaeI	CATG	4 cut(s)	198, 383, 430, 535
FaiI	YATR	9 cut(s)	84, 183, 196, 285, 381, 396, 428, 449, 533
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	4 cut(s)	194, 379, 426, 531
FauI	CCCGC	1 cut(s)	489
FbaI	TGATCA	1 cut(s)	558
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	4 cut(s)	111, 290, 366, 528
FokI	GGATG	1 cut(s)	472
Fsp4HI	GCNGC	4 cut(s)	111, 290, 366, 528
FspBI	CTAG	1 cut(s)	119
GluI	GCNGC	4 cut(s)	111, 290, 366, 528
HaeIII	GGCC	4 cut(s)	48, 261, 527, 579
HgaI	GACGC	1 cut(s)	503
Hin1II	CATG	4 cut(s)	198, 383, 430, 535
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HinfI	GANTC	2 cut(s)	71, 268
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	4 cut(s)	53, 275, 519, 563
Hpy188III	TCNNGA	1 cut(s)	583
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	1 cut(s)	154
HpyCH4III	ACNGT	3 cut(s)	147, 164, 202
HpyCH4IV	ACGT	2 cut(s)	152, 631
HpyCH4V	TGCA	3 cut(s)	27, 289, 430
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	8 cut(s)	50, 101, 157, 272, 480, 573, 581, 616
HpySE526I	ACGT	2 cut(s)	152, 631
Hsp92II	CATG	4 cut(s)	198, 383, 430, 535
Ksp22I	TGATCA	1 cut(s)	558
Kzo9I	GATC	3 cut(s)	169, 237, 558
LmnI	GCTCC	2 cut(s)	86, 185
LpnPI	CCDG	8 cut(s)	109, 136, 194, 371, 467, 568, 585, 611
Lsp1109I	GCAGC	3 cut(s)	122, 301, 352
MaeI	CTAG	1 cut(s)	119
MaeII	ACGT	2 cut(s)	152, 631
MaeIII	GTNAC	2 cut(s)	211, 374
MalI	GATC	3 cut(s)	171, 239, 560
MboI	GATC	3 cut(s)	169, 237, 558
MboII	GAAGA	3 cut(s)	247, 448, 478
MflI	RGATCY	1 cut(s)	237
MluCI	AATT	2 cut(s)	6, 280
MlyI	GAGTC	2 cut(s)	65, 262
MnlI	CCTC	9 cut(s)	59, 61, 323, 456, 462, 489, 568, 579, 590
MseI	TTAA	2 cut(s)	5, 279
MspA1I	CMGCKG	2 cut(s)	208, 496
MspR9I	CCNGG	1 cut(s)	124
MvaI	CCWGG	1 cut(s)	124
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	3 cut(s)	169, 237, 558
NlaIII	CATG	4 cut(s)	198, 383, 430, 535
NlaIV	GGNNCC	1 cut(s)	260
NmuCI	GTSAC	2 cut(s)	211, 374
PflMI	CCANNNNNTGG	1 cut(s)	255
PkrI	GCNGC	4 cut(s)	112, 291, 367, 529
PleI	GAGTC	2 cut(s)	65, 262
PpsI	GAGTC	2 cut(s)	65, 262
Psp6I	CCWGG	1 cut(s)	122
PspEI	GGTNACC	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	260
PspPI	GGNCC	3 cut(s)	259, 525, 577
PsuI	RGATCY	1 cut(s)	237
PvuII	CAGCTG	1 cut(s)	208
RsaI	GTAC	2 cut(s)	630, 640
RsaNI	GTAC	2 cut(s)	629, 639
SalI	GTCGAC	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	5, 279
SatI	GCNGC	4 cut(s)	111, 290, 366, 528
Sau3AI	GATC	3 cut(s)	169, 237, 558
Sau96I	GGNCC	3 cut(s)	259, 525, 577
SchI	GAGTC	2 cut(s)	65, 262
ScrFI	CCNGG	1 cut(s)	124
Sse9I	AATT	2 cut(s)	6, 280
SsiI	CCGC	3 cut(s)	128, 496, 528
SspI	AATATT	1 cut(s)	57
SspMI	CTAG	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	122
TaaI	ACNGT	3 cut(s)	147, 164, 202
TaiI	ACGT	2 cut(s)	155, 634
TaqI	TCGA	1 cut(s)	149
TasI	AATT	2 cut(s)	6, 280
TauI	GCSGC	1 cut(s)	530
Tru1I	TTAA	2 cut(s)	5, 279
Tru9I	TTAA	2 cut(s)	5, 279
TscAI	CASTG	3 cut(s)	169, 365, 650
TseFI	GTSAC	2 cut(s)	211, 374
TseI	GCWGC	3 cut(s)	110, 289, 365
Tsp45I	GTSAC	2 cut(s)	211, 374
TspDTI	ATGAA	2 cut(s)	183, 561
TspRI	CASTG	3 cut(s)	169, 365, 650
Van91I	CCANNNNNTGG	1 cut(s)	255
XmiI	GTMKAC	1 cut(s)	149
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.