Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00001049

Orthogroup ID

OG0007370

Physical Location & Seq

Genomic Coordinates Forward (+)

58379 .. 58988

Gene Structure 610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom1049g00060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCCTAGTGAGCAAGAAATTTCTCAGACTTCTTCACGCATGCATAACTACATCTCCGACGATGAATCTGAAACTGAAGATCACGAAGATCACGAGGTACAAGAAGACGACGAAGAGAGTGATGGAAGTAGTACATCTCATGGAGGAAATTTGAGAACTGCTTGTACAACAACATGTGTTCATCGCGGCAGAGGAGGAGGCCCGGTTGGTCACTCGGCCAAGTTCTCGACCCGAGAGCGAAATGGGTTCAAGAATGGAACAGGGTTTTCCTCCTTGTGTGTTAGCCAGAGCTGTATGTGCCTGTTTGTGGACGGGTGGTTCGCCATCACGGTGACGGTGCTCCGCTGCATGACGGACGTGTTGCACTTGTGGAACATGTGGTTGCAGCTCAAGATGGCCAAACGCTACTCCTTCACGGCCATGGTTGGTGGGGATGGTGGAGGAGCCAATGGGCTGCGCGACACTAGTCCAAGGTCTGTGGCTCTCAAGTACTTGAAGTCGAAGAAGGGGTTTCTGTTTGACCTCTTTGTTATTATCCCAATACCCCAGGTCAGAATTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0008324 GO:0009626 GO:0009987 GO:0012501 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0033554 GO:0034050 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

188

Amino Acids

20.7

Weight (kDa)

6.04

Isoelectric Point (pI)

61.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54250 AT5G54250 AT5G54250 AT5G54250
fragaria_vesca	FvH4_3g21060
malus_domestica	MD03G1218000.v1.1 MD11G1235800.v1.1
prunus_persica	Prupe.4G191200_v2.0.a1
pyrus_communis	pycom03g16750 pycom1049g00060 pycom1049g00070 pycom11g20730
rosa_chinensis	RchiOBHm_Chr5g0036081 RchiOBHm_Chr5g0036091
rosa_laevigata	RLG00000033664
rosa_multiflora	Rmu_sc0000382.1_g000031
rosa_roxburghii	Rroxscaffold_1G00044670
rosa_rugosa	Rorug05G0152600 Rorug05G0152600 Rorug05G0152600
rosa_samantha	Rh5AG246800 Rh5BG247100 Rh5CG278200 Rh5DG255700
rosa_wichuraiana	Rw5G022650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	186, 459
AciI	CCGC	2 cut(s)	186, 343
AcoI	YGGCCR	3 cut(s)	216, 396, 417
AcsI	RAATTY	3 cut(s)	18, 148, 555
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	4 cut(s)	99, 133, 166, 491
AfiI	CCNNNNNNNGG	1 cut(s)	307
AflIII	ACRYGT	3 cut(s)	173, 357, 375
AgsI	TTSAA	2 cut(s)	250, 496
AhlI	ACTAGT	1 cut(s)	464
AjiI	CACGTC	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	546
AloI	GAACNNNNNNTCC	2 cut(s)	302, 334
AluBI	AGCT	2 cut(s)	291, 388
AluI	AGCT	2 cut(s)	291, 388
Alw21I	GWGCWC	1 cut(s)	342
Ama87I	CYCGRG	1 cut(s)	231
AoxI	GGCC	4 cut(s)	199, 216, 396, 417
ApeKI	GCWGC	3 cut(s)	345, 385, 454
ApoI	RAATTY	3 cut(s)	18, 148, 555
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AspLEI	GCGC	1 cut(s)	459
AspS9I	GGNCC	1 cut(s)	200
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	343
AvaI	CYCGRG	1 cut(s)	231
BalI	TGGCCA	1 cut(s)	398
BauI	CACGAG	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	3 cut(s)	332, 397, 441
BccI	CCATC	4 cut(s)	116, 332, 388, 428
BceAI	ACGGC	1 cut(s)	432
BciT130I	CCWGG	1 cut(s)	548
BcnI	CCSGG	1 cut(s)	203
BcuI	ACTAGT	1 cut(s)	464
BfaI	CTAG	2 cut(s)	6, 465
BisI	GCNGC	4 cut(s)	187, 346, 386, 455
BlsI	GCNGC	4 cut(s)	188, 347, 387, 456
BmcAI	AGTACT	1 cut(s)	491
Bme1390I	CCNGG	2 cut(s)	203, 548
BmeT110I	CYCGRG	1 cut(s)	231
BmgBI	CACGTC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	445
BmrFI	CCNGG	2 cut(s)	203, 548
BoxI	GACNNNNGTC	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	111
BpuEI	CTTGAG	2 cut(s)	374, 470
BpuMI	CCSGG	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	420, 470, 546
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 189, 219
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	548
BseDI	CCNNGG	3 cut(s)	420, 470, 546
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	38
BseRI	GAGGAG	3 cut(s)	207, 210, 456
BseXI	GCAGC	3 cut(s)	332, 397, 441
Bsh1236I	CGCG	2 cut(s)	186, 459
BshFI	GGCC	4 cut(s)	201, 218, 398, 419
BsiHKAI	GWGCWC	1 cut(s)	342
BsiHKCI	CYCGRG	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	307
BsnI	GGCC	4 cut(s)	201, 218, 398, 419
BsoBI	CYCGRG	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp1407I	TGTACA	1 cut(s)	164
Bsp143I	GATC	2 cut(s)	79, 88
Bsp19I	CCATGG	1 cut(s)	420
BspACI	CCGC	2 cut(s)	186, 343
BspANI	GGCC	4 cut(s)	201, 218, 398, 419
BspCNI	CTCAG	1 cut(s)	37
BspFNI	CGCG	2 cut(s)	186, 459
BspLI	GGNNCC	1 cut(s)	445
BsrGI	TGTACA	1 cut(s)	164
BssECI	CCNNGG	3 cut(s)	420, 470, 546
BssMI	GATC	2 cut(s)	79, 88
BssSI	CACGAG	1 cut(s)	92
BssT1I	CCWWGG	2 cut(s)	420, 470
Bst2BI	CACGAG	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	2 cut(s)	331, 337
Bst6I	CTCTTC	1 cut(s)	108
BstAUI	TGTACA	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	24
BstDSI	CCRYGG	1 cut(s)	420
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	2 cut(s)	186, 459
BstHHI	GCGC	1 cut(s)	459
BstKTI	GATC	2 cut(s)	82, 91
BstMBI	GATC	2 cut(s)	79, 88
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 297
BstNI	CCWGG	1 cut(s)	548
BstNSI	RCATGY	3 cut(s)	43, 177, 379
BstPAI	GACNNNNGTC	1 cut(s)	465
BstSCI	CCNGG	2 cut(s)	201, 546
BstUI	CGCG	2 cut(s)	186, 459
BstV1I	GCAGC	3 cut(s)	332, 397, 441
BstV2I	GAAGAC	1 cut(s)	111
BsuRI	GGCC	4 cut(s)	201, 218, 398, 419
BtgI	CCRYGG	1 cut(s)	420
BtgZI	GCGATG	1 cut(s)	167
BtrI	CACGTC	1 cut(s)	358
BtsCI	GGATG	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	41
CfoI	GCGC	1 cut(s)	459
Cfr13I	GGNCC	1 cut(s)	200
Csp6I	GTAC	4 cut(s)	98, 132, 165, 490
CspCI	CAANNNNNGTGG	2 cut(s)	459, 494
CviAII	CATG	6 cut(s)	40, 140, 174, 349, 376, 421
CviQI	GTAC	4 cut(s)	98, 132, 165, 490
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	2 cut(s)	81, 90
DpnII	GATC	2 cut(s)	79, 88
EaeI	YGGCCR	3 cut(s)	216, 396, 417
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco130I	CCWWGG	2 cut(s)	420, 470
Eco57I	CTGAAG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	231
EcoRI	GAATTC	1 cut(s)	555
EcoRII	CCWGG	1 cut(s)	546
EcoT14I	CCWWGG	2 cut(s)	420, 470
EcoT22I	ATGCAT	1 cut(s)	45
ErhI	CCWWGG	2 cut(s)	420, 470
FaeI	CATG	6 cut(s)	43, 143, 177, 352, 379, 424
FaiI	YATR	8 cut(s)	41, 45, 141, 175, 296, 350, 377, 422
FatI	CATG	6 cut(s)	39, 139, 173, 348, 375, 420
Fnu4HI	GCNGC	4 cut(s)	187, 346, 386, 455
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	4 cut(s)	187, 346, 386, 455
FspBI	CTAG	2 cut(s)	6, 465
GlaI	GCGC	1 cut(s)	458
GluI	GCNGC	4 cut(s)	187, 346, 386, 455
HaeIII	GGCC	4 cut(s)	201, 218, 398, 419
HapII	CCGG	1 cut(s)	203
HhaI	GCGC	1 cut(s)	459
Hin1II	CATG	6 cut(s)	43, 143, 177, 352, 379, 424
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	4 cut(s)	27, 58, 70, 554
Hpy188III	TCNNGA	5 cut(s)	83, 92, 226, 250, 391
Hpy8I	GTNNAC	1 cut(s)	310
Hpy99I	CGWCG	2 cut(s)	62, 113
HpyAV	CCTTC	2 cut(s)	421, 499
HpyCH4III	ACNGT	2 cut(s)	331, 337
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	4 cut(s)	43, 348, 364, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 297
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	6 cut(s)	43, 143, 177, 352, 379, 424
HspAI	GCGC	1 cut(s)	457
Kzo9I	GATC	2 cut(s)	79, 88
LmnI	GCTCC	2 cut(s)	345, 443
LpnPI	CCDG	6 cut(s)	216, 246, 299, 314, 533, 560
Lsp1109I	GCAGC	3 cut(s)	332, 397, 441
MaeI	CTAG	2 cut(s)	6, 465
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	2 cut(s)	209, 331
MalI	GATC	2 cut(s)	81, 90
MboI	GATC	2 cut(s)	79, 88
MboII	GAAGA	6 cut(s)	24, 89, 98, 116, 125, 514
MhlI	GDGCHC	1 cut(s)	342
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	3 cut(s)	18, 148, 555
MluNI	TGGCCA	1 cut(s)	398
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	8 cut(s)	88, 137, 185, 188, 191, 280, 434, 533
Mox20I	TGGCCA	1 cut(s)	398
Mph1103I	ATGCAT	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	398
MslI	CAYNNNNRTG	2 cut(s)	329, 419
Msp20I	TGGCCA	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	345
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	2 cut(s)	203, 548
MvaI	CCWGG	1 cut(s)	548
MvnI	CGCG	2 cut(s)	186, 459
MwoI	GCNNNNNNNGC	2 cut(s)	10, 297
NciI	CCSGG	1 cut(s)	203
NcoI	CCATGG	1 cut(s)	420
NdeII	GATC	2 cut(s)	79, 88
NlaIII	CATG	6 cut(s)	43, 143, 177, 352, 379, 424
NlaIV	GGNNCC	1 cut(s)	445
NmeAIII	GCCGAG	1 cut(s)	194
NmuCI	GTSAC	2 cut(s)	209, 331
NsiI	ATGCAT	1 cut(s)	45
NspI	RCATGY	3 cut(s)	43, 177, 379
PaeI	GCATGC	1 cut(s)	43
PciI	ACATGT	2 cut(s)	173, 375
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	65
PkrI	GCNGC	4 cut(s)	188, 347, 387, 456
PscI	ACATGT	2 cut(s)	173, 375
PshAI	GACNNNNGTC	1 cut(s)	465
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	1 cut(s)	445
PspPI	GGNCC	1 cut(s)	200
PsrI	GAACNNNNNNTAC	2 cut(s)	148, 180
RsaI	GTAC	4 cut(s)	99, 133, 166, 491
RsaNI	GTAC	4 cut(s)	98, 132, 165, 490
RseI	CAYNNNNRTG	2 cut(s)	329, 419
SatI	GCNGC	4 cut(s)	187, 346, 386, 455
Sau3AI	GATC	2 cut(s)	79, 88
Sau96I	GGNCC	1 cut(s)	200
ScaI	AGTACT	1 cut(s)	491
ScrFI	CCNGG	2 cut(s)	203, 548
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	7 cut(s)	99, 293, 360, 390, 476, 525, 552
SmiMI	CAYNNNNRTG	2 cut(s)	329, 419
SmlI	CTYRAG	2 cut(s)	389, 485
SmoI	CTYRAG	2 cut(s)	389, 485
SpeI	ACTAGT	1 cut(s)	464
SphI	GCATGC	1 cut(s)	43
Sse9I	AATT	3 cut(s)	18, 148, 555
SsiI	CCGC	2 cut(s)	186, 343
SspMI	CTAG	2 cut(s)	6, 465
StyD4I	CCNGG	2 cut(s)	201, 546
StyI	CCWWGG	2 cut(s)	420, 470
TaaI	ACNGT	2 cut(s)	331, 337
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	2 cut(s)	227, 500
TasI	AATT	3 cut(s)	18, 148, 555
TatI	WGTACW	3 cut(s)	131, 164, 489
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	65
TseFI	GTSAC	2 cut(s)	209, 331
TseI	GCWGC	3 cut(s)	345, 385, 454
Tsp45I	GTSAC	2 cut(s)	209, 331
TspDTI	ATGAA	2 cut(s)	78, 170
TspGWI	ACGGA	1 cut(s)	368
XapI	RAATTY	3 cut(s)	18, 148, 555
XceI	RCATGY	3 cut(s)	43, 177, 379
XspI	CTAG	2 cut(s)	6, 465
ZrmI	AGTACT	1 cut(s)	491
Zsp2I	ATGCAT	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.