Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002563

Physical Location & Seq

Genomic Coordinates Reverse (-)

20523712 .. 20525414

Gene Structure 1703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g19900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGCAGAGAAAACCTCCTGTGCCGTTTACACAAAAATTTCCTAAAGCAGATCCTCTAGCGCTGCGCCTATTACAAAGGCTATTGGCTTTTGACCCAAAGGATAGACCAACTGCTGAGCAGGCACTAGCTGATCCTTACTTCAAGGGTCTAGCCAAAGTTGAGAGAGAACCTTCTTGCCAGCCTATTTCGAAGATGGAATTTGAATTTGAAAGGCGAAGAGTCACAAAGGAGGACATCAGGGAACTAATTTACCGGGAAATACTAGAATACCATCCTCAGCTACTTAAGGACTACATGAATGGAACTGAAGGCACAAGTTTTACGTATCCGAGTGCAATAGGCCAATTCAGAAAGCAATTTGCTTATCTCGAGGAAAATGGTGGGAAAAGTGGACCGGTAATTCCTCCAGAGAGGAAGCATGTCTCCCTTCCACGATCCACCGTTCACTCAAGTACAGTCCCCCCTAATGCACAGTCAAATTTGGTCTCGTATGAGAATCGACAGACAGAAGAGGCTTCTAGCAGTTTTAGAGTAACGGACACAATTTCTGGAAATGCACCAAAAGTTTCAAGGCCACCACCGAGGGTGCCAACAGCAAAACCTGGGCGAGTTGTTGGACCAATTCTTCCATACGAGAATGGCAGAAATGTGAAGGAAATGTATGATCCGAGGACGTTATGCAGAAACGCAGTTCCTCCTCAGTCTGTCTCTCCACACTGCTTCTTCAGAATTCATACTGCCAACCAAGACAAGGCCGGAGTGGAGGTGCAGAGGTATGAATCACATGCTAAACTGCAACCCCAACCCGAACAGTGCAACTTAGCAGCAAAGCCTTCTCCGGGCATGGCCATTGAAGTCAATACAAACCCGTACTACCCACCACCTGCCAAAGTAGATCAATTAAGCTCGATAGATTCAAAATTACTGCACGCGCAATCTCAGTTTGGTCCTGTAGGTGCCGCTGCTGTAGCTGTAGCTGCTCACCGGAACACTGGAGCTGTTCGGTATGGATTGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

340

Amino Acids

37.79

Weight (kDa)

9.43

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53510 AT3G14720 AT3G14720 AT3G14720
fragaria_vesca	FvH4_3g17440 FvH4_3g17440 FvH4_3g17440 FvH4_6g38240 FvH4_6g38240 FvH4_6g38240 FvH4_6g38240 FvH4_6g38240
malus_domestica	MD03G1251600.v1.1 MD09G1151800.v1.1 MD11G1272700.v1.1 MD17G1139400.v1.1
prunus_persica	Prupe.3G172800_v2.0.a1 Prupe.3G172800_v2.0.a1 Prupe.4G154700_v2.0.a1
pyrus_communis	pycom03g19900
rosa_chinensis	RchiOBHm_Chr2g0151501 RchiOBHm_Chr5g0028971
rosa_laevigata	RLG00000020555 RLG00000033132
rosa_multiflora	Rmu_sc0000940.1_g000020 Rmu_sc0010209.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050920 Rroxscaffold_2G00096400
rosa_rugosa	Rorug02G0426600 Rorug05G0112100
rosa_samantha	Rh2AG487400 Rh2BG499800 Rh2CG473800 Rh2DG511000 Rh5AG204100 Rh5BG202400 Rh5CG223200 Rh5DG206200
rosa_wichuraiana	Rw2G039950 Rw5G018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	892
Acc36I	ACCTGC	1 cut(s)	892
AccB1I	GGYRCC	2 cut(s)	586, 956
AccII	CGCG	1 cut(s)	932
AciI	CCGC	1 cut(s)	960
AclWI	GGATC	4 cut(s)	44, 125, 429, 659
AcoI	YGGCCR	1 cut(s)	846
AcsI	RAATTY	5 cut(s)	35, 197, 203, 478, 729
AcuI	CTGAAG	2 cut(s)	327, 709
AfaI	GTAC	2 cut(s)	454, 872
AfeI	AGCGCT	1 cut(s)	60
AfiI	CCNNNNNNNGG	2 cut(s)	751, 839
AflII	CTTAAG	1 cut(s)	284
AgeI	ACCGGT	1 cut(s)	394
AgsI	TTSAA	6 cut(s)	142, 203, 209, 570, 854, 918
AjnI	CCWGG	1 cut(s)	601
AluBI	AGCT	6 cut(s)	128, 280, 906, 971, 977, 998
AluI	AGCT	6 cut(s)	128, 280, 906, 971, 977, 998
Alw26I	GTCTC	3 cut(s)	427, 490, 712
AlwI	GGATC	4 cut(s)	44, 125, 429, 659
Ama87I	CYCGRG	1 cut(s)	368
Aor51HI	AGCGCT	1 cut(s)	60
AoxI	GGCC	4 cut(s)	340, 572, 753, 846
ApeKI	GCWGC	4 cut(s)	61, 824, 962, 977
ApoI	RAATTY	5 cut(s)	35, 197, 203, 478, 729
AsiGI	ACCGGT	1 cut(s)	394
AspLEI	GCGC	3 cut(s)	61, 66, 934
AspS9I	GGNCC	3 cut(s)	392, 617, 947
AsuC2I	CCSGG	2 cut(s)	254, 840
AsuHPI	GGTGA	1 cut(s)	974
AsuII	TTCGAA	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	368
AvaII	GGWCC	3 cut(s)	392, 617, 947
BalI	TGGCCA	1 cut(s)	848
BanI	GGYRCC	2 cut(s)	586, 956
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	4 cut(s)	48, 836, 949, 964
BccI	CCATC	2 cut(s)	187, 279
BceAI	ACGGC	1 cut(s)	7
BciT130I	CCWGG	1 cut(s)	603
BciVI	GTATCC	1 cut(s)	336
BcnI	CCSGG	2 cut(s)	254, 840
BcoDI	GTCTC	3 cut(s)	427, 490, 712
BfaI	CTAG	5 cut(s)	56, 125, 149, 263, 519
BfmI	CTRYAG	3 cut(s)	951, 966, 972
BfoI	RGCGCY	1 cut(s)	62
BfrI	CTTAAG	1 cut(s)	284
BfuAI	ACCTGC	1 cut(s)	892
BfuI	GTATCC	1 cut(s)	336
BisI	GCNGC	5 cut(s)	62, 825, 960, 963, 978
BlpI	GCTNAGC	1 cut(s)	114
BlsI	GCNGC	5 cut(s)	63, 826, 961, 964, 979
Bme1390I	CCNGG	3 cut(s)	254, 603, 840
Bme18I	GGWCC	3 cut(s)	392, 617, 947
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	3 cut(s)	392, 617, 947
BmiI	GGNNCC	2 cut(s)	588, 958
BmrFI	CCNGG	3 cut(s)	254, 603, 840
BplI	GAGNNNNNCTC	1 cut(s)	30
BpmI	CTGGAG	2 cut(s)	390, 1014
Bpu10I	CCTNAGC	1 cut(s)	276
Bpu1102I	GCTNAGC	1 cut(s)	114
Bpu14I	TTCGAA	1 cut(s)	188
BpuEI	CTTGAG	1 cut(s)	433
BpuMI	CCSGG	2 cut(s)	254, 840
BsaAI	YACGTR	1 cut(s)	324
BsaI	GGTCTC	1 cut(s)	490
BsaJI	CCNNGG	3 cut(s)	581, 602, 668
BsaWI	WCCGGW	2 cut(s)	394, 984
BsaXI	ACNNNNNCTCC	2 cut(s)	750, 780
Bsc4I	CCNNNNNNNGG	2 cut(s)	751, 839
Bse118I	RCCGGY	1 cut(s)	394
Bse1I	ACTGG	1 cut(s)	997
BseBI	CCWGG	1 cut(s)	603
BseDI	CCNNGG	3 cut(s)	581, 602, 668
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	2 cut(s)	751, 839
BseMII	CTCAG	4 cut(s)	105, 290, 713, 953
BseNI	ACTGG	1 cut(s)	997
BseRI	GAGGAG	1 cut(s)	687
BseXI	GCAGC	4 cut(s)	48, 836, 949, 964
BsgI	GTGCAG	2 cut(s)	788, 911
Bsh1236I	CGCG	1 cut(s)	932
BshFI	GGCC	4 cut(s)	342, 574, 755, 848
BshNI	GGYRCC	2 cut(s)	586, 956
BshTI	ACCGGT	1 cut(s)	394
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	5 cut(s)	253, 395, 756, 839, 985
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	2 cut(s)	751, 839
BsmAI	GTCTC	3 cut(s)	427, 490, 712
BsmFI	GGGAC	1 cut(s)	443
BsnI	GGCC	4 cut(s)	342, 574, 755, 848
Bso31I	GGTCTC	1 cut(s)	490
BsoBI	CYCGRG	1 cut(s)	368
Bsp119I	TTCGAA	1 cut(s)	188
Bsp143I	GATC	5 cut(s)	49, 130, 434, 664, 895
Bsp1720I	GCTNAGC	1 cut(s)	114
BspACI	CCGC	1 cut(s)	960
BspANI	GGCC	4 cut(s)	342, 574, 755, 848
BspCNI	CTCAG	4 cut(s)	106, 289, 712, 952
BspFNI	CGCG	1 cut(s)	932
BspLI	GGNNCC	2 cut(s)	588, 958
BspMI	ACCTGC	1 cut(s)	892
BspPI	GGATC	4 cut(s)	44, 125, 429, 659
BspT104I	TTCGAA	1 cut(s)	188
BspT107I	GGYRCC	2 cut(s)	586, 956
BspTI	CTTAAG	1 cut(s)	284
BspTNI	GGTCTC	1 cut(s)	490
BsrFI	RCCGGY	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	997
BssAI	RCCGGY	1 cut(s)	394
BssECI	CCNNGG	3 cut(s)	581, 602, 668
BssMI	GATC	5 cut(s)	49, 130, 434, 664, 895
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	4 cut(s)	442, 457, 474, 813
Bst6I	CTCTTC	2 cut(s)	211, 504
BstAFI	CTTAAG	1 cut(s)	284
BstBAI	YACGTR	1 cut(s)	324
BstBI	TTCGAA	1 cut(s)	188
BstC8I	GCNNGC	3 cut(s)	120, 179, 930
BstDEI	CTNAG	5 cut(s)	114, 276, 699, 820, 939
BstF5I	GGATG	1 cut(s)	271
BstFNI	CGCG	1 cut(s)	932
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	3 cut(s)	61, 66, 934
BstKTI	GATC	5 cut(s)	52, 133, 437, 667, 898
BstMAI	GTCTC	3 cut(s)	427, 490, 712
BstMBI	GATC	5 cut(s)	49, 130, 434, 664, 895
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 968, 977
BstNI	CCWGG	1 cut(s)	603
BstNSI	RCATGY	2 cut(s)	422, 788
BstSCI	CCNGG	3 cut(s)	252, 601, 838
BstSFI	CTRYAG	3 cut(s)	951, 966, 972
BstSNI	TACGTA	1 cut(s)	324
BstUI	CGCG	1 cut(s)	932
BstV1I	GCAGC	4 cut(s)	48, 836, 949, 964
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	336
BsuRI	GGCC	4 cut(s)	342, 574, 755, 848
BtsCI	GGATG	1 cut(s)	271
BtsI	GCAGTG	1 cut(s)	715
BtsIMutI	CAGTG	3 cut(s)	715, 818, 990
BveI	ACCTGC	1 cut(s)	892
Cac8I	GCNNGC	3 cut(s)	120, 179, 930
CfoI	GCGC	3 cut(s)	61, 66, 934
Cfr10I	RCCGGY	1 cut(s)	394
Cfr13I	GGNCC	3 cut(s)	392, 617, 947
Csp6I	GTAC	2 cut(s)	453, 871
CspAI	ACCGGT	1 cut(s)	394
CviAII	CATG	4 cut(s)	295, 419, 785, 844
CviQI	GTAC	2 cut(s)	453, 871
DdeI	CTNAG	5 cut(s)	114, 276, 699, 820, 939
DpnI	GATC	5 cut(s)	51, 132, 436, 666, 897
DpnII	GATC	5 cut(s)	49, 130, 434, 664, 895
EaeI	YGGCCR	1 cut(s)	846
Eam1104I	CTCTTC	2 cut(s)	211, 504
EarI	CTCTTC	2 cut(s)	211, 504
Eco105I	TACGTA	1 cut(s)	324
Eco31I	GGTCTC	1 cut(s)	490
Eco47I	GGWCC	3 cut(s)	392, 617, 947
Eco47III	AGCGCT	1 cut(s)	60
Eco57I	CTGAAG	2 cut(s)	327, 709
Eco88I	CYCGRG	1 cut(s)	368
EcoRI	GAATTC	1 cut(s)	729
EcoRII	CCWGG	1 cut(s)	601
FaeI	CATG	4 cut(s)	298, 422, 788, 847
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	4 cut(s)	294, 418, 784, 843
Fnu4HI	GCNGC	5 cut(s)	62, 825, 960, 963, 978
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	5 cut(s)	62, 825, 960, 963, 978
FspBI	CTAG	5 cut(s)	56, 125, 149, 263, 519
GlaI	GCGC	3 cut(s)	60, 65, 933
GluI	GCNGC	5 cut(s)	62, 825, 960, 963, 978
GsuI	CTGGAG	2 cut(s)	390, 1014
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	4 cut(s)	342, 574, 755, 848
HapII	CCGG	5 cut(s)	253, 395, 756, 839, 985
HhaI	GCGC	3 cut(s)	61, 66, 934
Hin1II	CATG	4 cut(s)	298, 422, 788, 847
Hin6I	GCGC	3 cut(s)	59, 64, 932
HinP1I	GCGC	3 cut(s)	59, 64, 932
HinfI	GANTC	4 cut(s)	219, 496, 779, 914
HpaII	CCGG	5 cut(s)	253, 395, 756, 839, 985
HphI	GGTGA	1 cut(s)	974
Hpy166II	GTNNAC	3 cut(s)	27, 392, 445
Hpy188I	TCNGA	4 cut(s)	330, 350, 669, 728
Hpy188III	TCNNGA	4 cut(s)	368, 407, 549, 1017
Hpy8I	GTNNAC	3 cut(s)	27, 392, 445
HpyAV	CCTTC	5 cut(s)	180, 302, 437, 646, 843
HpyCH4III	ACNGT	4 cut(s)	442, 457, 474, 813
HpyCH4IV	ACGT	2 cut(s)	323, 674
HpyCH4V	TGCA	9 cut(s)	4, 335, 470, 557, 681, 769, 796, 816, 928
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 968, 977
HpyF3I	CTNAG	5 cut(s)	114, 276, 699, 820, 939
HpySE526I	ACGT	2 cut(s)	323, 674
Hsp92II	CATG	4 cut(s)	298, 422, 788, 847
HspAI	GCGC	3 cut(s)	59, 64, 932
Kzo9I	GATC	5 cut(s)	49, 130, 434, 664, 895
LmnI	GCTCC	1 cut(s)	995
Lsp1109I	GCAGC	4 cut(s)	48, 836, 949, 964
MaeI	CTAG	5 cut(s)	56, 125, 149, 263, 519
MaeII	ACGT	2 cut(s)	323, 674
MaeIII	GTNAC	2 cut(s)	220, 532
MalI	GATC	5 cut(s)	51, 132, 436, 666, 897
MboI	GATC	5 cut(s)	49, 130, 434, 664, 895
MboII	GAAGA	5 cut(s)	202, 228, 521, 617, 715
MflI	RGATCY	1 cut(s)	49
MlsI	TGGCCA	1 cut(s)	848
MluNI	TGGCCA	1 cut(s)	848
MlyI	GAGTC	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	595
Mox20I	TGGCCA	1 cut(s)	848
MscI	TGGCCA	1 cut(s)	848
MseI	TTAA	2 cut(s)	285, 902
Msp20I	TGGCCA	1 cut(s)	848
MspA1I	CMGCKG	1 cut(s)	962
MspCI	CTTAAG	1 cut(s)	284
MspI	CCGG	5 cut(s)	253, 395, 756, 839, 985
MspR9I	CCNGG	3 cut(s)	254, 603, 840
MteI	GCGCNGCGC	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	603
MvnI	CGCG	1 cut(s)	932
MwoI	GCNNNNNNNGC	3 cut(s)	119, 968, 977
NciI	CCSGG	2 cut(s)	254, 840
NdeII	GATC	5 cut(s)	49, 130, 434, 664, 895
NlaIII	CATG	4 cut(s)	298, 422, 788, 847
NlaIV	GGNNCC	2 cut(s)	588, 958
NmuCI	GTSAC	1 cut(s)	220
NspI	RCATGY	2 cut(s)	422, 788
NspV	TTCGAA	1 cut(s)	188
PaeR7I	CTCGAG	1 cut(s)	368
PaqCI	CACCTGC	1 cut(s)	892
PfeI	GAWTC	3 cut(s)	496, 779, 914
PinAI	ACCGGT	1 cut(s)	394
PkrI	GCNGC	5 cut(s)	63, 826, 961, 964, 979
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
Ppu21I	YACGTR	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	601
PspN4I	GGNNCC	2 cut(s)	588, 958
PspPI	GGNCC	3 cut(s)	392, 617, 947
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	2 cut(s)	454, 872
RsaNI	GTAC	2 cut(s)	453, 871
SaqAI	TTAA	2 cut(s)	285, 902
SatI	GCNGC	5 cut(s)	62, 825, 960, 963, 978
Sau3AI	GATC	5 cut(s)	49, 130, 434, 664, 895
Sau96I	GGNCC	3 cut(s)	392, 617, 947
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	3 cut(s)	254, 603, 840
SfcI	CTRYAG	3 cut(s)	951, 966, 972
Sfr274I	CTCGAG	1 cut(s)	368
SfuI	TTCGAA	1 cut(s)	188
SinI	GGWCC	3 cut(s)	392, 617, 947
SlaI	CTCGAG	1 cut(s)	368
SmlI	CTYRAG	3 cut(s)	284, 368, 448
SmoI	CTYRAG	3 cut(s)	284, 368, 448
SnaBI	TACGTA	1 cut(s)	324
SsiI	CCGC	1 cut(s)	960
SspMI	CTAG	5 cut(s)	56, 125, 149, 263, 519
StyD4I	CCNGG	3 cut(s)	252, 601, 838
TaaI	ACNGT	4 cut(s)	442, 457, 474, 813
TaiI	ACGT	2 cut(s)	326, 677
TaqI	TCGA	4 cut(s)	188, 369, 499, 908
TatI	WGTACW	1 cut(s)	452
TauI	GCSGC	1 cut(s)	962
TfiI	GAWTC	3 cut(s)	496, 779, 914
Tru1I	TTAA	2 cut(s)	285, 902
Tru9I	TTAA	2 cut(s)	285, 902
TscAI	CASTG	3 cut(s)	722, 818, 997
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	4 cut(s)	61, 824, 962, 977
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	3 cut(s)	311, 722, 792
TspGWI	ACGGA	1 cut(s)	551
TspRI	CASTG	3 cut(s)	722, 818, 997
Vha464I	CTTAAG	1 cut(s)	284
VpaK11BI	GGWCC	3 cut(s)	392, 617, 947
XapI	RAATTY	5 cut(s)	35, 197, 203, 478, 729
XceI	RCATGY	2 cut(s)	422, 788
XhoI	CTCGAG	1 cut(s)	368
XspI	CTAG	5 cut(s)	56, 125, 149, 263, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.