Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002563

Physical Location & Seq

Genomic Coordinates Forward (+)

9979650 .. 9981462

Gene Structure 1813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0112100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCCTGCTTTGTACCTTTCAATAATAGGAACTTGGATATAAGTATCTTCGTGTTTAGGCCAACAGTAGTACACGTTGATGAACTTCTTGCTGGGCTCAAGCAATTCTCTCTGTGCACGGAGACTCTTGGTTGTGTACAAAGTTCTATCTTGCAGAGCATCCATGGAAATATGATCATATGGTTTGGAGCATGGCTGAAGAGATCTTCTGAGAATAAGGATTCATTGACTGCAAGTCTTCTCTCGATGCTCTCGAACCTATCAACAAAGGCGACGTTAGTCGATCACACCTTCTTCGATGCATATGCAGGAGAATCAAGAGACGGGTCTTGTGCTGCAAAGTTCTGCACCGGCGACACAGTCTCAATGAGTGCAGCAGCCTTCAACGGTGCCGGTGACGTTAGCGATGTCTCTTATGCATGCTTAGCTCTCTTCAAGTCTAGTTTCCACAAGATGGAAGGCGTGAGATCTGGGGTTTGTTTGAAATCCCAAACCAACCCAAGCATTGCTTGTTTCTACGTGTGGAAGTCTCTTCAATATTGTTACTCGTGGATTCTAAGCTCGGACCAAAGAAAAGCACTGCTCCCTTATTTTGAAAGCTACTCTATCGATATTAAGTATGACATTTTTAGAGTGGTATATGTTGGTGGTGACAATGAACCCAAGTTTCAGTTCTTCTATCCTCACCAGATATTGGAGCAAACAGCTGGAGGAGAAAGCAAAGATGAAGGTAAGCTTAGGCATAGTGCTTCCATTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

253

Amino Acids

28.09

Weight (kDa)

6.29

Isoelectric Point (pI)

55.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7392	PF24118	98 - 210	2.7e-53	Domain of unknown function (DUF7392)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53510 AT3G14720 AT3G14720 AT3G14720
fragaria_vesca	FvH4_3g17440 FvH4_3g17440 FvH4_3g17440 FvH4_6g38240 FvH4_6g38240 FvH4_6g38240 FvH4_6g38240 FvH4_6g38240
malus_domestica	MD03G1251600.v1.1 MD09G1151800.v1.1 MD11G1272700.v1.1 MD17G1139400.v1.1
prunus_persica	Prupe.3G172800_v2.0.a1 Prupe.3G172800_v2.0.a1 Prupe.4G154700_v2.0.a1
pyrus_communis	pycom03g19900
rosa_chinensis	RchiOBHm_Chr2g0151501 RchiOBHm_Chr5g0028971
rosa_laevigata	RLG00000020555 RLG00000033132
rosa_multiflora	Rmu_sc0000940.1_g000020 Rmu_sc0010209.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050920 Rroxscaffold_2G00096400
rosa_rugosa	Rorug02G0426600 Rorug05G0112100
rosa_samantha	Rh2AG487400 Rh2BG499800 Rh2CG473800 Rh2DG511000 Rh5AG204100 Rh5BG202400 Rh5CG223200 Rh5DG206200
rosa_wichuraiana	Rw2G039950 Rw5G018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	389
AccB7I	CCANNNNNTGG	2 cut(s)	454, 694
AcuI	CTGAAG	1 cut(s)	218
AfaI	GTAC	3 cut(s)	15, 72, 138
AfiI	CCNNNNNNNGG	2 cut(s)	454, 694
AflIII	ACRYGT	2 cut(s)	73, 519
AgsI	TTSAA	6 cut(s)	22, 385, 436, 484, 536, 596
AhdI	GACNNNNNGTC	1 cut(s)	234
AjuI	GAANNNNNNNTTGG	2 cut(s)	656, 688
AluBI	AGCT	5 cut(s)	428, 561, 600, 707, 736
AluI	AGCT	5 cut(s)	428, 561, 600, 707, 736
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	5 cut(s)	116, 315, 367, 415, 534
Alw44I	GTGCAC	1 cut(s)	115
AoxI	GGCC	2 cut(s)	3, 59
ApaLI	GTGCAC	1 cut(s)	115
ApeKI	GCWGC	3 cut(s)	335, 374, 377
AspS9I	GGNCC	1 cut(s)	565
AsuHPI	GGTGA	3 cut(s)	407, 662, 677
AvaII	GGWCC	1 cut(s)	565
BaeGI	GKGCMC	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	389
BanII	GRGCYC	1 cut(s)	99
BauI	CACGAG	1 cut(s)	547
BbsI	GAAGAC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	3 cut(s)	322, 386, 389
BccI	CCATC	1 cut(s)	448
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BclI	TGATCA	1 cut(s)	174
BcoDI	GTCTC	5 cut(s)	116, 315, 367, 415, 534
BfaI	CTAG	1 cut(s)	441
BglII	AGATCT	2 cut(s)	203, 467
BisI	GCNGC	3 cut(s)	336, 375, 378
BlpI	GCTNAGC	1 cut(s)	424
BlsI	GCNGC	3 cut(s)	337, 376, 379
Bme18I	GGWCC	1 cut(s)	565
BmeRI	GACNNNNNGTC	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	565
BmiI	GGNNCC	1 cut(s)	391
BmsI	GCATC	3 cut(s)	168, 237, 289
BoxI	GACNNNNGTC	1 cut(s)	278
BpiI	GAAGAC	1 cut(s)	230
BpmI	CTGGAG	1 cut(s)	729
Bpu10I	CCTNAGC	1 cut(s)	737
Bpu1102I	GCTNAGC	1 cut(s)	424
BpuEI	CTTGAG	1 cut(s)	83
Bsa29I	ATCGAT	1 cut(s)	609
BsaAI	YACGTR	1 cut(s)	520
BsaJI	CCNNGG	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	2 cut(s)	454, 694
Bse118I	RCCGGY	2 cut(s)	350, 392
Bse3DI	GCAATG	1 cut(s)	504
BseCI	ATCGAT	1 cut(s)	609
BseDI	CCNNGG	1 cut(s)	163
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	2 cut(s)	454, 694
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	726
BseSI	GKGCMC	1 cut(s)	119
BseXI	GCAGC	3 cut(s)	322, 386, 389
BseYI	CCCAGC	1 cut(s)	92
BsgI	GTGCAG	2 cut(s)	331, 393
BshFI	GGCC	2 cut(s)	5, 61
BshNI	GGYRCC	1 cut(s)	389
BshVI	ATCGAT	1 cut(s)	609
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	351, 393
BslI	CCNNNNNNNGG	2 cut(s)	454, 694
BsmAI	GTCTC	5 cut(s)	116, 315, 367, 415, 534
BsmBI	CGTCTC	1 cut(s)	315
BsnI	GGCC	2 cut(s)	5, 61
Bsp1286I	GDGCHC	2 cut(s)	99, 119
Bsp1407I	TGTACA	1 cut(s)	136
Bsp143I	GATC	4 cut(s)	174, 203, 283, 467
Bsp1720I	GCTNAGC	1 cut(s)	424
Bsp19I	CCATGG	1 cut(s)	163
BspANI	GGCC	2 cut(s)	5, 61
BspCNI	CTCAG	1 cut(s)	202
BspDI	ATCGAT	1 cut(s)	609
BspLI	GGNNCC	1 cut(s)	391
BspT107I	GGYRCC	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	504
BsrFI	RCCGGY	2 cut(s)	350, 392
BsrGI	TGTACA	1 cut(s)	136
BssAI	RCCGGY	2 cut(s)	350, 392
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	4 cut(s)	174, 203, 283, 467
BssSI	CACGAG	1 cut(s)	547
BssT1I	CCWWGG	1 cut(s)	163
Bst2BI	CACGAG	1 cut(s)	547
Bst4CI	ACNGT	3 cut(s)	67, 361, 389
Bst6I	CTCTTC	3 cut(s)	194, 437, 537
BstAUI	TGTACA	1 cut(s)	136
BstBAI	YACGTR	1 cut(s)	520
BstC8I	GCNNGC	2 cut(s)	7, 421
BstDEI	CTNAG	4 cut(s)	210, 424, 557, 737
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	159
BstKTI	GATC	4 cut(s)	177, 206, 286, 470
BstMAI	GTCTC	5 cut(s)	116, 315, 367, 415, 534
BstMBI	GATC	4 cut(s)	174, 203, 283, 467
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNSI	RCATGY	1 cut(s)	423
BstPAI	GACNNNNGTC	1 cut(s)	278
BstSLI	GKGCMC	1 cut(s)	119
BstV1I	GCAGC	3 cut(s)	322, 386, 389
BstV2I	GAAGAC	1 cut(s)	230
BstX2I	RGATCY	2 cut(s)	203, 467
BstYI	RGATCY	2 cut(s)	203, 467
Bsu15I	ATCGAT	1 cut(s)	609
BsuRI	GGCC	2 cut(s)	5, 61
BsuTUI	ATCGAT	1 cut(s)	609
BtgI	CCRYGG	1 cut(s)	163
BtgZI	GCGATG	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	159
BtsI	GCAGTG	1 cut(s)	578
BtsIMutI	CAGTG	1 cut(s)	578
Cac8I	GCNNGC	2 cut(s)	7, 421
Cfr10I	RCCGGY	2 cut(s)	350, 392
Cfr13I	GGNCC	1 cut(s)	565
ClaI	ATCGAT	1 cut(s)	609
Csp6I	GTAC	3 cut(s)	14, 71, 137
CviAII	CATG	3 cut(s)	164, 192, 420
CviQI	GTAC	3 cut(s)	14, 71, 137
DdeI	CTNAG	4 cut(s)	210, 424, 557, 737
DpnI	GATC	4 cut(s)	176, 205, 285, 469
DpnII	GATC	4 cut(s)	174, 203, 283, 467
DriI	GACNNNNNGTC	1 cut(s)	234
Eam1104I	CTCTTC	3 cut(s)	194, 437, 537
Eam1105I	GACNNNNNGTC	1 cut(s)	234
EarI	CTCTTC	3 cut(s)	194, 437, 537
Eco130I	CCWWGG	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	565
Eco57I	CTGAAG	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	163
EcoT22I	ATGCAT	2 cut(s)	304, 421
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	163
Esp3I	CGTCTC	1 cut(s)	315
FaeI	CATG	3 cut(s)	167, 195, 423
FalI	AAGNNNNNCTT	4 cut(s)	493, 525, 720, 752
FatI	CATG	3 cut(s)	163, 191, 419
FauNDI	CATATG	2 cut(s)	179, 304
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	3 cut(s)	336, 375, 378
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	3 cut(s)	336, 375, 378
FspBI	CTAG	1 cut(s)	441
GluI	GCNGC	3 cut(s)	336, 375, 378
GsaI	CCCAGC	1 cut(s)	96
GsuI	CTGGAG	1 cut(s)	729
HaeIII	GGCC	2 cut(s)	5, 61
HapII	CCGG	2 cut(s)	351, 393
Hin1II	CATG	3 cut(s)	167, 195, 423
HindIII	AAGCTT	1 cut(s)	734
HinfI	GANTC	4 cut(s)	124, 221, 314, 553
HpaII	CCGG	2 cut(s)	351, 393
HphI	GGTGA	3 cut(s)	407, 662, 677
Hpy166II	GTNNAC	3 cut(s)	73, 117, 137
Hpy188I	TCNGA	3 cut(s)	211, 565, 761
Hpy188III	TCNNGA	3 cut(s)	244, 253, 318
Hpy8I	GTNNAC	3 cut(s)	73, 117, 137
Hpy99I	CGWCG	1 cut(s)	277
HpyAV	CCTTC	4 cut(s)	301, 391, 452, 722
HpyCH4III	ACNGT	3 cut(s)	67, 361, 389
HpyCH4IV	ACGT	4 cut(s)	75, 275, 399, 519
HpyCH4V	TGCA	9 cut(s)	117, 154, 233, 302, 308, 338, 348, 374, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	4 cut(s)	210, 424, 557, 737
HpySE526I	ACGT	4 cut(s)	75, 275, 399, 519
Hsp92II	CATG	3 cut(s)	167, 195, 423
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	4 cut(s)	174, 203, 283, 467
LmnI	GCTCC	3 cut(s)	188, 588, 697
LpnPI	CCDG	8 cut(s)	19, 78, 294, 364, 406, 456, 693, 701
Lsp1109I	GCAGC	3 cut(s)	322, 386, 389
LweI	GCATC	3 cut(s)	168, 237, 289
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	4 cut(s)	75, 275, 399, 519
MaeIII	GTNAC	3 cut(s)	395, 542, 650
MalI	GATC	4 cut(s)	176, 205, 285, 469
MboI	GATC	4 cut(s)	174, 203, 283, 467
MboII	GAAGA	8 cut(s)	40, 198, 211, 230, 286, 424, 524, 667
MflI	RGATCY	2 cut(s)	203, 467
MhlI	GDGCHC	2 cut(s)	99, 119
MluCI	AATT	1 cut(s)	104
MlyI	GAGTC	1 cut(s)	118
MnlI	CCTC	2 cut(s)	693, 704
Mph1103I	ATGCAT	2 cut(s)	304, 421
MseI	TTAA	1 cut(s)	615
MslI	CAYNNNNRTG	1 cut(s)	78
MspA1I	CMGCKG	1 cut(s)	707
MspI	CCGG	2 cut(s)	351, 393
MwoI	GCNNNNNNNGC	1 cut(s)	425
NcoI	CCATGG	1 cut(s)	163
NdeI	CATATG	2 cut(s)	179, 304
NdeII	GATC	4 cut(s)	174, 203, 283, 467
NlaIII	CATG	3 cut(s)	167, 195, 423
NlaIV	GGNNCC	1 cut(s)	391
NmuCI	GTSAC	2 cut(s)	395, 650
NsiI	ATGCAT	2 cut(s)	304, 421
NspI	RCATGY	1 cut(s)	423
PaeI	GCATGC	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	251
PfeI	GAWTC	3 cut(s)	221, 314, 553
PflFI	GACNNNGTC	1 cut(s)	359
PflMI	CCANNNNNTGG	2 cut(s)	454, 694
PkrI	GCNGC	3 cut(s)	337, 376, 379
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Ppu21I	YACGTR	1 cut(s)	520
PshAI	GACNNNNGTC	1 cut(s)	278
PspFI	CCCAGC	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	391
PspPI	GGNCC	1 cut(s)	565
PsuI	RGATCY	2 cut(s)	203, 467
PsyI	GACNNNGTC	1 cut(s)	359
PvuII	CAGCTG	1 cut(s)	707
RsaI	GTAC	3 cut(s)	15, 72, 138
RsaNI	GTAC	3 cut(s)	14, 71, 137
RseI	CAYNNNNRTG	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	615
SatI	GCNGC	3 cut(s)	336, 375, 378
Sau3AI	GATC	4 cut(s)	174, 203, 283, 467
Sau96I	GGNCC	1 cut(s)	565
SchI	GAGTC	1 cut(s)	118
SduI	GDGCHC	2 cut(s)	99, 119
SfaNI	GCATC	3 cut(s)	168, 237, 289
SgrAI	CRCCGGYG	1 cut(s)	350
SinI	GGWCC	1 cut(s)	565
SmiMI	CAYNNNNRTG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
SphI	GCATGC	1 cut(s)	423
Sse9I	AATT	1 cut(s)	104
SspI	AATATT	1 cut(s)	539
SspMI	CTAG	1 cut(s)	441
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	3 cut(s)	67, 361, 389
TaiI	ACGT	4 cut(s)	78, 278, 402, 522
TaqI	TCGA	5 cut(s)	245, 254, 282, 297, 609
TasI	AATT	1 cut(s)	104
TatI	WGTACW	2 cut(s)	70, 136
TfiI	GAWTC	3 cut(s)	221, 314, 553
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TscAI	CASTG	1 cut(s)	585
TseFI	GTSAC	2 cut(s)	395, 650
TseI	GCWGC	3 cut(s)	335, 374, 377
Tsp45I	GTSAC	2 cut(s)	395, 650
TspDTI	ATGAA	4 cut(s)	96, 213, 672, 741
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	1 cut(s)	585
Tth111I	GACNNNGTC	1 cut(s)	359
Van91I	CCANNNNNTGG	2 cut(s)	454, 694
VneI	GTGCAC	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	565
XceI	RCATGY	1 cut(s)	423
XspI	CTAG	1 cut(s)	441
Zsp2I	ATGCAT	2 cut(s)	304, 421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.