Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010209.1

Orthogroup ID

OG0002563

Physical Location & Seq

Genomic Coordinates Forward (+)

10847 .. 12833

Gene Structure 1987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010209.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

atgagaaaaaagcaacctgtgtcgtttgcacagaaatttccaaatgctgatcctttagcactacggcttttgcaaagattgcttgccttcgatcctaaggaccgaccaactgccgaagaggcactggctgatccttattttaagggactctcaaaaatagagagggagccttcatgccagccaattacgaagatggagtttgaatttgagaggagaagggtcacaaaggaggatatacgggagcttatttttcgggaaatattggagtaccatcctcaattgcttaaagactacataaatggaaccgaaaggactaattttctctatccaagtgctgttgatcaattccggaagcagtttgcacatctggaggaaaatagtggtaaaagtgccccagttattccacttgaacgaaagcatgtatctcttcctaggtctacaattgtacattcaaatacggttccccctaaggaacaacaaaattatgcatacttgaaagatcagaaacacgctgaggaggcatacaagaattcaagggatacagaaggaatacatgtaaatctatcacgaaccatgcaagcaccacaaagaattcccttagctaaacccggtagagttgttggtcctgttgtaccatatgagaatggaaatattgtcaaagatgcttatgaccgaaggacgcttattagaagtacagtactgccccctcaggctgttcctccgtcttattgttaccggaaacccagtggtggaagtcaagaaaggtctgcagtggaagtgaatagagacttttcctcgcagtccaagcaagctgcacagtgtggcatggcaacaaaagtagcaccggatgtagcaatcaacattgacacaaacccattttttatgacacgggtgggagtcaacaaggtggaacatgatgaccgaattgctattgacacaaacttcttgcagtcaaaggttccatatggtgggattggtactgctgctgccactgcagctgcccaccgcaaggttggaactgttcagtttggcatgtcaaggatgtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

349

Amino Acids

39.5

Weight (kDa)

9.49

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53510 AT3G14720 AT3G14720 AT3G14720
fragaria_vesca	FvH4_3g17440 FvH4_3g17440 FvH4_3g17440 FvH4_6g38240 FvH4_6g38240 FvH4_6g38240 FvH4_6g38240 FvH4_6g38240
malus_domestica	MD03G1251600.v1.1 MD09G1151800.v1.1 MD11G1272700.v1.1 MD17G1139400.v1.1
prunus_persica	Prupe.3G172800_v2.0.a1 Prupe.3G172800_v2.0.a1 Prupe.4G154700_v2.0.a1
pyrus_communis	pycom03g19900
rosa_chinensis	RchiOBHm_Chr2g0151501 RchiOBHm_Chr5g0028971
rosa_laevigata	RLG00000020555 RLG00000033132
rosa_multiflora	Rmu_sc0000940.1_g000020 Rmu_sc0010209.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050920 Rroxscaffold_2G00096400
rosa_rugosa	Rorug02G0426600 Rorug05G0112100
rosa_samantha	Rh2AG487400 Rh2BG499800 Rh2CG473800 Rh2DG511000 Rh5AG204100 Rh5BG202400 Rh5CG223200 Rh5DG206200
rosa_wichuraiana	Rw2G039950 Rw5G018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	968
AccI	GTMKAC	1 cut(s)	437
AccIII	TCCGGA	1 cut(s)	348
AciI	CCGC	1 cut(s)	1006
AclWI	GGATC	3 cut(s)	44, 86, 125
AcsI	RAATTY	4 cut(s)	35, 203, 529, 591
AdeI	CACNNNGTG	1 cut(s)	821
AfaI	GTAC	7 cut(s)	269, 447, 633, 694, 699, 979, 1046
AfiI	CCNNNNNNNGG	3 cut(s)	749, 968, 1009
AflIII	ACRYGT	1 cut(s)	553
AgsI	TTSAA	5 cut(s)	203, 410, 453, 496, 534
AluBI	AGCT	4 cut(s)	244, 602, 812, 998
AluI	AGCT	4 cut(s)	244, 602, 812, 998
Alw26I	GTCTC	1 cut(s)	780
AlwI	GGATC	3 cut(s)	44, 86, 125
Aor13HI	TCCGGA	1 cut(s)	348
ApeKI	GCWGC	5 cut(s)	812, 983, 986, 995, 998
ApoI	RAATTY	4 cut(s)	35, 203, 529, 591
AspA2I	CCTAGG	1 cut(s)	431
AspS9I	GGNCC	2 cut(s)	100, 623
AsuC2I	CCSGG	1 cut(s)	609
AvaII	GGWCC	2 cut(s)	100, 623
AvrII	CCTAGG	1 cut(s)	431
AxyI	CCTNAGG	3 cut(s)	96, 468, 708
BaeGI	GKGCMC	1 cut(s)	394
BbvCI	CCTCAGC	1 cut(s)	513
BbvI	GCAGC	5 cut(s)	799, 970, 973, 985, 1007
BccI	CCATC	2 cut(s)	187, 279
BceAI	ACGGC	1 cut(s)	80
BciVI	GTATCC	1 cut(s)	532
BclI	TGATCA	1 cut(s)	340
BcnI	CCSGG	1 cut(s)	609
BcoDI	GTCTC	1 cut(s)	780
BfaI	CTAG	2 cut(s)	432, 1048
BfmI	CTRYAG	2 cut(s)	768, 993
BfuI	GTATCC	1 cut(s)	532
BglI	GCCNNNNNGGC	1 cut(s)	119
BisI	GCNGC	5 cut(s)	813, 984, 987, 996, 999
BlnI	CCTAGG	1 cut(s)	431
BlsI	GCNGC	5 cut(s)	814, 985, 988, 997, 1000
BmcAI	AGTACT	1 cut(s)	699
Bme1390I	CCNGG	1 cut(s)	609
Bme18I	GGWCC	2 cut(s)	100, 623
BmgT120I	GGNCC	2 cut(s)	100, 623
BmiI	GGNNCC	4 cut(s)	168, 304, 462, 960
BmrFI	CCNGG	1 cut(s)	609
BmrI	ACTGGG	2 cut(s)	389, 738
BmsI	GCATC	1 cut(s)	652
BmuI	ACTGGG	2 cut(s)	389, 738
BpmI	CTGGAG	1 cut(s)	389
Bpu10I	CCTNAGC	2 cut(s)	513, 598
BpuMI	CCSGG	1 cut(s)	609
BsaJI	CCNNGG	1 cut(s)	431
BsaWI	WCCGGW	3 cut(s)	348, 735, 844
Bsc4I	CCNNNNNNNGG	3 cut(s)	749, 968, 1009
Bse1I	ACTGG	3 cut(s)	129, 395, 744
Bse21I	CCTNAGG	3 cut(s)	96, 468, 708
BseAI	TCCGGA	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	3 cut(s)	271, 853, 1047
BseLI	CCNNNNNNNGG	3 cut(s)	749, 968, 1009
BseMII	CTCAG	2 cut(s)	504, 722
BseNI	ACTGG	3 cut(s)	129, 395, 744
BseRI	GAGGAG	2 cut(s)	226, 530
BseSI	GKGCMC	1 cut(s)	394
BseXI	GCAGC	5 cut(s)	799, 970, 973, 985, 1007
BsgI	GTGCAG	1 cut(s)	798
BsiSI	CCGG	4 cut(s)	349, 609, 736, 845
BslFI	GGGAC	1 cut(s)	159
BslI	CCNNNNNNNGG	3 cut(s)	749, 968, 1009
BsmAI	GTCTC	1 cut(s)	780
BsmFI	GGGAC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp13I	TCCGGA	1 cut(s)	348
Bsp1407I	TGTACA	1 cut(s)	445
Bsp143I	GATC	5 cut(s)	49, 91, 130, 340, 499
BspACI	CCGC	1 cut(s)	1006
BspCNI	CTCAG	2 cut(s)	505, 721
BspEI	TCCGGA	1 cut(s)	348
BspLI	GGNNCC	4 cut(s)	168, 304, 462, 960
BspMAI	CTGCAG	2 cut(s)	772, 997
BspPI	GGATC	3 cut(s)	44, 86, 125
BsrGI	TGTACA	1 cut(s)	445
BsrI	ACTGG	3 cut(s)	129, 395, 744
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	5 cut(s)	49, 91, 130, 340, 499
BssT1I	CCWWGG	1 cut(s)	431
Bst4CI	ACNGT	4 cut(s)	460, 697, 819, 1021
Bst6I	CTCTTC	2 cut(s)	111, 432
BstAPI	GCANNNNNTGC	1 cut(s)	79
BstAUI	TGTACA	1 cut(s)	445
BstC8I	GCNNGC	4 cut(s)	84, 179, 579, 810
BstDEI	CTNAG	5 cut(s)	96, 468, 513, 598, 708
BstF5I	GGATG	3 cut(s)	271, 853, 1047
BstKTI	GATC	5 cut(s)	52, 94, 133, 343, 502
BstMAI	GTCTC	1 cut(s)	780
BstMBI	GATC	5 cut(s)	49, 91, 130, 340, 499
BstMWI	GCNNNNNNNGC	6 cut(s)	79, 119, 518, 805, 992, 995
BstNSI	RCATGY	3 cut(s)	422, 557, 1036
BstSCI	CCNGG	1 cut(s)	607
BstSFI	CTRYAG	2 cut(s)	768, 993
BstSLI	GKGCMC	1 cut(s)	394
BstV1I	GCAGC	5 cut(s)	799, 970, 973, 985, 1007
Bsu36I	CCTNAGG	3 cut(s)	96, 468, 708
BsuI	GTATCC	1 cut(s)	532
BtsCI	GGATG	3 cut(s)	271, 853, 1047
BtsI	GCAGTG	2 cut(s)	777, 990
BtsIMutI	CAGTG	5 cut(s)	122, 751, 777, 824, 990
Cac8I	GCNNGC	4 cut(s)	84, 179, 579, 810
Cfr13I	GGNCC	2 cut(s)	100, 623
CseI	GACGC	1 cut(s)	688
Csp6I	GTAC	7 cut(s)	268, 446, 632, 693, 698, 978, 1045
CviAII	CATG	7 cut(s)	174, 419, 554, 574, 826, 914, 1033
CviJI	RGCY	9 cut(s)	67, 128, 169, 181, 244, 602, 713, 812, 998
CviKI_1	RGCY	9 cut(s)	67, 128, 169, 181, 244, 602, 713, 812, 998
CviQI	GTAC	7 cut(s)	268, 446, 632, 693, 698, 978, 1045
DdeI	CTNAG	5 cut(s)	96, 468, 513, 598, 708
DpnI	GATC	5 cut(s)	51, 93, 132, 342, 501
DpnII	GATC	5 cut(s)	49, 91, 130, 340, 499
DraIII	CACNNNGTG	1 cut(s)	821
Eam1104I	CTCTTC	2 cut(s)	111, 432
EarI	CTCTTC	2 cut(s)	111, 432
Eco130I	CCWWGG	1 cut(s)	431
Eco47I	GGWCC	2 cut(s)	100, 623
Eco81I	CCTNAGG	3 cut(s)	96, 468, 708
EcoRI	GAATTC	2 cut(s)	529, 591
EcoT14I	CCWWGG	1 cut(s)	431
EcoT22I	ATGCAT	1 cut(s)	490
ErhI	CCWWGG	1 cut(s)	431
FaeI	CATG	7 cut(s)	177, 422, 557, 577, 829, 917, 1036
FaqI	GGGAC	1 cut(s)	159
FatI	CATG	7 cut(s)	173, 418, 553, 573, 825, 913, 1032
FauNDI	CATATG	2 cut(s)	637, 964
FbaI	TGATCA	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	437
Fnu4HI	GCNGC	5 cut(s)	813, 984, 987, 996, 999
FokI	GGATG	2 cut(s)	258, 860
Fsp4HI	GCNGC	5 cut(s)	813, 984, 987, 996, 999
FspBI	CTAG	2 cut(s)	432, 1048
GluI	GCNGC	5 cut(s)	813, 984, 987, 996, 999
GsuI	CTGGAG	1 cut(s)	389
HapII	CCGG	4 cut(s)	349, 609, 736, 845
HgaI	GACGC	1 cut(s)	688
Hin1II	CATG	7 cut(s)	177, 422, 557, 577, 829, 917, 1036
HincII	GTYRAC	1 cut(s)	901
HindII	GTYRAC	1 cut(s)	901
HinfI	GANTC	2 cut(s)	147, 897
HpaII	CCGG	4 cut(s)	349, 609, 736, 845
Hpy166II	GTNNAC	2 cut(s)	438, 901
Hpy188I	TCNGA	1 cut(s)	504
Hpy188III	TCNNGA	5 cut(s)	254, 349, 368, 567, 758
Hpy8I	GTNNAC	2 cut(s)	438, 901
HpyAV	CCTTC	5 cut(s)	97, 180, 210, 539, 669
HpyCH4III	ACNGT	4 cut(s)	460, 697, 819, 1021
HpyCH4V	TGCA	9 cut(s)	29, 73, 362, 488, 577, 770, 815, 949, 995
HpyF10VI	GCNNNNNNNGC	6 cut(s)	79, 119, 518, 805, 992, 995
HpyF3I	CTNAG	5 cut(s)	96, 468, 513, 598, 708
Hsp92II	CATG	7 cut(s)	177, 422, 557, 577, 829, 917, 1036
Kpn2I	TCCGGA	1 cut(s)	348
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	5 cut(s)	49, 91, 130, 340, 499
LmnI	GCTCC	2 cut(s)	166, 241
Lsp1109I	GCAGC	5 cut(s)	799, 970, 973, 985, 1007
LweI	GCATC	1 cut(s)	652
MaeI	CTAG	2 cut(s)	432, 1048
MaeIII	GTNAC	2 cut(s)	220, 731
MalI	GATC	5 cut(s)	51, 93, 132, 342, 501
MboI	GATC	5 cut(s)	49, 91, 130, 340, 499
MboII	GAAGA	3 cut(s)	128, 202, 419
MfeI	CAATTG	2 cut(s)	278, 441
MhlI	GDGCHC	1 cut(s)	394
MlyI	GAGTC	2 cut(s)	141, 906
MmeI	TCCRAC	1 cut(s)	994
Mph1103I	ATGCAT	1 cut(s)	490
MroI	TCCGGA	1 cut(s)	348
MseI	TTAA	2 cut(s)	141, 285
MspA1I	CMGCKG	1 cut(s)	998
MspI	CCGG	4 cut(s)	349, 609, 736, 845
MspR9I	CCNGG	1 cut(s)	609
MunI	CAATTG	2 cut(s)	278, 441
MwoI	GCNNNNNNNGC	6 cut(s)	79, 119, 518, 805, 992, 995
NciI	CCSGG	1 cut(s)	609
NdeI	CATATG	2 cut(s)	637, 964
NdeII	GATC	5 cut(s)	49, 91, 130, 340, 499
NlaIII	CATG	7 cut(s)	177, 422, 557, 577, 829, 917, 1036
NlaIV	GGNNCC	4 cut(s)	168, 304, 462, 960
NmuCI	GTSAC	1 cut(s)	220
NsiI	ATGCAT	1 cut(s)	490
NspI	RCATGY	3 cut(s)	422, 557, 1036
PciI	ACATGT	1 cut(s)	553
PflMI	CCANNNNNTGG	1 cut(s)	968
PkrI	GCNGC	5 cut(s)	814, 985, 988, 997, 1000
PleI	GAGTC	2 cut(s)	141, 905
PpsI	GAGTC	2 cut(s)	141, 905
PscI	ACATGT	1 cut(s)	553
PspN4I	GGNNCC	4 cut(s)	168, 304, 462, 960
PspPI	GGNCC	2 cut(s)	100, 623
PstI	CTGCAG	2 cut(s)	772, 997
PvuII	CAGCTG	1 cut(s)	998
RsaI	GTAC	7 cut(s)	269, 447, 633, 694, 699, 979, 1046
RsaNI	GTAC	7 cut(s)	268, 446, 632, 693, 698, 978, 1045
SaqAI	TTAA	2 cut(s)	141, 285
SatI	GCNGC	5 cut(s)	813, 984, 987, 996, 999
Sau3AI	GATC	5 cut(s)	49, 91, 130, 340, 499
Sau96I	GGNCC	2 cut(s)	100, 623
ScaI	AGTACT	1 cut(s)	699
SchI	GAGTC	2 cut(s)	141, 906
ScrFI	CCNGG	1 cut(s)	609
SduI	GDGCHC	1 cut(s)	394
SfaNI	GCATC	1 cut(s)	652
SfcI	CTRYAG	2 cut(s)	768, 993
SinI	GGWCC	2 cut(s)	100, 623
SsiI	CCGC	1 cut(s)	1006
SspI	AATATT	2 cut(s)	261, 652
SspMI	CTAG	2 cut(s)	432, 1048
StyD4I	CCNGG	1 cut(s)	607
StyI	CCWWGG	1 cut(s)	431
TaaI	ACNGT	4 cut(s)	460, 697, 819, 1021
TaqI	TCGA	1 cut(s)	90
TaqII	GACCGA	3 cut(s)	117, 687, 936
TatI	WGTACW	4 cut(s)	445, 692, 697, 1044
Tru1I	TTAA	2 cut(s)	141, 285
Tru9I	TTAA	2 cut(s)	141, 285
TscAI	CASTG	5 cut(s)	129, 751, 777, 824, 997
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	5 cut(s)	812, 983, 986, 995, 998
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	711
TspRI	CASTG	5 cut(s)	129, 751, 777, 824, 997
Van91I	CCANNNNNTGG	1 cut(s)	968
VpaK11BI	GGWCC	2 cut(s)	100, 623
XapI	RAATTY	4 cut(s)	35, 203, 529, 591
XceI	RCATGY	3 cut(s)	422, 557, 1036
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1010
XmaJI	CCTAGG	1 cut(s)	431
XmiI	GTMKAC	1 cut(s)	437
XspI	CTAG	2 cut(s)	432, 1048
ZrmI	AGTACT	1 cut(s)	699
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.