Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002563

Physical Location & Seq

Genomic Coordinates Reverse (-)

70931844 .. 70934112

Gene Structure 2269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG487400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGCAGTATACACCTGCAATTGATATATGGAGTATAGGCTGCATCTTTGCTGAAGTATTAACTGGAAAGCCCCTCTTTCCTGGAAAGAATGTTGTTCACCAGCTGGATTTGATGACTGATCTGCTTGGAACACCCTCATTGGATACCATATCTCGGGTTCGAAACGATAAGGCAAGGAGATACCTAACAAGTATGAGAAAAAAGCAACCTGTGTCGTTTGCACAGAAATTTCCAAATGCTGATCCTTTAGCACTACGGCTTTTGCAAAGATTGCTTGCCTTCGATCCTAAGGACCGACCAACTGCCGAAGAGGCACTGGCTGATCCTTATTTTAAGGGACTCTCAAAAATAGAGAGGGAGCCTTCATGCCAGCCAATTACGAAGATGGAGTTTGAATTTGAGAGGCGAAGGGTCACAAAGGAGGATATACGGGAGCTTATTTTTCGGGAAATATTGGAGTACCATCCTCAATTGCTTAAAGACTACATAAATGGAACCGAAAGGACTAATTTTCTCTATCCAAGTGCTGTTGATCAATTCCGGAAGCAGTTTGCACATCTGGAGGAAAATAGTGGTAAAAGTGCCCCAGTTATTCCACTTGAACGAAAGCATGTATCTCTTCCTAGGTCTACAATTGTACACTCAAATACGGTGCCCCCTAAGGAACAACAAAATTATGCATACTTGAAAGATCAGAAACACGCTGAGGAGGCATACAAGAATTCAAGGGATACAGAAGGAATACATGTAAATCTATCACGAACCATGCAAGCACCACAAAGAATTCCCTTAGCTAAACCCGGTAGAGTTGTTGGGCCTGTTGTACCATATGAGAATGGAAATATTGTCAAAGATGCTTATGACCGAAGGACGCTTATTAGAAGTACAGTACTGCCCCCTCAGGCTGTTCCTCCGTCTTATTGTTACCGGAAACCCAGTGGTGGAAGTCAAGAAAGGTCTGCAGTGGAAGTGAATAGAGACTTTTCCTCGCAGTCCAAGCAAGCTGCACAGTGTGGCATGGCAACAAAAGTAGCACCGGATGTAGCAATCAACATTGACACAAACCCATTTTTTATGACACGGGTGGGAGTCAGCAAGGTGGAACATGATGACCGAATTGCTATCGACACAAACTTCTTGCAGTCAAAGGTTCCATATGGTGGGATTGGTTCTGCTGCTGCCACTGCAGCTGCCCACCGCAAGGTTGGAACTGTTCAGTTTGGCATGTCAAGGATGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

413

Amino Acids

46.62

Weight (kDa)

9.44

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 111	3.1e-13	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53510 AT3G14720 AT3G14720 AT3G14720
fragaria_vesca	FvH4_3g17440 FvH4_3g17440 FvH4_3g17440 FvH4_6g38240 FvH4_6g38240 FvH4_6g38240 FvH4_6g38240 FvH4_6g38240
malus_domestica	MD03G1251600.v1.1 MD09G1151800.v1.1 MD11G1272700.v1.1 MD17G1139400.v1.1
prunus_persica	Prupe.3G172800_v2.0.a1 Prupe.3G172800_v2.0.a1 Prupe.4G154700_v2.0.a1
pyrus_communis	pycom03g19900
rosa_chinensis	RchiOBHm_Chr2g0151501 RchiOBHm_Chr5g0028971
rosa_laevigata	RLG00000020555 RLG00000033132
rosa_multiflora	Rmu_sc0000940.1_g000020 Rmu_sc0010209.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050920 Rroxscaffold_2G00096400
rosa_rugosa	Rorug02G0426600 Rorug05G0112100
rosa_samantha	Rh2AG487400 Rh2BG499800 Rh2CG473800 Rh2DG511000 Rh5AG204100 Rh5BG202400 Rh5CG223200 Rh5DG206200
rosa_wichuraiana	Rw2G039950 Rw5G018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	22
Acc36I	ACCTGC	1 cut(s)	22
AccB1I	GGYRCC	1 cut(s)	652
AccB7I	CCANNNNNTGG	1 cut(s)	1160
AccI	GTMKAC	2 cut(s)	8, 629
AccIII	TCCGGA	1 cut(s)	540
AciI	CCGC	1 cut(s)	1198
AclWI	GGATC	3 cut(s)	236, 278, 317
AcsI	RAATTY	4 cut(s)	227, 395, 721, 783
AcuI	CTGAAG	1 cut(s)	72
AdeI	CACNNNGTG	1 cut(s)	1013
AfaI	GTAC	6 cut(s)	461, 639, 825, 886, 891, 1238
AfiI	CCNNNNNNNGG	4 cut(s)	153, 941, 1160, 1201
AflIII	ACRYGT	1 cut(s)	745
AgsI	TTSAA	4 cut(s)	395, 602, 688, 726
AjnI	CCWGG	1 cut(s)	79
AluBI	AGCT	5 cut(s)	103, 436, 794, 1004, 1190
AluI	AGCT	5 cut(s)	103, 436, 794, 1004, 1190
Alw26I	GTCTC	1 cut(s)	972
AlwI	GGATC	3 cut(s)	236, 278, 317
Ama87I	CYCGRG	1 cut(s)	153
Aor13HI	TCCGGA	1 cut(s)	540
AoxI	GGCC	1 cut(s)	815
ApeKI	GCWGC	6 cut(s)	39, 1004, 1175, 1178, 1187, 1190
ApoI	RAATTY	4 cut(s)	227, 395, 721, 783
AspA2I	CCTAGG	1 cut(s)	623
AspS9I	GGNCC	2 cut(s)	292, 815
AsuC2I	CCSGG	1 cut(s)	801
AsuHPI	GGTGA	1 cut(s)	89
AsuII	TTCGAA	1 cut(s)	160
AvaI	CYCGRG	1 cut(s)	153
AvaII	GGWCC	1 cut(s)	292
AvrII	CCTAGG	1 cut(s)	623
AxyI	CCTNAGG	3 cut(s)	288, 660, 900
BaeGI	GKGCMC	2 cut(s)	586, 657
BanI	GGYRCC	1 cut(s)	652
BbvCI	CCTCAGC	1 cut(s)	705
BbvI	GCAGC	6 cut(s)	26, 991, 1162, 1165, 1177, 1199
BccI	CCATC	2 cut(s)	379, 471
BceAI	ACGGC	1 cut(s)	272
BciT130I	CCWGG	1 cut(s)	81
BciVI	GTATCC	2 cut(s)	136, 724
BclI	TGATCA	1 cut(s)	532
BcnI	CCSGG	1 cut(s)	801
BcoDI	GTCTC	1 cut(s)	972
BfaI	CTAG	2 cut(s)	624, 1240
BfmI	CTRYAG	2 cut(s)	960, 1185
BfuAI	ACCTGC	1 cut(s)	22
BfuI	GTATCC	2 cut(s)	136, 724
BglI	GCCNNNNNGGC	1 cut(s)	311
BisI	GCNGC	6 cut(s)	40, 1005, 1176, 1179, 1188, 1191
BlnI	CCTAGG	1 cut(s)	623
BlsI	GCNGC	6 cut(s)	41, 1006, 1177, 1180, 1189, 1192
BmcAI	AGTACT	1 cut(s)	891
Bme1390I	CCNGG	2 cut(s)	81, 801
Bme18I	GGWCC	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	153
BmgT120I	GGNCC	2 cut(s)	292, 815
BmiI	GGNNCC	4 cut(s)	360, 496, 654, 1152
BmrFI	CCNGG	2 cut(s)	81, 801
BmrI	ACTGGG	2 cut(s)	581, 930
BmsI	GCATC	2 cut(s)	51, 844
BmuI	ACTGGG	2 cut(s)	581, 930
BpmI	CTGGAG	1 cut(s)	581
Bpu10I	CCTNAGC	2 cut(s)	705, 790
Bpu14I	TTCGAA	1 cut(s)	160
BpuMI	CCSGG	1 cut(s)	801
BsaJI	CCNNGG	1 cut(s)	623
BsaWI	WCCGGW	3 cut(s)	540, 927, 1036
Bsc4I	CCNNNNNNNGG	4 cut(s)	153, 941, 1160, 1201
Bse1I	ACTGG	4 cut(s)	67, 321, 587, 936
Bse21I	CCTNAGG	3 cut(s)	288, 660, 900
BseAI	TCCGGA	1 cut(s)	540
BseBI	CCWGG	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	623
BseGI	GGATG	3 cut(s)	463, 1045, 1239
BseLI	CCNNNNNNNGG	4 cut(s)	153, 941, 1160, 1201
BseMII	CTCAG	2 cut(s)	696, 914
BseNI	ACTGG	4 cut(s)	67, 321, 587, 936
BseRI	GAGGAG	1 cut(s)	722
BseSI	GKGCMC	2 cut(s)	586, 657
BseXI	GCAGC	6 cut(s)	26, 991, 1162, 1165, 1177, 1199
BsgI	GTGCAG	1 cut(s)	990
BshFI	GGCC	1 cut(s)	817
BshNI	GGYRCC	1 cut(s)	652
BsiHKCI	CYCGRG	1 cut(s)	153
BsiSI	CCGG	4 cut(s)	541, 801, 928, 1037
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	4 cut(s)	153, 941, 1160, 1201
BsmAI	GTCTC	1 cut(s)	972
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	1 cut(s)	817
BsoBI	CYCGRG	1 cut(s)	153
Bsp119I	TTCGAA	1 cut(s)	160
Bsp1286I	GDGCHC	2 cut(s)	586, 657
Bsp13I	TCCGGA	1 cut(s)	540
Bsp1407I	TGTACA	1 cut(s)	637
Bsp143I	GATC	6 cut(s)	118, 241, 283, 322, 532, 691
BspACI	CCGC	1 cut(s)	1198
BspANI	GGCC	1 cut(s)	817
BspCNI	CTCAG	2 cut(s)	697, 913
BspEI	TCCGGA	1 cut(s)	540
BspLI	GGNNCC	4 cut(s)	360, 496, 654, 1152
BspMAI	CTGCAG	2 cut(s)	964, 1189
BspMI	ACCTGC	1 cut(s)	22
BspPI	GGATC	3 cut(s)	236, 278, 317
BspT104I	TTCGAA	1 cut(s)	160
BspT107I	GGYRCC	1 cut(s)	652
BsrGI	TGTACA	1 cut(s)	637
BsrI	ACTGG	4 cut(s)	67, 321, 587, 936
BssECI	CCNNGG	1 cut(s)	623
BssMI	GATC	6 cut(s)	118, 241, 283, 322, 532, 691
BssNAI	GTATAC	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	623
Bst1107I	GTATAC	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	4 cut(s)	652, 889, 1011, 1213
Bst6I	CTCTTC	2 cut(s)	303, 624
BstAPI	GCANNNNNTGC	1 cut(s)	271
BstAUI	TGTACA	1 cut(s)	637
BstBI	TTCGAA	1 cut(s)	160
BstC8I	GCNNGC	4 cut(s)	276, 371, 771, 1002
BstDEI	CTNAG	5 cut(s)	288, 660, 705, 790, 900
BstF5I	GGATG	3 cut(s)	463, 1045, 1239
BstKTI	GATC	6 cut(s)	121, 244, 286, 325, 535, 694
BstMAI	GTCTC	1 cut(s)	972
BstMBI	GATC	6 cut(s)	118, 241, 283, 322, 532, 691
BstMWI	GCNNNNNNNGC	6 cut(s)	271, 311, 710, 997, 1184, 1187
BstNI	CCWGG	1 cut(s)	81
BstNSI	RCATGY	3 cut(s)	614, 749, 1228
BstSCI	CCNGG	2 cut(s)	79, 799
BstSFI	CTRYAG	2 cut(s)	960, 1185
BstSLI	GKGCMC	2 cut(s)	586, 657
BstV1I	GCAGC	6 cut(s)	26, 991, 1162, 1165, 1177, 1199
BstZ17I	GTATAC	1 cut(s)	9
Bsu36I	CCTNAGG	3 cut(s)	288, 660, 900
BsuI	GTATCC	2 cut(s)	136, 724
BsuRI	GGCC	1 cut(s)	817
BtsCI	GGATG	3 cut(s)	463, 1045, 1239
BtsI	GCAGTG	2 cut(s)	969, 1182
BtsIMutI	CAGTG	5 cut(s)	314, 943, 969, 1016, 1182
BveI	ACCTGC	1 cut(s)	22
Cac8I	GCNNGC	4 cut(s)	276, 371, 771, 1002
Cfr13I	GGNCC	2 cut(s)	292, 815
CseI	GACGC	1 cut(s)	880
Csp6I	GTAC	6 cut(s)	460, 638, 824, 885, 890, 1237
CviAII	CATG	7 cut(s)	366, 611, 746, 766, 1018, 1106, 1225
CviQI	GTAC	6 cut(s)	460, 638, 824, 885, 890, 1237
DdeI	CTNAG	5 cut(s)	288, 660, 705, 790, 900
DpnI	GATC	6 cut(s)	120, 243, 285, 324, 534, 693
DpnII	GATC	6 cut(s)	118, 241, 283, 322, 532, 691
DraIII	CACNNNGTG	1 cut(s)	1013
Eam1104I	CTCTTC	2 cut(s)	303, 624
EarI	CTCTTC	2 cut(s)	303, 624
Eco130I	CCWWGG	1 cut(s)	623
Eco47I	GGWCC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	72
Eco81I	CCTNAGG	3 cut(s)	288, 660, 900
Eco88I	CYCGRG	1 cut(s)	153
EcoRI	GAATTC	2 cut(s)	721, 783
EcoRII	CCWGG	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	623
EcoT22I	ATGCAT	1 cut(s)	682
ErhI	CCWWGG	1 cut(s)	623
FaeI	CATG	7 cut(s)	369, 614, 749, 769, 1021, 1109, 1228
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	7 cut(s)	365, 610, 745, 765, 1017, 1105, 1224
FauNDI	CATATG	2 cut(s)	829, 1156
FbaI	TGATCA	1 cut(s)	532
FblI	GTMKAC	2 cut(s)	8, 629
Fnu4HI	GCNGC	6 cut(s)	40, 1005, 1176, 1179, 1188, 1191
FokI	GGATG	2 cut(s)	450, 1052
Fsp4HI	GCNGC	6 cut(s)	40, 1005, 1176, 1179, 1188, 1191
FspBI	CTAG	2 cut(s)	624, 1240
GluI	GCNGC	6 cut(s)	40, 1005, 1176, 1179, 1188, 1191
GsuI	CTGGAG	1 cut(s)	581
HaeIII	GGCC	1 cut(s)	817
HapII	CCGG	4 cut(s)	541, 801, 928, 1037
HgaI	GACGC	1 cut(s)	880
Hin1II	CATG	7 cut(s)	369, 614, 749, 769, 1021, 1109, 1228
HinfI	GANTC	2 cut(s)	339, 1089
HpaII	CCGG	4 cut(s)	541, 801, 928, 1037
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	4 cut(s)	9, 97, 630, 640
Hpy188I	TCNGA	1 cut(s)	696
Hpy188III	TCNNGA	5 cut(s)	446, 541, 560, 759, 950
Hpy8I	GTNNAC	4 cut(s)	9, 97, 630, 640
HpyAV	CCTTC	5 cut(s)	289, 372, 402, 731, 861
HpyCH4III	ACNGT	4 cut(s)	652, 889, 1011, 1213
HpyF10VI	GCNNNNNNNGC	6 cut(s)	271, 311, 710, 997, 1184, 1187
HpyF3I	CTNAG	5 cut(s)	288, 660, 705, 790, 900
Hsp92II	CATG	7 cut(s)	369, 614, 749, 769, 1021, 1109, 1228
Kpn2I	TCCGGA	1 cut(s)	540
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	6 cut(s)	118, 241, 283, 322, 532, 691
LmnI	GCTCC	2 cut(s)	358, 433
Lsp1109I	GCAGC	6 cut(s)	26, 991, 1162, 1165, 1177, 1199
LweI	GCATC	2 cut(s)	51, 844
MaeI	CTAG	2 cut(s)	624, 1240
MaeIII	GTNAC	2 cut(s)	412, 923
MalI	GATC	6 cut(s)	120, 243, 285, 324, 534, 693
MboI	GATC	6 cut(s)	118, 241, 283, 322, 532, 691
MboII	GAAGA	3 cut(s)	320, 394, 611
MfeI	CAATTG	3 cut(s)	18, 470, 633
MhlI	GDGCHC	2 cut(s)	586, 657
MlyI	GAGTC	2 cut(s)	333, 1098
MmeI	TCCRAC	1 cut(s)	1186
Mph1103I	ATGCAT	1 cut(s)	682
MroI	TCCGGA	1 cut(s)	540
MseI	TTAA	3 cut(s)	59, 333, 477
MspA1I	CMGCKG	2 cut(s)	103, 1190
MspI	CCGG	4 cut(s)	541, 801, 928, 1037
MspR9I	CCNGG	2 cut(s)	81, 801
MunI	CAATTG	3 cut(s)	18, 470, 633
MvaI	CCWGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	6 cut(s)	271, 311, 710, 997, 1184, 1187
NciI	CCSGG	1 cut(s)	801
NdeI	CATATG	2 cut(s)	829, 1156
NdeII	GATC	6 cut(s)	118, 241, 283, 322, 532, 691
NlaIII	CATG	7 cut(s)	369, 614, 749, 769, 1021, 1109, 1228
NlaIV	GGNNCC	4 cut(s)	360, 496, 654, 1152
NmuCI	GTSAC	1 cut(s)	412
NsiI	ATGCAT	1 cut(s)	682
NspI	RCATGY	3 cut(s)	614, 749, 1228
NspV	TTCGAA	1 cut(s)	160
PaqCI	CACCTGC	1 cut(s)	22
PciI	ACATGT	1 cut(s)	745
PflMI	CCANNNNNTGG	1 cut(s)	1160
PfoI	TCCNGGA	1 cut(s)	79
PkrI	GCNGC	6 cut(s)	41, 1006, 1177, 1180, 1189, 1192
PleI	GAGTC	2 cut(s)	333, 1097
PpsI	GAGTC	2 cut(s)	333, 1097
PscI	ACATGT	1 cut(s)	745
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	4 cut(s)	360, 496, 654, 1152
PspPI	GGNCC	2 cut(s)	292, 815
PstI	CTGCAG	2 cut(s)	964, 1189
PvuII	CAGCTG	2 cut(s)	103, 1190
RsaI	GTAC	6 cut(s)	461, 639, 825, 886, 891, 1238
RsaNI	GTAC	6 cut(s)	460, 638, 824, 885, 890, 1237
SaqAI	TTAA	3 cut(s)	59, 333, 477
SatI	GCNGC	6 cut(s)	40, 1005, 1176, 1179, 1188, 1191
Sau3AI	GATC	6 cut(s)	118, 241, 283, 322, 532, 691
Sau96I	GGNCC	2 cut(s)	292, 815
ScaI	AGTACT	1 cut(s)	891
SchI	GAGTC	2 cut(s)	333, 1098
ScrFI	CCNGG	2 cut(s)	81, 801
SduI	GDGCHC	2 cut(s)	586, 657
SfaNI	GCATC	2 cut(s)	51, 844
SfcI	CTRYAG	2 cut(s)	960, 1185
SfuI	TTCGAA	1 cut(s)	160
SinI	GGWCC	1 cut(s)	292
SsiI	CCGC	1 cut(s)	1198
SspI	AATATT	2 cut(s)	453, 844
SspMI	CTAG	2 cut(s)	624, 1240
StyD4I	CCNGG	2 cut(s)	79, 799
StyI	CCWWGG	1 cut(s)	623
TaaI	ACNGT	4 cut(s)	652, 889, 1011, 1213
TaqI	TCGA	3 cut(s)	160, 282, 1125
TaqII	GACCGA	3 cut(s)	309, 879, 1128
TatI	WGTACW	4 cut(s)	637, 884, 889, 1236
Tru1I	TTAA	3 cut(s)	59, 333, 477
Tru9I	TTAA	3 cut(s)	59, 333, 477
TscAI	CASTG	5 cut(s)	321, 943, 969, 1016, 1189
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	6 cut(s)	39, 1004, 1175, 1178, 1187, 1190
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	1 cut(s)	354
TspGWI	ACGGA	1 cut(s)	903
TspRI	CASTG	5 cut(s)	321, 943, 969, 1016, 1189
Van91I	CCANNNNNTGG	1 cut(s)	1160
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	4 cut(s)	227, 395, 721, 783
XceI	RCATGY	3 cut(s)	614, 749, 1228
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1202
XmaJI	CCTAGG	1 cut(s)	623
XmiI	GTMKAC	2 cut(s)	8, 629
XspI	CTAG	2 cut(s)	624, 1240
ZrmI	AGTACT	1 cut(s)	891
Zsp2I	ATGCAT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.