Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002563

Physical Location & Seq

Genomic Coordinates Reverse (-)

71459329 .. 71464241

Gene Structure 4913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00050920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGCGGAAAAAGCATCCCGTGTCATTTACACAAAAATTTCCCAAGGCAGATCCTTTAGCACTCCGCCTATTGCAAAGGCTACTGGCCTTTGACCCAAAGGATCGACCGACTGCAGAGGAGGCATTGGCGGATCCGTACTTCAAGGGTCTGGCCAGAGTCGAGAGAGAGCTTTCTTGTCAACCTATTTCAAAGCTAGAATTTGAATTTGAAAGGCGAAGAGTGATTAAGGAGGACATTAGGGAACTAATTTACCGGGAAATACTCGAATACCATCCACAACTACTTAAGGATTACATGAACGGAACCGAAGGCACAAGCTTTTTGTATCCAAGTGCTATAGGTCAATTCAGAAAGCAGTTTGCTTATCTTGAGGAACATGGTGGTAAAAGTGGACCGGTCATTCCTCCAGAGAGGAAGCATGTCTCCCTTCCACGATCTACTGTTCACTCAAGTACAATACCCCCTATTGCACAACCAAATTTGCTCTCGTATGAGAACCGGCAGACAGAAGAGGCTTCTAACTGTCTTAGAGTAACAGACACTATTAATGGGAATCCATCAAAGGCCTCACGTCCTCCACCAAGGGTGCCAACAGCAAAACCTGGACGAGTTATTGGACCGGTTCTTCCACATGAGAATGGCAGAAATGCCAAGGAAACCCACGATCCAAGGACGTTCTACAGAAACGCAGTTCTTCCTCAGCAGTCTATCTCTCCACACTGCTTCTTCAGAACTCATACTGCCGGTCAAGAAAAGTCCCTGTTGGAGATGAAGAGGGACGCAGCACATGCTAAACTGCAACCCCATCTTGAACAACGTAACTTGGTGTCGAAACCTATTCCGGGCATGGTCATTGATGTCAACACCAACCCATACCACCCGCCGTCCACCAAGGTAGATCAACTAAATGCAATAGATACGAAGCTGCTGCATGCGCAGTCACAGTTTGGTCCTGTTGGTGCCGCAGCTGTAGCTGTAGCTGCTCACAGGAACACAGGAGCTGTTCACTATGGATTGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

340

Amino Acids

38.2

Weight (kDa)

9.58

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53510 AT3G14720 AT3G14720 AT3G14720
fragaria_vesca	FvH4_3g17440 FvH4_3g17440 FvH4_3g17440 FvH4_6g38240 FvH4_6g38240 FvH4_6g38240 FvH4_6g38240 FvH4_6g38240
malus_domestica	MD03G1251600.v1.1 MD09G1151800.v1.1 MD11G1272700.v1.1 MD17G1139400.v1.1
prunus_persica	Prupe.3G172800_v2.0.a1 Prupe.3G172800_v2.0.a1 Prupe.4G154700_v2.0.a1
pyrus_communis	pycom03g19900
rosa_chinensis	RchiOBHm_Chr2g0151501 RchiOBHm_Chr5g0028971
rosa_laevigata	RLG00000020555 RLG00000033132
rosa_multiflora	Rmu_sc0000940.1_g000020 Rmu_sc0010209.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050920 Rroxscaffold_2G00096400
rosa_rugosa	Rorug02G0426600 Rorug05G0112100
rosa_samantha	Rh2AG487400 Rh2BG499800 Rh2CG473800 Rh2DG511000 Rh5AG204100 Rh5BG202400 Rh5CG223200 Rh5DG206200
rosa_wichuraiana	Rw2G039950 Rw5G018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	936
AccB1I	GGYRCC	2 cut(s)	586, 959
AciI	CCGC	5 cut(s)	4, 64, 128, 881, 963
AclWI	GGATC	5 cut(s)	44, 108, 125, 138, 659
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	4 cut(s)	35, 197, 203, 478
AcuI	CTGAAG	1 cut(s)	712
AfaI	GTAC	2 cut(s)	137, 454
AfiI	CCNNNNNNNGG	1 cut(s)	842
AflII	CTTAAG	1 cut(s)	284
AgeI	ACCGGT	2 cut(s)	394, 619
AgsI	TTSAA	5 cut(s)	142, 189, 203, 209, 812
AjiI	CACGTC	1 cut(s)	572
AjnI	CCWGG	1 cut(s)	601
AluBI	AGCT	8 cut(s)	169, 193, 318, 925, 968, 974, 980, 1001
AluI	AGCT	8 cut(s)	169, 193, 318, 925, 968, 974, 980, 1001
Alw26I	GTCTC	1 cut(s)	427
AlwI	GGATC	5 cut(s)	44, 108, 125, 138, 659
AlwNI	CAGNNNCTG	1 cut(s)	1001
AoxI	GGCC	3 cut(s)	84, 150, 564
ApeKI	GCWGC	5 cut(s)	782, 925, 928, 965, 980
ApoI	RAATTY	4 cut(s)	35, 197, 203, 478
AseI	ATTAAT	1 cut(s)	546
AsiGI	ACCGGT	2 cut(s)	394, 619
AspLEI	GCGC	1 cut(s)	937
AspS9I	GGNCC	3 cut(s)	392, 617, 950
AsuC2I	CCSGG	2 cut(s)	254, 843
AvaII	GGWCC	3 cut(s)	392, 617, 950
BalI	TGGCCA	1 cut(s)	152
BamHI	GGATCC	1 cut(s)	130
BanI	GGYRCC	2 cut(s)	586, 959
BbvCI	CCTCAGC	1 cut(s)	699
BbvI	GCAGC	5 cut(s)	794, 912, 915, 967, 977
BccI	CCATC	3 cut(s)	279, 565, 813
BceAI	ACGGC	1 cut(s)	868
BcgI	CGANNNNNNTGC	2 cut(s)	910, 944
BciT130I	CCWGG	1 cut(s)	603
BciVI	GTATCC	1 cut(s)	336
BcnI	CCSGG	2 cut(s)	254, 843
BcoDI	GTCTC	1 cut(s)	427
BfaI	CTAG	1 cut(s)	194
BfmI	CTRYAG	5 cut(s)	111, 336, 679, 969, 975
BfrI	CTTAAG	1 cut(s)	284
BfuI	GTATCC	1 cut(s)	336
BisI	GCNGC	6 cut(s)	783, 926, 929, 963, 966, 981
BlsI	GCNGC	6 cut(s)	784, 927, 930, 964, 967, 982
Bme1390I	CCNGG	3 cut(s)	254, 603, 843
Bme18I	GGWCC	3 cut(s)	392, 617, 950
BmgBI	CACGTC	1 cut(s)	572
BmgT120I	GGNCC	3 cut(s)	392, 617, 950
BmiI	GGNNCC	4 cut(s)	132, 304, 588, 961
BmrFI	CCNGG	3 cut(s)	254, 603, 843
BmsI	GCATC	1 cut(s)	22
BpmI	CTGGAG	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	699
BpuEI	CTTGAG	2 cut(s)	389, 433
BpuMI	CCSGG	2 cut(s)	254, 843
BsaJI	CCNNGG	5 cut(s)	42, 581, 651, 668, 891
BsaWI	WCCGGW	2 cut(s)	394, 619
Bsc4I	CCNNNNNNNGG	1 cut(s)	842
Bse118I	RCCGGY	4 cut(s)	394, 498, 619, 743
Bse1I	ACTGG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	603
BseDI	CCNNGG	5 cut(s)	42, 581, 651, 668, 891
BseGI	GGATG	2 cut(s)	13, 271
BseLI	CCNNNNNNNGG	1 cut(s)	842
BseMII	CTCAG	1 cut(s)	713
BseNI	ACTGG	1 cut(s)	87
BseRI	GAGGAG	1 cut(s)	131
BseXI	GCAGC	5 cut(s)	794, 912, 915, 967, 977
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	3 cut(s)	86, 152, 566
BshNI	GGYRCC	2 cut(s)	586, 959
BshTI	ACCGGT	2 cut(s)	394, 619
BsiEI	CGRYCG	1 cut(s)	107
BsiSI	CCGG	6 cut(s)	253, 395, 499, 620, 744, 842
BslFI	GGGAC	2 cut(s)	742, 791
BslI	CCNNNNNNNGG	1 cut(s)	842
BsmAI	GTCTC	1 cut(s)	427
BsmFI	GGGAC	2 cut(s)	742, 791
BsnI	GGCC	3 cut(s)	86, 152, 566
Bsp143I	GATC	6 cut(s)	49, 100, 130, 434, 664, 898
BspACI	CCGC	5 cut(s)	4, 64, 128, 881, 963
BspANI	GGCC	3 cut(s)	86, 152, 566
BspCNI	CTCAG	1 cut(s)	712
BspLI	GGNNCC	4 cut(s)	132, 304, 588, 961
BspMAI	CTGCAG	1 cut(s)	115
BspPI	GGATC	5 cut(s)	44, 108, 125, 138, 659
BspT107I	GGYRCC	2 cut(s)	586, 959
BspTI	CTTAAG	1 cut(s)	284
BsrFI	RCCGGY	4 cut(s)	394, 498, 619, 743
BsrI	ACTGG	1 cut(s)	87
BssAI	RCCGGY	4 cut(s)	394, 498, 619, 743
BssECI	CCNNGG	5 cut(s)	42, 581, 651, 668, 891
BssMI	GATC	6 cut(s)	49, 100, 130, 434, 664, 898
BssT1I	CCWWGG	5 cut(s)	42, 581, 651, 668, 891
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	3 cut(s)	442, 524, 945
Bst6I	CTCTTC	3 cut(s)	211, 504, 767
BstAFI	CTTAAG	1 cut(s)	284
BstAPI	GCANNNNNTGC	1 cut(s)	788
BstC8I	GCNNGC	1 cut(s)	933
BstDEI	CTNAG	3 cut(s)	527, 699, 1020
BstF5I	GGATG	2 cut(s)	13, 271
BstHHI	GCGC	1 cut(s)	937
BstKTI	GATC	6 cut(s)	52, 103, 133, 437, 667, 901
BstMAI	GTCTC	1 cut(s)	427
BstMBI	GATC	6 cut(s)	49, 100, 130, 434, 664, 898
BstMCI	CGRYCG	1 cut(s)	107
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 119, 788, 934, 971, 980
BstNI	CCWGG	1 cut(s)	603
BstNSI	RCATGY	3 cut(s)	422, 791, 935
BstSCI	CCNGG	3 cut(s)	252, 601, 841
BstSFI	CTRYAG	5 cut(s)	111, 336, 679, 969, 975
BstV1I	GCAGC	5 cut(s)	794, 912, 915, 967, 977
BstX2I	RGATCY	2 cut(s)	49, 130
BstYI	RGATCY	2 cut(s)	49, 130
BsuI	GTATCC	1 cut(s)	336
BsuRI	GGCC	3 cut(s)	86, 152, 566
BtrI	CACGTC	1 cut(s)	572
BtsCI	GGATG	2 cut(s)	13, 271
BtsI	GCAGTG	1 cut(s)	718
BtsIMutI	CAGTG	1 cut(s)	718
Cac8I	GCNNGC	1 cut(s)	933
CaiI	CAGNNNCTG	1 cut(s)	1001
CfoI	GCGC	1 cut(s)	937
Cfr10I	RCCGGY	4 cut(s)	394, 498, 619, 743
Cfr13I	GGNCC	3 cut(s)	392, 617, 950
CseI	GACGC	1 cut(s)	788
Csp6I	GTAC	2 cut(s)	136, 453
CspAI	ACCGGT	2 cut(s)	394, 619
CviAII	CATG	7 cut(s)	295, 377, 419, 632, 788, 847, 932
CviQI	GTAC	2 cut(s)	136, 453
DdeI	CTNAG	3 cut(s)	527, 699, 1020
DpnI	GATC	6 cut(s)	51, 102, 132, 436, 666, 900
DpnII	GATC	6 cut(s)	49, 100, 130, 434, 664, 898
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	3 cut(s)	211, 504, 767
EarI	CTCTTC	3 cut(s)	211, 504, 767
EciI	GGCGGA	2 cut(s)	53, 143
Eco130I	CCWWGG	5 cut(s)	42, 581, 651, 668, 891
Eco147I	AGGCCT	1 cut(s)	566
Eco47I	GGWCC	3 cut(s)	392, 617, 950
Eco57I	CTGAAG	1 cut(s)	712
EcoRII	CCWGG	1 cut(s)	601
EcoT14I	CCWWGG	5 cut(s)	42, 581, 651, 668, 891
ErhI	CCWWGG	5 cut(s)	42, 581, 651, 668, 891
FaeI	CATG	7 cut(s)	298, 380, 422, 635, 791, 850, 935
FaqI	GGGAC	2 cut(s)	742, 791
FatI	CATG	7 cut(s)	294, 376, 418, 631, 787, 846, 931
FauI	CCCGC	1 cut(s)	888
Fnu4HI	GCNGC	6 cut(s)	783, 926, 929, 963, 966, 981
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	6 cut(s)	783, 926, 929, 963, 966, 981
FspBI	CTAG	1 cut(s)	194
FspI	TGCGCA	1 cut(s)	936
GlaI	GCGC	1 cut(s)	936
GluI	GCNGC	6 cut(s)	783, 926, 929, 963, 966, 981
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	3 cut(s)	86, 152, 566
HapII	CCGG	6 cut(s)	253, 395, 499, 620, 744, 842
HgaI	GACGC	1 cut(s)	788
HhaI	GCGC	1 cut(s)	937
Hin1II	CATG	7 cut(s)	298, 380, 422, 635, 791, 850, 935
Hin6I	GCGC	1 cut(s)	935
HinP1I	GCGC	1 cut(s)	935
HincII	GTYRAC	2 cut(s)	179, 862
HindII	GTYRAC	2 cut(s)	179, 862
HindIII	AAGCTT	1 cut(s)	316
HinfI	GANTC	2 cut(s)	156, 553
HpaII	CCGG	6 cut(s)	253, 395, 499, 620, 744, 842
Hpy166II	GTNNAC	6 cut(s)	179, 392, 445, 862, 888, 1006
Hpy188I	TCNGA	2 cut(s)	350, 731
Hpy188III	TCNNGA	5 cut(s)	160, 368, 407, 749, 809
Hpy8I	GTNNAC	6 cut(s)	179, 392, 445, 862, 888, 1006
HpyAV	CCTTC	2 cut(s)	302, 437
HpyCH4III	ACNGT	3 cut(s)	442, 524, 945
HpyCH4IV	ACGT	3 cut(s)	571, 674, 817
HpyCH4V	TGCA	6 cut(s)	73, 113, 470, 799, 911, 931
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 119, 788, 934, 971, 980
HpyF3I	CTNAG	3 cut(s)	527, 699, 1020
HpySE526I	ACGT	3 cut(s)	571, 674, 817
Hsp92II	CATG	7 cut(s)	298, 380, 422, 635, 791, 850, 935
HspAI	GCGC	1 cut(s)	935
Kzo9I	GATC	6 cut(s)	49, 100, 130, 434, 664, 898
LmnI	GCTCC	1 cut(s)	998
Lsp1109I	GCAGC	5 cut(s)	794, 912, 915, 967, 977
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	194
MaeII	ACGT	3 cut(s)	571, 674, 817
MaeIII	GTNAC	3 cut(s)	532, 818, 939
MalI	GATC	6 cut(s)	51, 102, 132, 436, 666, 900
MboI	GATC	6 cut(s)	49, 100, 130, 434, 664, 898
MboII	GAAGA	6 cut(s)	228, 521, 617, 686, 718, 784
MflI	RGATCY	2 cut(s)	49, 130
MlsI	TGGCCA	1 cut(s)	152
MluCI	AATT	6 cut(s)	35, 197, 203, 246, 344, 478
MluNI	TGGCCA	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	744
Mox20I	TGGCCA	1 cut(s)	152
MscI	TGGCCA	1 cut(s)	152
MseI	TTAA	3 cut(s)	225, 285, 546
MslI	CAYNNNNRTG	1 cut(s)	636
Msp20I	TGGCCA	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	968
MspCI	CTTAAG	1 cut(s)	284
MspI	CCGG	6 cut(s)	253, 395, 499, 620, 744, 842
MspR9I	CCNGG	3 cut(s)	254, 603, 843
MvaI	CCWGG	1 cut(s)	603
MwoI	GCNNNNNNNGC	6 cut(s)	10, 119, 788, 934, 971, 980
NciI	CCSGG	2 cut(s)	254, 843
NdeII	GATC	6 cut(s)	49, 100, 130, 434, 664, 898
NlaIII	CATG	7 cut(s)	298, 380, 422, 635, 791, 850, 935
NlaIV	GGNNCC	4 cut(s)	132, 304, 588, 961
NmuCI	GTSAC	1 cut(s)	939
NsbI	TGCGCA	1 cut(s)	936
NspI	RCATGY	3 cut(s)	422, 791, 935
PaeI	GCATGC	1 cut(s)	935
PceI	AGGCCT	1 cut(s)	566
PfeI	GAWTC	1 cut(s)	553
PinAI	ACCGGT	2 cut(s)	394, 619
PkrI	GCNGC	6 cut(s)	784, 927, 930, 964, 967, 982
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PshBI	ATTAAT	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	601
PspN4I	GGNNCC	4 cut(s)	132, 304, 588, 961
PspPI	GGNCC	3 cut(s)	392, 617, 950
PstI	CTGCAG	1 cut(s)	115
PstNI	CAGNNNCTG	1 cut(s)	1001
PsuI	RGATCY	2 cut(s)	49, 130
PvuII	CAGCTG	1 cut(s)	968
RsaI	GTAC	2 cut(s)	137, 454
RsaNI	GTAC	2 cut(s)	136, 453
RseI	CAYNNNNRTG	1 cut(s)	636
SaqAI	TTAA	3 cut(s)	225, 285, 546
SatI	GCNGC	6 cut(s)	783, 926, 929, 963, 966, 981
Sau3AI	GATC	6 cut(s)	49, 100, 130, 434, 664, 898
Sau96I	GGNCC	3 cut(s)	392, 617, 950
SchI	GAGTC	1 cut(s)	165
ScrFI	CCNGG	3 cut(s)	254, 603, 843
SfaNI	GCATC	1 cut(s)	22
SfcI	CTRYAG	5 cut(s)	111, 336, 679, 969, 975
SinI	GGWCC	3 cut(s)	392, 617, 950
SmiMI	CAYNNNNRTG	1 cut(s)	636
SmlI	CTYRAG	3 cut(s)	284, 368, 448
SmoI	CTYRAG	3 cut(s)	284, 368, 448
SphI	GCATGC	1 cut(s)	935
Sse9I	AATT	6 cut(s)	35, 197, 203, 246, 344, 478
SseBI	AGGCCT	1 cut(s)	566
SsiI	CCGC	5 cut(s)	4, 64, 128, 881, 963
SspMI	CTAG	1 cut(s)	194
StuI	AGGCCT	1 cut(s)	566
StyD4I	CCNGG	3 cut(s)	252, 601, 841
StyI	CCWWGG	5 cut(s)	42, 581, 651, 668, 891
TaaI	ACNGT	3 cut(s)	442, 524, 945
TaiI	ACGT	3 cut(s)	574, 677, 820
TaqI	TCGA	4 cut(s)	103, 159, 264, 830
TaqII	GACCGA	1 cut(s)	121
TasI	AATT	6 cut(s)	35, 197, 203, 246, 344, 478
TatI	WGTACW	1 cut(s)	452
TauI	GCSGC	1 cut(s)	965
TfiI	GAWTC	1 cut(s)	553
Tru1I	TTAA	3 cut(s)	225, 285, 546
Tru9I	TTAA	3 cut(s)	225, 285, 546
TscAI	CASTG	1 cut(s)	725
TseFI	GTSAC	1 cut(s)	939
TseI	GCWGC	5 cut(s)	782, 925, 928, 965, 980
Tsp45I	GTSAC	1 cut(s)	939
TspDTI	ATGAA	2 cut(s)	311, 785
TspGWI	ACGGA	2 cut(s)	123, 315
TspRI	CASTG	1 cut(s)	725
Vha464I	CTTAAG	1 cut(s)	284
VpaK11BI	GGWCC	3 cut(s)	392, 617, 950
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	4 cut(s)	35, 197, 203, 478
XceI	RCATGY	3 cut(s)	422, 791, 935
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.