Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006473

Physical Location & Seq

Genomic Coordinates Forward (+)

22055688 .. 22057221

Gene Structure 1534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g21850.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGGCGAGAATGATGGAATATGGGCATGGACTCGGTTCAATCAACTTTTCAACTATCTCCCACTTGCTGCTCTAATTGAAAAGAAAATTATCTGTATGCATGGAGGCATTGGGAGATCCATCAATTCTTTAGAACAGATAGAGAAGCTTGAAAGACCCATTACAATGGATGCTGGGTCTATAGTTTTAATGGATCTTTTGTGGTCTGATCCCACAGAAAATGATAGTGTAGAGGGCTTGAGACCGAATGCCAGAGGGCCTGGTCTTGTCACCTTTGGGCCTGATCGTGTCACGGAATTCTGTAAGAGAAACAAATTACAACTCATTATACGAGCTCATGAATGCGTCATGGATGGATTTGAAAGATTTGCCCAGGGACAGTTGATCACTCTTTTCTCTGCAACCAACTATTGCGGGACAGCAAACAATGCTGGTGCTATACTGGTTGTTGGCAGAGGTTTGGTTGTGGTTCCGAAATTAATCCATCCTTTGCCACCTCCTCTTCAGTCACCGGAGACATCTCCTGAACGGGTCATAGACGACACATGGATGCAGGAGCTCAACATTCAAAGACCACCAACACCTACTCGTGGCCGACCACAGCCTGATCTTGATCGAAACTCACTTGCATATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_3 Kelch_4 Metallophos STPPase_N

Protein Analysis

213

Amino Acids

23.66

Weight (kDa)

5.66

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03080
fragaria_vesca	FvH4_2g24460 FvH4_2g24460 FvH4_2g24460 FvH4_2g24460
malus_domestica	MD03G1274100.v1.1 MD11G1296400.v1.1
prunus_persica	Prupe.8G250300_v2.0.a1 Prupe.8G268100_v2.0.a1 Prupe.8G268200_v2.0.a1
pyrus_communis	pycom03g21840 pycom03g21850 pycom11g26080
rosa_chinensis	RchiOBHm_Chr6g0292301
rosa_laevigata	RLG00000012044
rosa_multiflora	Rmu_co8058994.1_g000001 Rmu_co8428867.1_g000001 Rmu_sc0002993.1_g000020 Rmu_sc0011960.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175230
rosa_rugosa	Rorug06G0225300
rosa_samantha	Rh6AG338700 Rh6BG345800 Rh6CG352900 Rh6DG338700
rosa_wichuraiana	Rw6G029480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	414
AclWI	GGATC	3 cut(s)	111, 201, 203
AcoI	YGGCCR	1 cut(s)	592
AcsI	RAATTY	1 cut(s)	296
AcuI	CTGAAG	1 cut(s)	488
AfiI	CCNNNNNNNGG	1 cut(s)	590
AgsI	TTSAA	6 cut(s)	40, 52, 80, 152, 362, 569
AjnI	CCWGG	2 cut(s)	259, 372
AluBI	AGCT	3 cut(s)	148, 335, 559
AluI	AGCT	3 cut(s)	148, 335, 559
Alw21I	GWGCWC	2 cut(s)	337, 561
Alw26I	GTCTC	2 cut(s)	235, 509
AlwI	GGATC	3 cut(s)	111, 201, 203
AoxI	GGCC	3 cut(s)	257, 278, 592
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	296
AseI	ATTAAT	1 cut(s)	479
AspS9I	GGNCC	2 cut(s)	257, 278
AsuHPI	GGTGA	2 cut(s)	262, 501
BanII	GRGCYC	2 cut(s)	337, 561
BauI	CACGAG	1 cut(s)	588
Bbv12I	GWGCWC	2 cut(s)	337, 561
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	4 cut(s)	8, 128, 347, 492
BciT130I	CCWGG	2 cut(s)	261, 374
BclI	TGATCA	1 cut(s)	384
BcoDI	GTCTC	2 cut(s)	235, 509
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme1390I	CCNGG	2 cut(s)	261, 374
BmgT120I	GGNCC	2 cut(s)	257, 278
BmiI	GGNNCC	1 cut(s)	471
BmrFI	CCNGG	2 cut(s)	261, 374
BmsI	GCATC	2 cut(s)	160, 540
BpuEI	CTTGAG	1 cut(s)	259
BsaBI	GATNNNNATC	1 cut(s)	612
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	2 cut(s)	372, 373
BsaWI	WCCGGW	1 cut(s)	511
Bsc4I	CCNNNNNNNGG	1 cut(s)	590
Bse1I	ACTGG	1 cut(s)	447
Bse8I	GATNNNNATC	1 cut(s)	612
BseBI	CCWGG	2 cut(s)	261, 374
BseDI	CCNNGG	2 cut(s)	372, 373
BseGI	GGATG	4 cut(s)	175, 358, 484, 555
BseJI	GATNNNNATC	1 cut(s)	612
BseLI	CCNNNNNNNGG	1 cut(s)	590
BseNI	ACTGG	1 cut(s)	447
BseRI	GAGGAG	1 cut(s)	489
BseXI	GCAGC	1 cut(s)	55
BseYI	CCCAGC	1 cut(s)	173
BshFI	GGCC	3 cut(s)	259, 280, 594
BsiHKAI	GWGCWC	2 cut(s)	337, 561
BsiSI	CCGG	1 cut(s)	512
BslFI	GGGAC	2 cut(s)	390, 430
BslI	CCNNNNNNNGG	1 cut(s)	590
BsmAI	GTCTC	2 cut(s)	235, 509
BsmFI	GGGAC	2 cut(s)	390, 430
BsmI	GAATGC	2 cut(s)	253, 347
BsnI	GGCC	3 cut(s)	259, 280, 594
Bso31I	GGTCTC	1 cut(s)	235
Bsp1286I	GDGCHC	2 cut(s)	337, 561
Bsp143I	GATC	7 cut(s)	116, 193, 208, 283, 384, 607, 613
BspACI	CCGC	1 cut(s)	414
BspANI	GGCC	3 cut(s)	259, 280, 594
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	471
BspPI	GGATC	3 cut(s)	111, 201, 203
BspTNI	GGTCTC	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	447
BssECI	CCNNGG	2 cut(s)	372, 373
BssMI	GATC	7 cut(s)	116, 193, 208, 283, 384, 607, 613
BssSI	CACGAG	1 cut(s)	588
Bst2BI	CACGAG	1 cut(s)	588
Bst2UI	CCWGG	2 cut(s)	261, 374
Bst4CI	ACNGT	1 cut(s)	381
Bst6I	CTCTTC	1 cut(s)	507
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstF5I	GGATG	4 cut(s)	175, 358, 484, 555
BstKTI	GATC	7 cut(s)	119, 196, 211, 286, 387, 610, 616
BstMAI	GTCTC	2 cut(s)	235, 509
BstMBI	GATC	7 cut(s)	116, 193, 208, 283, 384, 607, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	428
BstNI	CCWGG	2 cut(s)	261, 374
BstSCI	CCNGG	2 cut(s)	259, 372
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	55
BstX2I	RGATCY	2 cut(s)	116, 193
BstXI	CCANNNNNNTGG	1 cut(s)	166
BstYI	RGATCY	2 cut(s)	116, 193
BsuRI	GGCC	3 cut(s)	259, 280, 594
BtsCI	GGATG	4 cut(s)	175, 358, 484, 555
CciI	TCATGA	1 cut(s)	337
Cfr13I	GGNCC	2 cut(s)	257, 278
CseI	GACGC	1 cut(s)	334
CviAII	CATG	5 cut(s)	27, 101, 338, 349, 546
CviJI	RGCY	8 cut(s)	148, 237, 259, 280, 335, 559, 594, 604
CviKI_1	RGCY	8 cut(s)	148, 237, 259, 280, 335, 559, 594, 604
DpnI	GATC	7 cut(s)	118, 195, 210, 285, 386, 609, 615
DpnII	GATC	7 cut(s)	116, 193, 208, 283, 384, 607, 613
EaeI	YGGCCR	1 cut(s)	592
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Ecl136II	GAGCTC	2 cut(s)	335, 559
Eco24I	GRGCYC	2 cut(s)	337, 561
Eco31I	GGTCTC	1 cut(s)	235
Eco53kI	GAGCTC	2 cut(s)	335, 559
Eco57I	CTGAAG	1 cut(s)	488
EcoICRI	GAGCTC	2 cut(s)	335, 559
EcoO109I	RGGNCCY	1 cut(s)	257
EcoRI	GAATTC	1 cut(s)	296
EcoRII	CCWGG	2 cut(s)	259, 372
EcoT22I	ATGCAT	1 cut(s)	102
EcoT38I	GRGCYC	2 cut(s)	337, 561
FaeI	CATG	5 cut(s)	30, 104, 341, 352, 549
FaqI	GGGAC	2 cut(s)	390, 430
FatI	CATG	5 cut(s)	26, 100, 337, 348, 545
FauI	CCCGC	1 cut(s)	407
FbaI	TGATCA	1 cut(s)	384
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	4 cut(s)	182, 365, 471, 562
FriOI	GRGCYC	2 cut(s)	337, 561
Fsp4HI	GCNGC	1 cut(s)	69
GluI	GCNGC	1 cut(s)	69
GsaI	CCCAGC	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	259, 280, 594
HapII	CCGG	1 cut(s)	512
HgaI	GACGC	1 cut(s)	334
Hin1II	CATG	5 cut(s)	30, 104, 341, 352, 549
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	1 cut(s)	512
HphI	GGTGA	2 cut(s)	262, 501
Hpy188I	TCNGA	2 cut(s)	208, 474
Hpy188III	TCNNGA	3 cut(s)	338, 524, 611
HpyCH4III	ACNGT	1 cut(s)	381
HpyCH4V	TGCA	4 cut(s)	100, 401, 553, 629
HpyF10VI	GCNNNNNNNGC	1 cut(s)	428
Hsp92II	CATG	5 cut(s)	30, 104, 341, 352, 549
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	7 cut(s)	116, 193, 208, 283, 384, 607, 613
LmnI	GCTCC	1 cut(s)	556
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	2 cut(s)	160, 540
MaeIII	GTNAC	3 cut(s)	268, 289, 507
MalI	GATC	7 cut(s)	118, 195, 210, 285, 386, 609, 615
MboI	GATC	7 cut(s)	116, 193, 208, 283, 384, 607, 613
MboII	GAAGA	1 cut(s)	494
MflI	RGATCY	2 cut(s)	116, 193
MhlI	GDGCHC	2 cut(s)	337, 561
MluCI	AATT	6 cut(s)	75, 87, 124, 296, 314, 476
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	6 cut(s)	98, 226, 248, 449, 507, 510
Mph1103I	ATGCAT	1 cut(s)	102
MseI	TTAA	2 cut(s)	188, 479
MslI	CAYNNNNRTG	2 cut(s)	164, 548
MspI	CCGG	1 cut(s)	512
MspR9I	CCNGG	2 cut(s)	261, 374
Mva1269I	GAATGC	2 cut(s)	253, 347
MvaI	CCWGG	2 cut(s)	261, 374
MwoI	GCNNNNNNNGC	1 cut(s)	428
NdeII	GATC	7 cut(s)	116, 193, 208, 283, 384, 607, 613
NlaIII	CATG	5 cut(s)	30, 104, 341, 352, 549
NlaIV	GGNNCC	1 cut(s)	471
NmuCI	GTSAC	3 cut(s)	268, 289, 507
NsiI	ATGCAT	1 cut(s)	102
PagI	TCATGA	1 cut(s)	337
PasI	CCCWGGG	1 cut(s)	373
PctI	GAATGC	2 cut(s)	253, 347
PkrI	GCNGC	1 cut(s)	70
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PshBI	ATTAAT	1 cut(s)	479
Psp124BI	GAGCTC	2 cut(s)	337, 561
Psp6I	CCWGG	2 cut(s)	259, 372
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	2 cut(s)	259, 372
PspN4I	GGNNCC	1 cut(s)	471
PspPI	GGNCC	2 cut(s)	257, 278
PsuI	RGATCY	2 cut(s)	116, 193
RseI	CAYNNNNRTG	2 cut(s)	164, 548
SacI	GAGCTC	2 cut(s)	337, 561
SaqAI	TTAA	2 cut(s)	188, 479
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	7 cut(s)	116, 193, 208, 283, 384, 607, 613
Sau96I	GGNCC	2 cut(s)	257, 278
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	2 cut(s)	261, 374
SduI	GDGCHC	2 cut(s)	337, 561
SetI	ASST	7 cut(s)	150, 275, 337, 460, 499, 561, 586
SfaNI	GCATC	2 cut(s)	160, 540
SfcI	CTRYAG	1 cut(s)	180
SmiMI	CAYNNNNRTG	2 cut(s)	164, 548
SmlI	CTYRAG	1 cut(s)	238
SmoI	CTYRAG	1 cut(s)	238
Sse9I	AATT	6 cut(s)	75, 87, 124, 296, 314, 476
SsiI	CCGC	1 cut(s)	414
SstI	GAGCTC	2 cut(s)	337, 561
StyD4I	CCNGG	2 cut(s)	259, 372
TaaI	ACNGT	1 cut(s)	381
TaqI	TCGA	1 cut(s)	616
TaqII	GACCGA	1 cut(s)	259
TasI	AATT	6 cut(s)	75, 87, 124, 296, 314, 476
Tru1I	TTAA	2 cut(s)	188, 479
Tru9I	TTAA	2 cut(s)	188, 479
TseFI	GTSAC	3 cut(s)	268, 289, 507
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	3 cut(s)	268, 289, 507
TspDTI	ATGAA	1 cut(s)	354
TspGWI	ACGGA	1 cut(s)	308
VspI	ATTAAT	1 cut(s)	479
XapI	RAATTY	1 cut(s)	296
Zsp2I	ATGCAT	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.