Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8058994.1

Orthogroup ID

OG0006473

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 554

Gene Structure 554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8058994.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

cctgatcgtgtcacggacttctgtaagaggaacaaattacagctcattataagagctcatgaatgtgttatggatggttttgaacggtttgcccagggacaattgatcactcttttttctgccaccaactattgtggaacggcaaacaatgctggtgcaatactggtggttggcagggggctggttgtagttccaaaactaattcatccgctgccacctcctcttcagtcaccggagacatctcctgaacgcgtcatagatgacacatggatgcaggtaaacagttgcatagtgccaatacacaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_3 Kelch_4 Metallophos STPPase_N

Protein Analysis

102

Amino Acids

11.29

Weight (kDa)

7.27

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03080
fragaria_vesca	FvH4_2g24460 FvH4_2g24460 FvH4_2g24460 FvH4_2g24460
malus_domestica	MD03G1274100.v1.1 MD11G1296400.v1.1
prunus_persica	Prupe.8G250300_v2.0.a1 Prupe.8G268100_v2.0.a1 Prupe.8G268200_v2.0.a1
pyrus_communis	pycom03g21840 pycom03g21850 pycom11g26080
rosa_chinensis	RchiOBHm_Chr6g0292301
rosa_laevigata	RLG00000012044
rosa_multiflora	Rmu_co8058994.1_g000001 Rmu_co8428867.1_g000001 Rmu_sc0002993.1_g000020 Rmu_sc0011960.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175230
rosa_rugosa	Rorug06G0225300
rosa_samantha	Rh6AG338700 Rh6BG345800 Rh6CG352900 Rh6DG338700
rosa_wichuraiana	Rw6G029480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	50
Acc36I	ACCTGC	1 cut(s)	265
AccII	CGCG	1 cut(s)	252
AciI	CCGC	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	209
AflIII	ACRYGT	1 cut(s)	250
AgsI	TTSAA	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	2 cut(s)	43, 56
AluI	AGCT	2 cut(s)	43, 56
Alw21I	GWGCWC	1 cut(s)	58
Alw26I	GTCTC	1 cut(s)	230
ApeKI	GCWGC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	222
BanII	GRGCYC	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	198
BccI	CCATC	1 cut(s)	68
BceAI	ACGGC	1 cut(s)	156
BciT130I	CCWGG	1 cut(s)	95
BclI	TGATCA	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	265
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
Bme1390I	CCNGG	1 cut(s)	95
BmrFI	CCNGG	1 cut(s)	95
BmsI	GCATC	1 cut(s)	261
BsaJI	CCNNGG	2 cut(s)	93, 94
BsaWI	WCCGGW	1 cut(s)	232
Bse1I	ACTGG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	2 cut(s)	93, 94
BseGI	GGATG	3 cut(s)	79, 205, 276
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	2 cut(s)	4, 105
BspACI	CCGC	1 cut(s)	209
BspFNI	CGCG	1 cut(s)	252
BspHI	TCATGA	1 cut(s)	58
BspMI	ACCTGC	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	93, 94
BssMI	GATC	2 cut(s)	4, 105
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	2 cut(s)	87, 284
Bst6I	CTCTTC	1 cut(s)	228
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstF5I	GGATG	3 cut(s)	79, 205, 276
BstFNI	CGCG	1 cut(s)	252
BstKTI	GATC	2 cut(s)	7, 108
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	2 cut(s)	4, 105
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	93
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	198
BtsCI	GGATG	3 cut(s)	79, 205, 276
BveI	ACCTGC	1 cut(s)	265
CciI	TCATGA	1 cut(s)	58
CseI	GACGC	1 cut(s)	241
CspCI	CAANNNNNGTGG	4 cut(s)	115, 147, 150, 182
CviAII	CATG	2 cut(s)	59, 267
CviJI	RGCY	3 cut(s)	43, 56, 181
CviKI_1	RGCY	3 cut(s)	43, 56, 181
DpnI	GATC	2 cut(s)	6, 107
DpnII	GATC	2 cut(s)	4, 105
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Ecl136II	GAGCTC	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	58
Eco53kI	GAGCTC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	58
FaeI	CATG	2 cut(s)	62, 270
FaiI	YATR	6 cut(s)	50, 60, 71, 257, 268, 290
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	2 cut(s)	58, 266
FbaI	TGATCA	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	212
FokI	GGATG	3 cut(s)	86, 192, 283
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	1 cut(s)	212
GluI	GCNGC	1 cut(s)	212
HapII	CCGG	1 cut(s)	233
HgaI	GACGC	1 cut(s)	241
Hin1II	CATG	2 cut(s)	62, 270
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	1 cut(s)	222
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188III	TCNNGA	2 cut(s)	59, 245
Hpy8I	GTNNAC	1 cut(s)	280
HpyCH4III	ACNGT	2 cut(s)	87, 284
HpyCH4V	TGCA	3 cut(s)	158, 274, 288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
Hsp92II	CATG	2 cut(s)	62, 270
Ksp22I	TGATCA	1 cut(s)	105
Kzo9I	GATC	2 cut(s)	4, 105
Lsp1109I	GCAGC	1 cut(s)	198
LweI	GCATC	1 cut(s)	261
MaeIII	GTNAC	2 cut(s)	10, 228
MalI	GATC	2 cut(s)	6, 107
MboI	GATC	2 cut(s)	4, 105
MboII	GAAGA	1 cut(s)	215
MfeI	CAATTG	1 cut(s)	101
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	4 cut(s)	35, 101, 201, 304
MluI	ACGCGT	1 cut(s)	250
MnlI	CCTC	3 cut(s)	21, 228, 231
MseI	TTAA	1 cut(s)	307
MslI	CAYNNNNRTG	2 cut(s)	63, 269
MspA1I	CMGCKG	1 cut(s)	211
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	95
MunI	CAATTG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	95
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	2 cut(s)	4, 105
NlaIII	CATG	2 cut(s)	62, 270
NmuCI	GTSAC	2 cut(s)	10, 228
PagI	TCATGA	1 cut(s)	58
PasI	CCCWGGG	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	213
PsiI	TTATAA	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
RseI	CAYNNNNRTG	2 cut(s)	63, 269
SacI	GAGCTC	1 cut(s)	58
SaqAI	TTAA	1 cut(s)	307
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	2 cut(s)	4, 105
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	4 cut(s)	45, 58, 220, 279
SfaNI	GCATC	1 cut(s)	261
SmiMI	CAYNNNNRTG	2 cut(s)	63, 269
Sse9I	AATT	4 cut(s)	35, 101, 201, 304
SsiI	CCGC	1 cut(s)	209
SstI	GAGCTC	1 cut(s)	58
StyD4I	CCNGG	1 cut(s)	93
TaaI	ACNGT	2 cut(s)	87, 284
TasI	AATT	4 cut(s)	35, 101, 201, 304
Tru1I	TTAA	1 cut(s)	307
Tru9I	TTAA	1 cut(s)	307
TseFI	GTSAC	2 cut(s)	10, 228
TseI	GCWGC	1 cut(s)	211
Tsp45I	GTSAC	2 cut(s)	10, 228
TspDTI	ATGAA	2 cut(s)	75, 194
TspGWI	ACGGA	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.