Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006473

Physical Location & Seq

Genomic Coordinates Reverse (-)

36192259 .. 36194334

Gene Structure 2076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0225300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGACGATAACGAAACAGAGACAACCAAAATGGAAAATCGGCGACCAGCCAAAACAGAGGTGGGCAACGTCGGGGGACGCCGCTAATCACAAGTCAAAGACGGGAGCTTTGACGGCAAAGCCTGAGCCTCTGCGTTTGGAAGCCTCTCCAAATTCTGGAAAAGGGACGAGAATTTGGGCAATTGGGGAGTGGAGATATGGAATCACTTGGCATGGATTTGCAAAGGCTTTCGCAAAAGCATGGAGAGCCTCCTGCCTAGCTACTCAAGCTGATCAAGCAAAGATCGTCATGCCTGCTGCAAAAACTTTCCTGTTGCAACCGACATGCATGAGAGACCTTTTTGGAGCTGTCAGGAAGGAACAGAAAGAGGTGGTGGCAAGAATAAAAGATCTGAAAGGGGAAGAACGGGGAGTAGGGTCTGTGCTTGATCAAAAGAAGGGAGCAGAAATAGTTAAGGAGACGTTGGAGGAGCTAGGAGCACCCGAGAAAGCACATCATGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_3 Kelch_4 Metallophos STPPase_N

Protein Analysis

168

Amino Acids

18.54

Weight (kDa)

9.89

Isoelectric Point (pI)

30.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03080
fragaria_vesca	FvH4_2g24460 FvH4_2g24460 FvH4_2g24460 FvH4_2g24460
malus_domestica	MD03G1274100.v1.1 MD11G1296400.v1.1
prunus_persica	Prupe.8G250300_v2.0.a1 Prupe.8G268100_v2.0.a1 Prupe.8G268200_v2.0.a1
pyrus_communis	pycom03g21840 pycom03g21850 pycom11g26080
rosa_chinensis	RchiOBHm_Chr6g0292301
rosa_laevigata	RLG00000012044
rosa_multiflora	Rmu_co8058994.1_g000001 Rmu_co8428867.1_g000001 Rmu_sc0002993.1_g000020 Rmu_sc0011960.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175230
rosa_rugosa	Rorug06G0225300
rosa_samantha	Rh6AG338700 Rh6BG345800 Rh6CG352900 Rh6DG338700
rosa_wichuraiana	Rw6G029480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	155
AciI	CCGC	1 cut(s)	81
AcsI	RAATTY	2 cut(s)	151, 171
AcyI	GRCGYC	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	155
AluBI	AGCT	6 cut(s)	107, 260, 269, 347, 472, 503
AluI	AGCT	6 cut(s)	107, 260, 269, 347, 472, 503
Alw21I	GWGCWC	1 cut(s)	481
Alw26I	GTCTC	3 cut(s)	13, 327, 452
Ama87I	CYCGRG	1 cut(s)	482
ApeKI	GCWGC	2 cut(s)	296, 500
ApoI	RAATTY	2 cut(s)	151, 171
ArsI	GACNNNNNNTTYG	2 cut(s)	91, 123
AvaI	CYCGRG	1 cut(s)	482
Bbv12I	GWGCWC	1 cut(s)	481
BbvI	GCAGC	1 cut(s)	283
BceAI	ACGGC	1 cut(s)	129
BclI	TGATCA	2 cut(s)	271, 427
BcoDI	GTCTC	3 cut(s)	13, 327, 452
BfaI	CTAG	2 cut(s)	257, 473
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	3 cut(s)	81, 297, 501
BlsI	GCNGC	3 cut(s)	82, 298, 502
BmeT110I	CYCGRG	1 cut(s)	482
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	482
BseXI	GCAGC	1 cut(s)	283
BsiHKAI	GWGCWC	1 cut(s)	481
BsiHKCI	CYCGRG	1 cut(s)	482
BslFI	GGGAC	2 cut(s)	89, 178
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	3 cut(s)	13, 327, 452
BsmBI	CGTCTC	1 cut(s)	452
BsmFI	GGGAC	2 cut(s)	89, 178
Bso31I	GGTCTC	1 cut(s)	327
BsoBI	CYCGRG	1 cut(s)	482
Bsp1286I	GDGCHC	1 cut(s)	481
Bsp143I	GATC	4 cut(s)	271, 282, 388, 427
BspACI	CCGC	1 cut(s)	81
BspCNI	CTCAG	1 cut(s)	115
BspTNI	GGTCTC	1 cut(s)	327
BssMI	GATC	4 cut(s)	271, 282, 388, 427
BssNI	GRCGYC	1 cut(s)	78
BstACI	GRCGYC	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	123
BstKTI	GATC	4 cut(s)	274, 285, 391, 430
BstMAI	GTCTC	3 cut(s)	13, 327, 452
BstMBI	GATC	4 cut(s)	271, 282, 388, 427
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 245, 266, 275, 497
BstNSI	RCATGY	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
Cac8I	GCNNGC	1 cut(s)	294
CseI	GACGC	1 cut(s)	86
CviAII	CATG	6 cut(s)	212, 240, 289, 324, 328, 497
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	4 cut(s)	273, 284, 390, 429
DpnII	GATC	4 cut(s)	271, 282, 388, 427
Eco31I	GGTCTC	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	482
EcoT22I	ATGCAT	1 cut(s)	329
Esp3I	CGTCTC	1 cut(s)	452
FaeI	CATG	6 cut(s)	215, 243, 292, 327, 331, 500
FaiI	YATR	7 cut(s)	198, 213, 241, 290, 325, 329, 498
FaqI	GGGAC	2 cut(s)	89, 178
FatI	CATG	6 cut(s)	211, 239, 288, 323, 327, 496
FbaI	TGATCA	2 cut(s)	271, 427
Fnu4HI	GCNGC	3 cut(s)	81, 297, 501
Fsp4HI	GCNGC	3 cut(s)	81, 297, 501
FspBI	CTAG	2 cut(s)	257, 473
GluI	GCNGC	3 cut(s)	81, 297, 501
HgaI	GACGC	1 cut(s)	86
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	6 cut(s)	215, 243, 292, 327, 331, 500
HinfI	GANTC	1 cut(s)	201
Hpy188I	TCNGA	1 cut(s)	393
Hpy188III	TCNNGA	2 cut(s)	156, 352
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	349, 430
HpyCH4IV	ACGT	2 cut(s)	68, 461
HpyCH4V	TGCA	5 cut(s)	221, 299, 316, 327, 500
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 245, 266, 275, 497
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	2 cut(s)	68, 461
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	6 cut(s)	215, 243, 292, 327, 331, 500
Ksp22I	TGATCA	2 cut(s)	271, 427
Kzo9I	GATC	4 cut(s)	271, 282, 388, 427
LmnI	GCTCC	5 cut(s)	104, 344, 440, 469, 476
LpnPI	CCDG	7 cut(s)	59, 135, 141, 265, 306, 323, 337
Lsp1109I	GCAGC	1 cut(s)	283
MaeI	CTAG	2 cut(s)	257, 473
MaeII	ACGT	2 cut(s)	68, 461
MalI	GATC	4 cut(s)	273, 284, 390, 429
MboI	GATC	4 cut(s)	271, 282, 388, 427
MboII	GAAGA	1 cut(s)	413
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	481
MluCI	AATT	3 cut(s)	151, 171, 180
MmeI	TCCRAC	1 cut(s)	444
MnlI	CCTC	6 cut(s)	51, 138, 154, 259, 361, 460
Mph1103I	ATGCAT	1 cut(s)	329
MseI	TTAA	1 cut(s)	453
MunI	CAATTG	1 cut(s)	180
MwoI	GCNNNNNNNGC	5 cut(s)	113, 245, 266, 275, 497
NdeII	GATC	4 cut(s)	271, 282, 388, 427
NlaIII	CATG	6 cut(s)	215, 243, 292, 327, 331, 500
NsiI	ATGCAT	1 cut(s)	329
NspI	RCATGY	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	201
PflMI	CCANNNNNTGG	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	82, 298, 502
PsuI	RGATCY	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	3 cut(s)	81, 297, 501
Sau3AI	GATC	4 cut(s)	271, 282, 388, 427
SduI	GDGCHC	1 cut(s)	481
SmlI	CTYRAG	1 cut(s)	264
SmoI	CTYRAG	1 cut(s)	264
Sse9I	AATT	3 cut(s)	151, 171, 180
SsiI	CCGC	1 cut(s)	81
SspMI	CTAG	2 cut(s)	257, 473
TaiI	ACGT	2 cut(s)	71, 464
TasI	AATT	3 cut(s)	151, 171, 180
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	201
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TseI	GCWGC	2 cut(s)	296, 500
Van91I	CCANNNNNTGG	1 cut(s)	155
XapI	RAATTY	2 cut(s)	151, 171
XceI	RCATGY	1 cut(s)	327
XcmI	CCANNNNNNNNNTGG	1 cut(s)	57
XspI	CTAG	2 cut(s)	257, 473
Zsp2I	ATGCAT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.