Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8428867.1

Orthogroup ID

OG0006473

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1395

Gene Structure 1395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8428867.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 545 bp

gaaaaagggttctttctgattcctgggctctggatactgcacagaaaccttacgtatgggctaagctgagtccagaaggggataggccttctgctagaatgtatgcaacagccagtgcccgctcagatggcatgtttttgctttgtggcggaagagacgcttccggggcgcctctagctgatgcttatggactgctcatgcatagaaatggtcagtgggagtggactctcgcaccgggagtgtctccttcaccaagatatcaacatgctgcggtttttgttggtgcaagattacatgtaacgggaggtgttctcaggggaggacgtgctgtagaaggggaaggagctattgcagtattggacactgccgctggagtttggttagatagaagcgggcttgtgacctcctcacggacaggcaagggacaaaatgactatgatccccctttggagcttatgcgtcgttgtcgccatgcagccgcatctcttggtgttcgtatttacatttatggcggtctcaagggaggtaaaaactttagaccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_3 Kelch_4 Metallophos STPPase_N

Protein Analysis

180

Amino Acids

19.27

Weight (kDa)

9.82

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03080
fragaria_vesca	FvH4_2g24460 FvH4_2g24460 FvH4_2g24460 FvH4_2g24460
malus_domestica	MD03G1274100.v1.1 MD11G1296400.v1.1
prunus_persica	Prupe.8G250300_v2.0.a1 Prupe.8G268100_v2.0.a1 Prupe.8G268200_v2.0.a1
pyrus_communis	pycom03g21840 pycom03g21850 pycom11g26080
rosa_chinensis	RchiOBHm_Chr6g0292301
rosa_laevigata	RLG00000012044
rosa_multiflora	Rmu_co8058994.1_g000001 Rmu_co8428867.1_g000001 Rmu_sc0002993.1_g000020 Rmu_sc0011960.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175230
rosa_rugosa	Rorug06G0225300
rosa_samantha	Rh6AG338700 Rh6BG345800 Rh6CG352900 Rh6DG338700
rosa_wichuraiana	Rw6G029480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	168
AccBSI	CCGCTC	1 cut(s)	122
AciI	CCGC	7 cut(s)	120, 149, 271, 368, 392, 479, 512
AclWI	GGATC	1 cut(s)	433
AcyI	GRCGYC	1 cut(s)	169
AfiI	CCNNNNNNNGG	1 cut(s)	410
AflIII	ACRYGT	1 cut(s)	294
AjiI	CACGTC	1 cut(s)	325
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	4 cut(s)	66, 178, 346, 453
AluI	AGCT	4 cut(s)	66, 178, 346, 453
Alw26I	GTCTC	3 cut(s)	149, 248, 520
AlwI	GGATC	1 cut(s)	433
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	2 cut(s)	268, 475
AspLEI	GCGC	1 cut(s)	171
AsuC2I	CCSGG	2 cut(s)	165, 236
AsuHPI	GGTGA	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	120
BanI	GGYRCC	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	255, 487
BccI	CCATC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	24
BciVI	GTATCC	1 cut(s)	27
BcnI	CCSGG	2 cut(s)	165, 236
BcoDI	GTCTC	3 cut(s)	149, 248, 520
BfaI	CTAG	2 cut(s)	95, 175
BfmI	CTRYAG	1 cut(s)	329
BfoI	RGCGCY	1 cut(s)	172
BfuI	GTATCC	1 cut(s)	27
BisI	GCNGC	4 cut(s)	269, 368, 476, 479
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	4 cut(s)	270, 369, 477, 480
Bme1390I	CCNGG	3 cut(s)	24, 165, 236
BmgBI	CACGTC	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	170
BmrFI	CCNGG	3 cut(s)	24, 165, 236
BmsI	GCATC	2 cut(s)	171, 490
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
BpmI	CTGGAG	1 cut(s)	392
Bpu1102I	GCTNAGC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	502
BpuMI	CCSGG	2 cut(s)	165, 236
BsaAI	YACGTR	1 cut(s)	54
BsaHI	GRCGYC	1 cut(s)	169
BsaI	GGTCTC	1 cut(s)	520
BsaJI	CCNNGG	2 cut(s)	23, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	113
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	2 cut(s)	23, 164
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMII	CTCAG	3 cut(s)	58, 137, 327
BseNI	ACTGG	1 cut(s)	113
BseRI	GAGGAG	1 cut(s)	396
BseSI	GKGCMC	1 cut(s)	120
BseXI	GCAGC	2 cut(s)	255, 487
BsgI	GTGCAG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	168
BsiSI	CCGG	2 cut(s)	164, 235
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	3 cut(s)	149, 248, 520
BsmBI	CGTCTC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	437
BsnI	GGCC	1 cut(s)	87
Bso31I	GGTCTC	1 cut(s)	520
Bsp1286I	GDGCHC	2 cut(s)	30, 120
Bsp143I	GATC	1 cut(s)	438
Bsp1720I	GCTNAGC	1 cut(s)	62
BspACI	CCGC	7 cut(s)	120, 149, 271, 368, 392, 479, 512
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	3 cut(s)	59, 136, 326
BspLI	GGNNCC	1 cut(s)	170
BspPI	GGATC	1 cut(s)	433
BspT107I	GGYRCC	1 cut(s)	168
BspTNI	GGTCTC	1 cut(s)	520
BsrBI	CCGCTC	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	23, 164
BssMI	GATC	1 cut(s)	438
BssNI	GRCGYC	1 cut(s)	169
Bst2UI	CCWGG	1 cut(s)	24
Bst6I	CTCTTC	1 cut(s)	147
BstACI	GRCGYC	1 cut(s)	169
BstBAI	YACGTR	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	120, 394
BstDEI	CTNAG	4 cut(s)	62, 67, 123, 313
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	1 cut(s)	441
BstMAI	GTCTC	3 cut(s)	149, 248, 520
BstMBI	GATC	1 cut(s)	438
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 166, 175
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	3 cut(s)	135, 268, 298
BstSCI	CCNGG	3 cut(s)	22, 163, 234
BstSFI	CTRYAG	1 cut(s)	329
BstSLI	GKGCMC	1 cut(s)	120
BstSNI	TACGTA	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	255, 487
BsuI	GTATCC	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	87
BtrI	CACGTC	1 cut(s)	325
BtsI	GCAGTG	1 cut(s)	362
BtsIMutI	CAGTG	3 cut(s)	120, 220, 362
Cac8I	GCNNGC	2 cut(s)	120, 394
CfoI	GCGC	1 cut(s)	171
CseI	GACGC	2 cut(s)	166, 448
CviAII	CATG	5 cut(s)	132, 198, 265, 295, 472
DdeI	CTNAG	4 cut(s)	62, 67, 123, 313
DinI	GGCGCC	1 cut(s)	170
DpnI	GATC	1 cut(s)	440
DpnII	GATC	1 cut(s)	438
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
EciI	GGCGGA	1 cut(s)	164
Eco105I	TACGTA	1 cut(s)	54
Eco147I	AGGCCT	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	30
Eco31I	GGTCTC	1 cut(s)	520
Eco32I	GATATC	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	22
EcoRV	GATATC	1 cut(s)	259
EcoT22I	ATGCAT	1 cut(s)	203
EcoT38I	GRGCYC	1 cut(s)	30
EgeI	GGCGCC	1 cut(s)	170
EheI	GGCGCC	1 cut(s)	170
Esp3I	CGTCTC	1 cut(s)	149
FaeI	CATG	5 cut(s)	135, 201, 268, 298, 475
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	5 cut(s)	131, 197, 264, 294, 471
FauI	CCCGC	2 cut(s)	127, 385
Fnu4HI	GCNGC	4 cut(s)	269, 368, 476, 479
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	4 cut(s)	269, 368, 476, 479
FspBI	CTAG	2 cut(s)	95, 175
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	4 cut(s)	269, 368, 476, 479
GsuI	CTGGAG	1 cut(s)	392
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	2 cut(s)	164, 235
HgaI	GACGC	2 cut(s)	166, 448
HhaI	GCGC	1 cut(s)	171
Hin1I	GRCGYC	1 cut(s)	169
Hin1II	CATG	5 cut(s)	135, 201, 268, 298, 475
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	3 cut(s)	19, 69, 225
HpaII	CCGG	2 cut(s)	164, 235
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	2 cut(s)	18, 126
Hpy188III	TCNNGA	2 cut(s)	31, 73
Hpy8I	GTNNAC	1 cut(s)	224
Hpy99I	CGWCG	1 cut(s)	464
HpyAV	CCTTC	5 cut(s)	70, 98, 257, 328, 334
HpyCH4IV	ACGT	2 cut(s)	53, 324
HpyCH4V	TGCA	6 cut(s)	40, 106, 201, 286, 352, 475
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 166, 175
HpyF3I	CTNAG	4 cut(s)	62, 67, 123, 313
HpySE526I	ACGT	2 cut(s)	53, 324
Hsp92I	GRCGYC	1 cut(s)	169
Hsp92II	CATG	5 cut(s)	135, 201, 268, 298, 475
HspAI	GCGC	1 cut(s)	169
KasI	GGCGCC	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	438
LmnI	GCTCC	2 cut(s)	343, 450
Lsp1109I	GCAGC	2 cut(s)	255, 487
LweI	GCATC	2 cut(s)	171, 490
MaeI	CTAG	2 cut(s)	95, 175
MaeII	ACGT	2 cut(s)	53, 324
MaeIII	GTNAC	2 cut(s)	297, 399
MalI	GATC	1 cut(s)	440
MbiI	CCGCTC	1 cut(s)	122
MboI	GATC	1 cut(s)	438
MboII	GAAGA	1 cut(s)	164
MhlI	GDGCHC	2 cut(s)	30, 120
Mly113I	GGCGCC	1 cut(s)	169
MlyI	GAGTC	2 cut(s)	78, 219
MnlI	CCTC	6 cut(s)	182, 298, 313, 414, 417, 517
Mph1103I	ATGCAT	1 cut(s)	203
MslI	CAYNNNNRTG	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	370
MspI	CCGG	2 cut(s)	164, 235
MspR9I	CCNGG	3 cut(s)	24, 165, 236
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	3 cut(s)	128, 166, 175
NarI	GGCGCC	1 cut(s)	169
NciI	CCSGG	2 cut(s)	165, 236
NdeII	GATC	1 cut(s)	438
NlaIII	CATG	5 cut(s)	135, 201, 268, 298, 475
NlaIV	GGNNCC	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	399
NsiI	ATGCAT	1 cut(s)	203
NspI	RCATGY	3 cut(s)	135, 268, 298
PceI	AGGCCT	1 cut(s)	87
PciI	ACATGT	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	4 cut(s)	270, 369, 477, 480
PleI	GAGTC	2 cut(s)	77, 219
PluTI	GGCGCC	1 cut(s)	172
PpsI	GAGTC	2 cut(s)	77, 219
Ppu21I	YACGTR	1 cut(s)	54
PscI	ACATGT	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	170
RseI	CAYNNNNRTG	1 cut(s)	206
SatI	GCNGC	4 cut(s)	269, 368, 476, 479
Sau3AI	GATC	1 cut(s)	438
SchI	GAGTC	2 cut(s)	78, 219
ScrFI	CCNGG	3 cut(s)	24, 165, 236
SduI	GDGCHC	2 cut(s)	30, 120
SfaNI	GCATC	2 cut(s)	171, 490
SfcI	CTRYAG	1 cut(s)	329
SfoI	GGCGCC	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	517
SmoI	CTYRAG	1 cut(s)	517
SnaBI	TACGTA	1 cut(s)	54
SseBI	AGGCCT	1 cut(s)	87
SsiI	CCGC	7 cut(s)	120, 149, 271, 368, 392, 479, 512
SspDI	GGCGCC	1 cut(s)	168
SspMI	CTAG	2 cut(s)	95, 175
StuI	AGGCCT	1 cut(s)	87
StyD4I	CCNGG	3 cut(s)	22, 163, 234
TaiI	ACGT	2 cut(s)	56, 327
TauI	GCSGC	2 cut(s)	370, 481
TfiI	GAWTC	1 cut(s)	19
TscAI	CASTG	3 cut(s)	120, 220, 369
TseFI	GTSAC	1 cut(s)	399
TseI	GCWGC	2 cut(s)	268, 475
Tsp45I	GTSAC	1 cut(s)	399
TspGWI	ACGGA	1 cut(s)	426
TspRI	CASTG	3 cut(s)	120, 220, 369
XceI	RCATGY	3 cut(s)	135, 268, 298
XspI	CTAG	2 cut(s)	95, 175
Zsp2I	ATGCAT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.