pycom03g21850

serine threonine-protein phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0006473
Physical Location & Seq
Forward (+)
22055688 .. 22057221
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 639 bp
ATGGGCGAGAATGATGGAATATGGGCATGGACTCGGTTCAATCAACTTTTCAACTATCTCCCACTTGCTGCTCTAATTGAAAAGAAAATTATCTGTATGCATGGAGGCATTGGGAGATCCATCAATTCTTTAGAACAGATAGAGAAGCTTGAAAGACCCATTACAATGGATGCTGGGTCTATAGTTTTAATGGATCTTTTGTGGTCTGATCCCACAGAAAATGATAGTGTAGAGGGCTTGAGACCGAATGCCAGAGGGCCTGGTCTTGTCACCTTTGGGCCTGATCGTGTCACGGAATTCTGTAAGAGAAACAAATTACAACTCATTATACGAGCTCATGAATGCGTCATGGATGGATTTGAAAGATTTGCCCAGGGACAGTTGATCACTCTTTTCTCTGCAACCAACTATTGCGGGACAGCAAACAATGCTGGTGCTATACTGGTTGTTGGCAGAGGTTTGGTTGTGGTTCCGAAATTAATCCATCCTTTGCCACCTCCTCTTCAGTCACCGGAGACATCTCCTGAACGGGTCATAGACGACACATGGATGCAGGAGCTCAACATTCAAAGACCACCAACACCTACTCGTGGCCGACCACAGCCTGATCTTGATCGAAACTCACTTGCATATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kelch_3 Kelch_4 Metallophos STPPase_N

Protein Analysis

213

Amino Acids

23.66

Weight (kDa)

5.66

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 7 - 116 1.3e-17 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 414
AclWI GGATC 3 cut(s) 111, 201, 203
AcoI YGGCCR 1 cut(s) 592
AcsI RAATTY 1 cut(s) 296
AcuI CTGAAG 1 cut(s) 488
AfiI CCNNNNNNNGG 1 cut(s) 590
AgsI TTSAA 6 cut(s) 40, 52, 80, 152, 362, 569
AjnI CCWGG 2 cut(s) 259, 372
AluBI AGCT 3 cut(s) 148, 335, 559
AluI AGCT 3 cut(s) 148, 335, 559
Alw21I GWGCWC 2 cut(s) 337, 561
Alw26I GTCTC 2 cut(s) 235, 509
AlwI GGATC 3 cut(s) 111, 201, 203
AoxI GGCC 3 cut(s) 257, 278, 592
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 296
AseI ATTAAT 1 cut(s) 479
AspS9I GGNCC 2 cut(s) 257, 278
AsuHPI GGTGA 2 cut(s) 262, 501
BanII GRGCYC 2 cut(s) 337, 561
BauI CACGAG 1 cut(s) 588
Bbv12I GWGCWC 2 cut(s) 337, 561
BbvI GCAGC 1 cut(s) 55
BccI CCATC 4 cut(s) 8, 128, 347, 492
BciT130I CCWGG 2 cut(s) 261, 374
BclI TGATCA 1 cut(s) 384
BcoDI GTCTC 2 cut(s) 235, 509
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 2 cut(s) 261, 374
BmgT120I GGNCC 2 cut(s) 257, 278
BmiI GGNNCC 1 cut(s) 471
BmrFI CCNGG 2 cut(s) 261, 374
BmsI GCATC 2 cut(s) 160, 540
BpuEI CTTGAG 1 cut(s) 259
BsaBI GATNNNNATC 1 cut(s) 612
BsaI GGTCTC 1 cut(s) 235
BsaJI CCNNGG 2 cut(s) 372, 373
BsaWI WCCGGW 1 cut(s) 511
Bsc4I CCNNNNNNNGG 1 cut(s) 590
Bse1I ACTGG 1 cut(s) 447
Bse8I GATNNNNATC 1 cut(s) 612
BseBI CCWGG 2 cut(s) 261, 374
BseDI CCNNGG 2 cut(s) 372, 373
BseGI GGATG 4 cut(s) 175, 358, 484, 555
BseJI GATNNNNATC 1 cut(s) 612
BseLI CCNNNNNNNGG 1 cut(s) 590
BseNI ACTGG 1 cut(s) 447
BseRI GAGGAG 1 cut(s) 489
BseXI GCAGC 1 cut(s) 55
BseYI CCCAGC 1 cut(s) 173
BshFI GGCC 3 cut(s) 259, 280, 594
BsiHKAI GWGCWC 2 cut(s) 337, 561
BsiSI CCGG 1 cut(s) 512
BslFI GGGAC 2 cut(s) 390, 430
BslI CCNNNNNNNGG 1 cut(s) 590
BsmAI GTCTC 2 cut(s) 235, 509
BsmFI GGGAC 2 cut(s) 390, 430
BsmI GAATGC 2 cut(s) 253, 347
BsnI GGCC 3 cut(s) 259, 280, 594
Bso31I GGTCTC 1 cut(s) 235
Bsp1286I GDGCHC 2 cut(s) 337, 561
Bsp143I GATC 7 cut(s) 116, 193, 208, 283, 384, 607, 613
BspACI CCGC 1 cut(s) 414
BspANI GGCC 3 cut(s) 259, 280, 594
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 471
BspPI GGATC 3 cut(s) 111, 201, 203
BspTNI GGTCTC 1 cut(s) 235
BsrI ACTGG 1 cut(s) 447
BssECI CCNNGG 2 cut(s) 372, 373
BssMI GATC 7 cut(s) 116, 193, 208, 283, 384, 607, 613
BssSI CACGAG 1 cut(s) 588
Bst2BI CACGAG 1 cut(s) 588
Bst2UI CCWGG 2 cut(s) 261, 374
Bst4CI ACNGT 1 cut(s) 381
Bst6I CTCTTC 1 cut(s) 507
BstAPI GCANNNNNTGC 1 cut(s) 428
BstF5I GGATG 4 cut(s) 175, 358, 484, 555
BstKTI GATC 7 cut(s) 119, 196, 211, 286, 387, 610, 616
BstMAI GTCTC 2 cut(s) 235, 509
BstMBI GATC 7 cut(s) 116, 193, 208, 283, 384, 607, 613
BstMWI GCNNNNNNNGC 1 cut(s) 428
BstNI CCWGG 2 cut(s) 261, 374
BstSCI CCNGG 2 cut(s) 259, 372
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 2 cut(s) 116, 193
BstXI CCANNNNNNTGG 1 cut(s) 166
BstYI RGATCY 2 cut(s) 116, 193
BsuRI GGCC 3 cut(s) 259, 280, 594
BtsCI GGATG 4 cut(s) 175, 358, 484, 555
CciI TCATGA 1 cut(s) 337
Cfr13I GGNCC 2 cut(s) 257, 278
CseI GACGC 1 cut(s) 334
CviAII CATG 5 cut(s) 27, 101, 338, 349, 546
CviJI RGCY 8 cut(s) 148, 237, 259, 280, 335, 559, 594, 604
CviKI_1 RGCY 8 cut(s) 148, 237, 259, 280, 335, 559, 594, 604
DpnI GATC 7 cut(s) 118, 195, 210, 285, 386, 609, 615
DpnII GATC 7 cut(s) 116, 193, 208, 283, 384, 607, 613
EaeI YGGCCR 1 cut(s) 592
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Ecl136II GAGCTC 2 cut(s) 335, 559
Eco24I GRGCYC 2 cut(s) 337, 561
Eco31I GGTCTC 1 cut(s) 235
Eco53kI GAGCTC 2 cut(s) 335, 559
Eco57I CTGAAG 1 cut(s) 488
EcoICRI GAGCTC 2 cut(s) 335, 559
EcoO109I RGGNCCY 1 cut(s) 257
EcoRI GAATTC 1 cut(s) 296
EcoRII CCWGG 2 cut(s) 259, 372
EcoT22I ATGCAT 1 cut(s) 102
EcoT38I GRGCYC 2 cut(s) 337, 561
FaeI CATG 5 cut(s) 30, 104, 341, 352, 549
FaqI GGGAC 2 cut(s) 390, 430
FatI CATG 5 cut(s) 26, 100, 337, 348, 545
FauI CCCGC 1 cut(s) 407
FbaI TGATCA 1 cut(s) 384
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 4 cut(s) 182, 365, 471, 562
FriOI GRGCYC 2 cut(s) 337, 561
Fsp4HI GCNGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 69
GsaI CCCAGC 1 cut(s) 177
HaeIII GGCC 3 cut(s) 259, 280, 594
HapII CCGG 1 cut(s) 512
HgaI GACGC 1 cut(s) 334
Hin1II CATG 5 cut(s) 30, 104, 341, 352, 549
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 1 cut(s) 31
HpaII CCGG 1 cut(s) 512
HphI GGTGA 2 cut(s) 262, 501
Hpy188I TCNGA 2 cut(s) 208, 474
Hpy188III TCNNGA 3 cut(s) 338, 524, 611
HpyCH4III ACNGT 1 cut(s) 381
HpyCH4V TGCA 4 cut(s) 100, 401, 553, 629
HpyF10VI GCNNNNNNNGC 1 cut(s) 428
Hsp92II CATG 5 cut(s) 30, 104, 341, 352, 549
Ksp22I TGATCA 1 cut(s) 384
Kzo9I GATC 7 cut(s) 116, 193, 208, 283, 384, 607, 613
LmnI GCTCC 1 cut(s) 556
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 2 cut(s) 160, 540
MaeIII GTNAC 3 cut(s) 268, 289, 507
MalI GATC 7 cut(s) 118, 195, 210, 285, 386, 609, 615
MboI GATC 7 cut(s) 116, 193, 208, 283, 384, 607, 613
MboII GAAGA 1 cut(s) 494
MflI RGATCY 2 cut(s) 116, 193
MhlI GDGCHC 2 cut(s) 337, 561
MluCI AATT 6 cut(s) 75, 87, 124, 296, 314, 476
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 6 cut(s) 98, 226, 248, 449, 507, 510
Mph1103I ATGCAT 1 cut(s) 102
MseI TTAA 2 cut(s) 188, 479
MslI CAYNNNNRTG 2 cut(s) 164, 548
MspI CCGG 1 cut(s) 512
MspR9I CCNGG 2 cut(s) 261, 374
Mva1269I GAATGC 2 cut(s) 253, 347
MvaI CCWGG 2 cut(s) 261, 374
MwoI GCNNNNNNNGC 1 cut(s) 428
NdeII GATC 7 cut(s) 116, 193, 208, 283, 384, 607, 613
NlaIII CATG 5 cut(s) 30, 104, 341, 352, 549
NlaIV GGNNCC 1 cut(s) 471
NmuCI GTSAC 3 cut(s) 268, 289, 507
NsiI ATGCAT 1 cut(s) 102
PagI TCATGA 1 cut(s) 337
PasI CCCWGGG 1 cut(s) 373
PctI GAATGC 2 cut(s) 253, 347
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PshBI ATTAAT 1 cut(s) 479
Psp124BI GAGCTC 2 cut(s) 337, 561
Psp6I CCWGG 2 cut(s) 259, 372
PspFI CCCAGC 1 cut(s) 173
PspGI CCWGG 2 cut(s) 259, 372
PspN4I GGNNCC 1 cut(s) 471
PspPI GGNCC 2 cut(s) 257, 278
PsuI RGATCY 2 cut(s) 116, 193
RseI CAYNNNNRTG 2 cut(s) 164, 548
SacI GAGCTC 2 cut(s) 337, 561
SaqAI TTAA 2 cut(s) 188, 479
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 7 cut(s) 116, 193, 208, 283, 384, 607, 613
Sau96I GGNCC 2 cut(s) 257, 278
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 2 cut(s) 261, 374
SduI GDGCHC 2 cut(s) 337, 561
SetI ASST 7 cut(s) 150, 275, 337, 460, 499, 561, 586
SfaNI GCATC 2 cut(s) 160, 540
SfcI CTRYAG 1 cut(s) 180
SmiMI CAYNNNNRTG 2 cut(s) 164, 548
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
Sse9I AATT 6 cut(s) 75, 87, 124, 296, 314, 476
SsiI CCGC 1 cut(s) 414
SstI GAGCTC 2 cut(s) 337, 561
StyD4I CCNGG 2 cut(s) 259, 372
TaaI ACNGT 1 cut(s) 381
TaqI TCGA 1 cut(s) 616
TaqII GACCGA 1 cut(s) 259
TasI AATT 6 cut(s) 75, 87, 124, 296, 314, 476
Tru1I TTAA 2 cut(s) 188, 479
Tru9I TTAA 2 cut(s) 188, 479
TseFI GTSAC 3 cut(s) 268, 289, 507
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 3 cut(s) 268, 289, 507
TspDTI ATGAA 1 cut(s) 354
TspGWI ACGGA 1 cut(s) 308
VspI ATTAAT 1 cut(s) 479
XapI RAATTY 1 cut(s) 296
Zsp2I ATGCAT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.