pycom04g03470

isoform X1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
3098474 .. 3103096
4623 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g03470.6

Sequence Viewer

Length: 1659 bp
ATGATGGCTGTGGTGCTAGAGAATATTTCAACTATTACTGCTGTTGCTAGGGCGACAATCTCTGCTGTTTATCTAACTGCAAAGATAGTCTCTACTGTTCCTAATGTATCATATCACAAGAAGGCTTTTCCTGATGCTCTATTTCACCAATTACTCCTAGCAATGGCCCACCCAGACCATGAAACACGAGTTGGAGCACACAGCATTTTCTCTATGGTGCTTATGCCTTCCCTACTTGCTCCTTGGTTAGAGCAGAAAATGAACCCTCTGCAAGCTGTTTCTGCATCTGTTAGTACATTGCAGAAGGTAAAGGAGGGAAGTTTCTCCCTTCAGGATGAAGAGAAAGATGCAGTAGTACCTTTGAATGGAGAACCGAGGGAAGAAGGAAGTCAAATATCAAATGTCTTTGAGAAACAATCTGGTCAATCTCACAACTTCAAGAGTGCTTTGACTTGTGGAAGAACAGATCTAACATCCCTTCGGTTAAGTAGTCACCAAGTGAGTCTTTTGCTTTCATCAATCTGGGTTCAGGCAACATCTGCAGAGAATACCCCTGAGAACTTTGAGGCAATGGCCCACACTTATAACGTCGCGTTACTGTTTACCCGATCAAAGGCCTCCAGTCACGTGGCTTTAGTAAGATGTTTCCAGCTGGCATTTTCTATTAGAACTATTTCCTTGGATGTAGATGGTGGTTTGGACCCATCTCGTAGAAGGTCTCTCTTTACCCTGGCCTCGTACATGCTTATATTTTCAGCCCGGGCTGGTGACCTCCCAGAGCTAATTCCAATTTTCAAAGCATCTATGACAGATAGAATGGTTGATCCCGGTCTTCAGTTAGTTGATGGTATCTGGCTGCAGGCAGTTTCTATTGAATCTGATAAGGAGAGGATATCTTATGGATCATTGCGGGAAGATGAAGTTGCTGCATTGAAGTCTCTGTCAGCAGTTGAATTAGATGATCAGCTACTAAGAGAAACTGTGATATCCCACTTCATGATTAAATTTGCAAAATTGTCAGAGGTTGAGTTGTCTAGCATCAAGAAGGAACTCTTACAAGGATTTTCACCTGATGATTCATTTCCTTTAGGAGCTCCGCTATTCATGGAGACACCACGACCATGTTCTCCTCTTGCCCAGATAGATTTTCCTGAATTTGATGAGGTGATGCCTCCAGGTTCATTGACAGATGATGAAGCCTACCCTGAACCTAGTGGAAGTCAGTCAGACCGCAAATCATCACTCTCCATCAATACACTTGACATTCTAAGCGTTAATCAGCTCCTTGATTCAGTTCTGGAAACAGCACGAGAAGTTGCAAGCAACCCAGTTTCCACAACGCCAATACCTTATGACCAAATGAAGAGCCAATGTGAAGCCCTTGTAACAGGTAAACAGCAGAAGATGGCAGTTCTTCATAGTTTCAAGCAAGCAGACACCAAGGCGATAGTCCTCCTCTCCAGTGAAAGTGAAAATACATGCCACACGTTATCAACCACGGCAACGGAATTTTCAGAAGGGGATCTAAAGTTGAAAAACAAGGATCAAATTCGAGTACAAAATCAACTTCTCCTCTGCTCGCGTGAGTATGGACAACATTCTTTCAAATTACCGCCTTCAAGTCCGTATGACAAATTCTTGAAAGCTGCCGGATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

553

Amino Acids

60.68

Weight (kDa)

5.35

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 585
AccII CGCG 2 cut(s) 593, 1582
AciI CCGC 4 cut(s) 910, 1097, 1231, 1613
AclWI GGATC 4 cut(s) 818, 910, 1530, 1551
AcsI RAATTY 5 cut(s) 1004, 1154, 1508, 1548, 1634
AcuI CTGAAG 2 cut(s) 314, 818
AcvI CACGTG 1 cut(s) 628
AdeI CACNNNGTG 1 cut(s) 499
AfaI GTAC 4 cut(s) 295, 357, 740, 1557
AfiI CCNNNNNNNGG 3 cut(s) 163, 365, 613
AflIII ACRYGT 1 cut(s) 1485
AjnI CCWGG 2 cut(s) 729, 1174
AjuI GAANNNNNNNTTGG 2 cut(s) 174, 206
AluBI AGCT 7 cut(s) 275, 652, 781, 967, 1094, 1282, 1646
AluI AGCT 7 cut(s) 275, 652, 781, 967, 1094, 1282, 1646
Alw21I GWGCWC 2 cut(s) 199, 1096
Alw26I GTCTC 4 cut(s) 94, 723, 942, 1103
AlwI GGATC 4 cut(s) 818, 910, 1530, 1551
Ama87I CYCGRG 1 cut(s) 759
AoxI GGCC 4 cut(s) 165, 573, 615, 732
ApeKI GCWGC 3 cut(s) 856, 926, 1646
ApoI RAATTY 5 cut(s) 1004, 1154, 1508, 1548, 1634
Asp700I GAANNNNTTC 1 cut(s) 673
AspS9I GGNCC 3 cut(s) 166, 574, 700
AsuC2I CCSGG 3 cut(s) 760, 761, 828
AsuHPI GGTGA 5 cut(s) 137, 485, 779, 1059, 1177
AvaI CYCGRG 1 cut(s) 759
AvaII GGWCC 1 cut(s) 700
BanII GRGCYC 1 cut(s) 1096
BauI CACGAG 2 cut(s) 186, 1308
BbrPI CACGTG 1 cut(s) 628
BbsI GAAGAC 1 cut(s) 824
Bbv12I GWGCWC 2 cut(s) 199, 1096
BbvI GCAGC 3 cut(s) 843, 913, 1633
BccI CCATC 5 cut(s) 683, 712, 839, 1256, 1399
BceAI ACGGC 1 cut(s) 1515
BciT130I CCWGG 2 cut(s) 731, 1176
BclI TGATCA 1 cut(s) 961
BcnI CCSGG 3 cut(s) 760, 761, 828
BcoDI GTCTC 4 cut(s) 94, 723, 942, 1103
BfaI CTAG 5 cut(s) 17, 48, 158, 1035, 1212
BfmI CTRYAG 2 cut(s) 540, 857
BglII AGATCT 1 cut(s) 466
BisI GCNGC 3 cut(s) 857, 927, 1647
BlsI GCNGC 3 cut(s) 858, 928, 1648
Bme1390I CCNGG 5 cut(s) 731, 760, 761, 828, 1176
Bme18I GGWCC 1 cut(s) 700
BmeT110I CYCGRG 1 cut(s) 759
BmgT120I GGNCC 3 cut(s) 166, 574, 700
BmiI GGNNCC 1 cut(s) 702
BmrFI CCNGG 5 cut(s) 731, 760, 761, 828, 1176
BmrI ACTGGG 1 cut(s) 1322
BmsI GCATC 7 cut(s) 124, 293, 337, 809, 1047, 1158, 1643
BmuI ACTGGG 1 cut(s) 1322
BpiI GAAGAC 1 cut(s) 824
BpmI CTGGAG 3 cut(s) 604, 1158, 1444
BpuMI CCSGG 3 cut(s) 760, 761, 828
BsaAI YACGTR 1 cut(s) 628
BsaI GGTCTC 1 cut(s) 723
BsaJI CCNNGG 7 cut(s) 242, 374, 678, 729, 759, 1440, 1497
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 365, 613
Bse1I ACTGG 3 cut(s) 621, 1328, 1461
Bse3DI GCAATG 4 cut(s) 168, 296, 576, 905
BseBI CCWGG 2 cut(s) 731, 1176
BseDI CCNNGG 7 cut(s) 242, 374, 678, 729, 759, 1440, 1497
BseGI GGATG 4 cut(s) 340, 473, 688, 1658
BseLI CCNNNNNNNGG 3 cut(s) 163, 365, 613
BseMI GCAATG 4 cut(s) 168, 296, 576, 905
BseMII CTCAG 1 cut(s) 546
BseNI ACTGG 3 cut(s) 621, 1328, 1461
BseRI GAGGAG 3 cut(s) 1119, 1445, 1562
BseXI GCAGC 3 cut(s) 843, 913, 1633
Bsh1236I CGCG 2 cut(s) 593, 1582
BshFI GGCC 4 cut(s) 167, 575, 617, 734
BsiHKAI GWGCWC 2 cut(s) 199, 1096
BsiHKCI CYCGRG 1 cut(s) 759
BsiSI CCGG 3 cut(s) 760, 828, 1650
BslI CCNNNNNNNGG 3 cut(s) 163, 365, 613
BsmAI GTCTC 4 cut(s) 94, 723, 942, 1103
BsnI GGCC 4 cut(s) 167, 575, 617, 734
Bso31I GGTCTC 1 cut(s) 723
BsoBI CYCGRG 1 cut(s) 759
Bsp1286I GDGCHC 2 cut(s) 199, 1096
Bsp143I GATC 7 cut(s) 466, 608, 823, 902, 961, 1522, 1543
BspACI CCGC 4 cut(s) 910, 1097, 1231, 1613
BspANI GGCC 4 cut(s) 167, 575, 617, 734
BspCNI CTCAG 1 cut(s) 547
BspFNI CGCG 2 cut(s) 593, 1582
BspHI TCATGA 1 cut(s) 996
BspLI GGNNCC 1 cut(s) 702
BspMAI CTGCAG 2 cut(s) 544, 861
BspPI GGATC 4 cut(s) 818, 910, 1530, 1551
BspQI GCTCTTC 1 cut(s) 1358
BspTNI GGTCTC 1 cut(s) 723
BsrDI GCAATG 4 cut(s) 168, 296, 576, 905
BsrI ACTGG 3 cut(s) 621, 1328, 1461
BssECI CCNNGG 7 cut(s) 242, 374, 678, 729, 759, 1440, 1497
BssMI GATC 7 cut(s) 466, 608, 823, 902, 961, 1522, 1543
BssSI CACGAG 2 cut(s) 186, 1308
BssT1I CCWWGG 3 cut(s) 242, 678, 1440
Bst2BI CACGAG 2 cut(s) 186, 1308
Bst2UI CCWGG 2 cut(s) 731, 1176
Bst4CI ACNGT 3 cut(s) 97, 600, 982
Bst6I CTCTTC 2 cut(s) 333, 1358
BstAPI GCANNNNNTGC 1 cut(s) 539
BstBAI YACGTR 1 cut(s) 628
BstC8I GCNNGC 6 cut(s) 273, 654, 861, 1321, 1431, 1580
BstDEI CTNAG 3 cut(s) 555, 971, 1268
BstDSI CCRYGG 1 cut(s) 1497
BstEII GGTNACC 1 cut(s) 767
BstF5I GGATG 4 cut(s) 340, 473, 688, 1658
BstFNI CGCG 2 cut(s) 593, 1582
BstKTI GATC 7 cut(s) 469, 611, 826, 905, 964, 1525, 1546
BstMAI GTCTC 4 cut(s) 94, 723, 942, 1103
BstMBI GATC 7 cut(s) 466, 608, 823, 902, 961, 1522, 1543
BstMWI GCNNNNNNNGC 2 cut(s) 281, 539
BstNI CCWGG 2 cut(s) 731, 1176
BstNSI RCATGY 2 cut(s) 745, 1482
BstPI GGTNACC 1 cut(s) 767
BstSCI CCNGG 5 cut(s) 729, 758, 759, 826, 1174
BstSFI CTRYAG 2 cut(s) 540, 857
BstUI CGCG 2 cut(s) 593, 1582
BstV1I GCAGC 3 cut(s) 843, 913, 1633
BstV2I GAAGAC 1 cut(s) 824
BstX2I RGATCY 2 cut(s) 466, 1522
BstXI CCANNNNNNTGG 1 cut(s) 628
BstYI RGATCY 2 cut(s) 466, 1522
BsuRI GGCC 4 cut(s) 167, 575, 617, 734
BtgI CCRYGG 1 cut(s) 1497
BtsCI GGATG 4 cut(s) 340, 473, 688, 1658
BtsIMutI CAGTG 1 cut(s) 1468
Cac8I GCNNGC 6 cut(s) 273, 654, 861, 1321, 1431, 1580
CciI TCATGA 1 cut(s) 996
Cfr13I GGNCC 3 cut(s) 166, 574, 700
Cfr9I CCCGGG 1 cut(s) 759
Csp6I GTAC 4 cut(s) 294, 356, 739, 1556
CviAII CATG 6 cut(s) 179, 742, 997, 1105, 1122, 1479
CviQI GTAC 4 cut(s) 294, 356, 739, 1556
DdeI CTNAG 3 cut(s) 555, 971, 1268
DpnI GATC 7 cut(s) 468, 610, 825, 904, 963, 1524, 1545
DpnII GATC 7 cut(s) 466, 608, 823, 902, 961, 1522, 1543
DraIII CACNNNGTG 1 cut(s) 499
Eam1104I CTCTTC 2 cut(s) 333, 1358
EarI CTCTTC 2 cut(s) 333, 1358
Ecl136II GAGCTC 1 cut(s) 1094
Eco130I CCWWGG 3 cut(s) 242, 678, 1440
Eco147I AGGCCT 1 cut(s) 617
Eco24I GRGCYC 1 cut(s) 1096
Eco31I GGTCTC 1 cut(s) 723
Eco32I GATATC 2 cut(s) 894, 987
Eco47I GGWCC 1 cut(s) 700
Eco53kI GAGCTC 1 cut(s) 1094
Eco57I CTGAAG 2 cut(s) 314, 818
Eco72I CACGTG 1 cut(s) 628
Eco88I CYCGRG 1 cut(s) 759
Eco91I GGTNACC 1 cut(s) 767
EcoICRI GAGCTC 1 cut(s) 1094
EcoO65I GGTNACC 1 cut(s) 767
EcoRII CCWGG 2 cut(s) 729, 1174
EcoRV GATATC 2 cut(s) 894, 987
EcoT14I CCWWGG 3 cut(s) 242, 678, 1440
EcoT38I GRGCYC 1 cut(s) 1096
ErhI CCWWGG 3 cut(s) 242, 678, 1440
FaeI CATG 6 cut(s) 182, 745, 1000, 1108, 1125, 1482
FalI AAGNNNNNCTT 4 cut(s) 489, 521, 1037, 1069
FatI CATG 6 cut(s) 178, 741, 996, 1104, 1121, 1478
FauI CCCGC 1 cut(s) 903
FbaI TGATCA 1 cut(s) 961
Fnu4HI GCNGC 3 cut(s) 857, 927, 1647
FokI GGATG 3 cut(s) 347, 460, 695
FriOI GRGCYC 1 cut(s) 1096
Fsp4HI GCNGC 3 cut(s) 857, 927, 1647
FspBI CTAG 5 cut(s) 17, 48, 158, 1035, 1212
GluI GCNGC 3 cut(s) 857, 927, 1647
GsuI CTGGAG 3 cut(s) 604, 1158, 1444
HaeIII GGCC 4 cut(s) 167, 575, 617, 734
HapII CCGG 3 cut(s) 760, 828, 1650
Hin1II CATG 6 cut(s) 182, 745, 1000, 1108, 1125, 1482
HinfI GANTC 4 cut(s) 502, 875, 1076, 1289
HpaII CCGG 3 cut(s) 760, 828, 1650
HphI GGTGA 5 cut(s) 137, 485, 779, 1059, 1177
Hpy166II GTNNAC 2 cut(s) 603, 1394
Hpy188I TCNGA 4 cut(s) 880, 1021, 1228, 1516
Hpy188III TCNNGA 8 cut(s) 131, 332, 439, 997, 1042, 1151, 1298, 1639
Hpy8I GTNNAC 2 cut(s) 603, 1394
Hpy99I CGWCG 1 cut(s) 593
HpyCH4III ACNGT 3 cut(s) 97, 600, 982
HpyCH4IV ACGT 3 cut(s) 588, 627, 1487
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 539
HpyF3I CTNAG 3 cut(s) 555, 971, 1268
HpySE526I ACGT 3 cut(s) 588, 627, 1487
Hsp92II CATG 6 cut(s) 182, 745, 1000, 1108, 1125, 1482
Ksp22I TGATCA 1 cut(s) 961
Kzo9I GATC 7 cut(s) 466, 608, 823, 902, 961, 1522, 1543
LguI GCTCTTC 1 cut(s) 1358
LmnI GCTCC 5 cut(s) 194, 244, 1091, 1099, 1287
Lsp1109I GCAGC 3 cut(s) 843, 913, 1633
LweI GCATC 7 cut(s) 124, 293, 337, 809, 1047, 1158, 1643
MaeI CTAG 5 cut(s) 17, 48, 158, 1035, 1212
MaeII ACGT 3 cut(s) 588, 627, 1487
MaeIII GTNAC 5 cut(s) 491, 594, 623, 767, 1384
MalI GATC 7 cut(s) 468, 610, 825, 904, 963, 1524, 1545
MboI GATC 7 cut(s) 466, 608, 823, 902, 961, 1522, 1543
MboII GAAGA 8 cut(s) 350, 392, 471, 824, 926, 1375, 1406, 1414
MflI RGATCY 2 cut(s) 466, 1522
MhlI GDGCHC 2 cut(s) 199, 1096
MlyI GAGTC 1 cut(s) 511
MmeI TCCRAC 1 cut(s) 172
MroXI GAANNNNTTC 1 cut(s) 673
MseI TTAA 3 cut(s) 485, 1002, 1275
MslI CAYNNNNRTG 1 cut(s) 1120
MspA1I CMGCKG 1 cut(s) 652
MspI CCGG 3 cut(s) 760, 828, 1650
MspR9I CCNGG 5 cut(s) 731, 760, 761, 828, 1176
MvaI CCWGG 2 cut(s) 731, 1176
MvnI CGCG 2 cut(s) 593, 1582
MwoI GCNNNNNNNGC 2 cut(s) 281, 539
NciI CCSGG 3 cut(s) 760, 761, 828
NdeII GATC 7 cut(s) 466, 608, 823, 902, 961, 1522, 1543
NlaIII CATG 6 cut(s) 182, 745, 1000, 1108, 1125, 1482
NlaIV GGNNCC 1 cut(s) 702
NmuCI GTSAC 3 cut(s) 491, 623, 767
NspI RCATGY 2 cut(s) 745, 1482
PagI TCATGA 1 cut(s) 996
PceI AGGCCT 1 cut(s) 617
PciSI GCTCTTC 1 cut(s) 1358
PdmI GAANNNNTTC 1 cut(s) 673
PfeI GAWTC 3 cut(s) 875, 1076, 1289
PkrI GCNGC 3 cut(s) 858, 928, 1648
PleI GAGTC 1 cut(s) 510
PmaCI CACGTG 1 cut(s) 628
PmlI CACGTG 1 cut(s) 628
PpsI GAGTC 1 cut(s) 510
Ppu21I YACGTR 1 cut(s) 628
PsiI TTATAA 1 cut(s) 585
Psp124BI GAGCTC 1 cut(s) 1096
Psp6I CCWGG 2 cut(s) 729, 1174
PspCI CACGTG 1 cut(s) 628
PspEI GGTNACC 1 cut(s) 767
PspGI CCWGG 2 cut(s) 729, 1174
PspN4I GGNNCC 1 cut(s) 702
PspPI GGNCC 3 cut(s) 166, 574, 700
PstI CTGCAG 2 cut(s) 544, 861
PsuI RGATCY 2 cut(s) 466, 1522
PvuII CAGCTG 1 cut(s) 652
RsaI GTAC 4 cut(s) 295, 357, 740, 1557
RsaNI GTAC 4 cut(s) 294, 356, 739, 1556
RseI CAYNNNNRTG 1 cut(s) 1120
SacI GAGCTC 1 cut(s) 1096
SapI GCTCTTC 1 cut(s) 1358
SaqAI TTAA 3 cut(s) 485, 1002, 1275
SatI GCNGC 3 cut(s) 857, 927, 1647
Sau3AI GATC 7 cut(s) 466, 608, 823, 902, 961, 1522, 1543
Sau96I GGNCC 3 cut(s) 166, 574, 700
SchI GAGTC 1 cut(s) 511
ScrFI CCNGG 5 cut(s) 731, 760, 761, 828, 1176
SduI GDGCHC 2 cut(s) 199, 1096
SfaNI GCATC 7 cut(s) 124, 293, 337, 809, 1047, 1158, 1643
SfcI CTRYAG 2 cut(s) 540, 857
SinI GGWCC 1 cut(s) 700
SmaI CCCGGG 1 cut(s) 761
SmiMI CAYNNNNRTG 1 cut(s) 1120
SrfI GCCCGGGC 1 cut(s) 761
SseBI AGGCCT 1 cut(s) 617
SsiI CCGC 4 cut(s) 910, 1097, 1231, 1613
SspI AATATT 1 cut(s) 25
SspMI CTAG 5 cut(s) 17, 48, 158, 1035, 1212
SstI GAGCTC 1 cut(s) 1096
StuI AGGCCT 1 cut(s) 617
StyD4I CCNGG 5 cut(s) 729, 758, 759, 826, 1174
StyI CCWWGG 3 cut(s) 242, 678, 1440
TaaI ACNGT 3 cut(s) 97, 600, 982
TaiI ACGT 3 cut(s) 591, 630, 1490
TaqI TCGA 1 cut(s) 1552
TatI WGTACW 2 cut(s) 293, 1555
TfiI GAWTC 3 cut(s) 875, 1076, 1289
Tru1I TTAA 3 cut(s) 485, 1002, 1275
Tru9I TTAA 3 cut(s) 485, 1002, 1275
TscAI CASTG 1 cut(s) 1468
TseFI GTSAC 3 cut(s) 491, 623, 767
TseI GCWGC 3 cut(s) 856, 926, 1646
Tsp45I GTSAC 3 cut(s) 491, 623, 767
TspGWI ACGGA 2 cut(s) 1520, 1614
TspMI CCCGGG 1 cut(s) 759
TspRI CASTG 1 cut(s) 1468
VpaK11BI GGWCC 1 cut(s) 700
XapI RAATTY 5 cut(s) 1004, 1154, 1508, 1548, 1634
XceI RCATGY 2 cut(s) 745, 1482
XmaI CCCGGG 1 cut(s) 759
XmnI GAANNNNTTC 1 cut(s) 673
XspI CTAG 5 cut(s) 17, 48, 158, 1035, 1212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.