Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008087.1

Orthogroup ID

OG0003224

Physical Location & Seq

Genomic Coordinates Forward (+)

32572 .. 44774

Gene Structure 12203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008087.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2967 bp

atgggggttgtatcgaggcgagttgtgcccgcctgcggtagcctctgtttcttctgcccctcgctgcgtgcaaggtcgaggcagccagtcaaacgctacaagaagttgctcgctgagatcttcccccgtaatcaggatgctgaacccaatgacagaaagattgggaaactttgtgaatatgctctgaagaacccattgcgaattcccaagattactgagcatctagagcaaaaatgttacaaggatttgcgaaacgaacagtttggatctgttaaagtcatactgtgcatttataggaagttactatcttcctgtaaagtgcagatgccactatttgcaagtagtctactaggaattgttcggattctcttagaacaaacccgacatgatgaaatgcggattctgggttgcaaaacacttgtcgactttataaatagccagattgatagcacacacatgttcaacctagaaggccttattcctaaactctgtgaattggctcaagaaatgggagatgatgaaagagctctacgtctacgttcagctggattgcaatcactggcttttatggtgtggttcatgggtgagcactctcatatctcgatggattttgacaatatcatatcagtgactttggaaaattacacggatatgcatactaaacctgggagtgtgaaagaagacggacaattttctgaatctcagcaccagtgggttcaagaagcgctaaaagcagaagttcatgattcatcttttccagatgttagtcagaaggttccttcattaccaaacctgacaacccctgatttggaccccacaattgatacagacaagagtccgtcttactggtcaaaggtttgcttgcgtaatatagccagattggcaaaggaagctacaacagtgcgtcgagtgcttgaaccccttttccaaaattttgatgctgcgaaccattggtccccagaaaaaccacttgcctattatgttttaatgtatctgcagtcactattagaggaatcaggagataactctcatctgttattatccatattggtcaagcacttggatcataagaatgttgtcaaacagcctcgcttgcaaactgatattgtaaatgtcaccacacaaatagcacaaagtgcaaagcagcaggcatcagtagcgattattggtgcaatatctgacctgacaaagcatttacgaaaatgcctgcaaaatcaagctgaagggtccaaccgtagtagtacagataaatggaaccaagatcttcagtcagcactagagagatgcatctcgcaactgtcaaataaggttggagatgtggggcccatacttgatatgatggctgtggtgctggagaatatcccatctagtactattgtagctagggcgacagtctctgctgtttatctaactgcaaagatggtctcttctgttccaaacatatcctatcacaaaaagccattccctgatgctctgtttcaccagttactcctagcaatggcccacctagaccatgaaacacgtgttggagcacacagtattttctctattgttcttgtgccatctctacttgttccttggctacagcagaaaatgaactctgtgcagactgtttctgggttttcatctgtcagtagattggactttggaaaggataaaagaaaagacatgggagcaaccgcaaatggagagttgagggaagaggaaagtcaaatatcagatgtttgtgaaaatcaatctggcagcttcaagagtgctttgacgggtggaagagcagaactaccttgccttcggttaagcagtcatcaagtgagtctattgctttcattaatctgggttcaggcaacatctgcagagaataccccagcaaattttgaggcgatggctcattcttataatgttgctttactgtttacccgatcaaaggcttcaagtcatatggctttagtaagatgcttccagttggcattctccatcaggactatttccttggatcgagatgggggtttgcaagaatctcgtagaaggtctctttatacgttggcatcatacatgcttatatttgcagcccgggcggggaacttcccagagctaattcccattgttaaagcatcattgatgggtcaaatggttgatcctcgtcttcagttggttgacaatatccgactgcaggcagtttcaattgactccgatatggagaagctaccctatggatcacagccagacgaagttgctgcattgaagtctcattcagcaattgaactagatgaccaattgttgaaagaaaccgtgatatcccacttcatgactaaattttccatattgtcagaggatgaattgtctagcatcaagaagcaactcttactgggttttacaccggatgatgcatttccattaggagctccactattcatggagacaccacgaccatgttctccactagcccatatagattttgctgattttgatgaggtgatgcctccaggttctttgacagatgaagaagccttccctgaacctagtggaagtcagtcagaccgcaagacatcactttccatcaacgcactagacattttaaatgttaatcagctcctggattcagttctagaaacggcccaacaagttgcaagcttcccagtctccacaatgcccgtaccttatgaccaaatgaagagccaatgtgaagcccttgtaacgggcaaacagcaaaagatggcagttcttcatagtttcaagcatcaactagaaaccaaggcgttagtgctctccaacgtaaatgaaaacaaatcccatgcttcaccacccatgggattggaatcttcagaagggtacccaaaggtcaaaaccaaggagcaaattcaagcgaaaaaccagctcgtcatatgttctcgtgagtatggacagcattcttttaaattaccaccttcaagtccttatgacaaattcttgaaagctgctggatgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

988

Amino Acids

110.1

Weight (kDa)

6.65

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05960 AT1G05960 AT1G05960 AT1G05960
fragaria_vesca	FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730
malus_domestica	MD04G1007900.v1.1
prunus_persica	Prupe.1G192000_v2.0.a1 Prupe.1G192000_v2.0.a1 Prupe.1G192000_v2.0.a1 Prupe.1G192000_v2.0.a1 Prupe.1G192000_v2.0.a1
pyrus_communis	pycom04g03470
rosa_chinensis	RchiOBHm_Chr4g0406851
rosa_laevigata	RLG00000008750
rosa_multiflora	Rmu_sc0008087.1_g000006
rosa_roxburghii	Rroxscaffold_5G00351630
rosa_rugosa	Rorug04G0074600 Rorug04G0074700 Rorug04G0074800 Rorug04G0074900 Rorug04G0075000 Rorug04G0075100
rosa_samantha	Rh4AG141400 Rh4CG148100 Rh4DG135200
rosa_wichuraiana	Rw4G011510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	431, 1896
Acc65I	GGTACC	1 cut(s)	2829
AccB1I	GGYRCC	1 cut(s)	2829
AccI	GTMKAC	3 cut(s)	346, 423, 535
AciI	CCGC	6 cut(s)	30, 36, 397, 1680, 2075, 2539
AclWI	GGATC	5 cut(s)	274, 1071, 2001, 2129, 2221
AcsI	RAATTY	6 cut(s)	201, 931, 1870, 2312, 2856, 2942
AcuI	CTGAAG	5 cut(s)	206, 1242, 1250, 2129, 2805
AcvI	CACGTG	1 cut(s)	1523
AdeI	CACNNNGTG	1 cut(s)	1136
AfaI	GTAC	4 cut(s)	1243, 1372, 2655, 2831
AfeI	AGCGCT	1 cut(s)	726
AfiI	CCNNNNNNNGG	9 cut(s)	35, 133, 808, 1498, 1924, 2076, 2170, 2695, 2807
AflIII	ACRYGT	3 cut(s)	456, 1520, 1522
AjnI	CCWGG	3 cut(s)	664, 2482, 2592
AjuI	GAANNNNNNNTTGG	2 cut(s)	1509, 1541
AloI	GAACNNNNNNTCC	4 cut(s)	909, 938, 941, 970
Alw21I	GWGCWC	5 cut(s)	529, 591, 1534, 2404, 2766
Alw26I	GTCTC	6 cut(s)	1399, 1429, 2034, 2250, 2411, 2644
AlwI	GGATC	5 cut(s)	274, 1071, 2001, 2129, 2221
AlwNI	CAGNNNCTG	2 cut(s)	1397, 2593
Ama87I	CYCGRG	1 cut(s)	2070
Aor51HI	AGCGCT	1 cut(s)	726
AoxI	GGCC	4 cut(s)	472, 1322, 1500, 2613
ApaI	GGGCCC	1 cut(s)	1326
ApeKI	GCWGC	8 cut(s)	64, 82, 941, 1144, 1743, 2066, 2234, 2954
ApoI	RAATTY	6 cut(s)	201, 931, 1870, 2312, 2856, 2942
ArsI	GACNNNNNNTTYG	4 cut(s)	405, 437, 938, 970
AseI	ATTAAT	1 cut(s)	1829
Asp718I	GGTACC	1 cut(s)	2829
AspLEI	GCGC	1 cut(s)	727
AspS9I	GGNCC	7 cut(s)	811, 954, 1227, 1322, 1323, 1501, 2614
AsuC2I	CCSGG	2 cut(s)	2071, 2072
AsuHPI	GGTGA	5 cut(s)	596, 1108, 1472, 2485, 2790
AvaI	CYCGRG	1 cut(s)	2070
AvaII	GGWCC	3 cut(s)	811, 954, 1227
BaeGI	GKGCMC	2 cut(s)	30, 1326
BanI	GGYRCC	1 cut(s)	2829
BanII	GRGCYC	3 cut(s)	529, 1326, 2404
BauI	CACGAG	1 cut(s)	2889
BbrPI	CACGTG	1 cut(s)	1523
BbsI	GAAGAC	2 cut(s)	687, 2135
Bbv12I	GWGCWC	5 cut(s)	529, 591, 1534, 2404, 2766
BbvI	GCAGC	8 cut(s)	51, 94, 928, 1156, 1755, 2078, 2221, 2941
BceAI	ACGGC	1 cut(s)	2628
BcgI	CGANNNNNNTGC	4 cut(s)	2000, 2034, 2216, 2250
BciT130I	CCWGG	3 cut(s)	666, 2484, 2594
BcnI	CCSGG	2 cut(s)	2071, 2072
BcoDI	GTCTC	6 cut(s)	1399, 1429, 2034, 2250, 2411, 2644
BfmI	CTRYAG	4 cut(s)	995, 1583, 1851, 2168
BfoI	RGCGCY	1 cut(s)	728
BglI	GCCNNNNNGGC	1 cut(s)	881
BglII	AGATCT	2 cut(s)	117, 1261
BisI	GCNGC	8 cut(s)	65, 83, 942, 1145, 1744, 2067, 2235, 2955
BlsI	GCNGC	8 cut(s)	66, 84, 943, 1146, 1745, 2068, 2236, 2956
BmcAI	AGTACT	1 cut(s)	1372
Bme1390I	CCNGG	5 cut(s)	666, 2071, 2072, 2484, 2594
Bme18I	GGWCC	3 cut(s)	811, 954, 1227
BmeT110I	CYCGRG	1 cut(s)	2070
BmgT120I	GGNCC	7 cut(s)	811, 954, 1227, 1322, 1323, 1501, 2614
BmiI	GGNNCC	8 cut(s)	777, 813, 956, 1228, 1256, 1323, 1324, 2831
BmrFI	CCNGG	5 cut(s)	666, 2071, 2072, 2484, 2594
BmrI	ACTGGG	2 cut(s)	2375, 2630
BmuI	ACTGGG	2 cut(s)	2375, 2630
BoxI	GACNNNNGTC	1 cut(s)	834
BpiI	GAAGAC	2 cut(s)	687, 2135
BpmI	CTGGAG	2 cut(s)	1373, 2466
BpuEI	CTTGAG	1 cut(s)	486
BpuMI	CCSGG	2 cut(s)	2071, 2072
BsaAI	YACGTR	1 cut(s)	1523
BsaBI	GATNNNNATC	2 cut(s)	553, 2815
BsaI	GGTCTC	2 cut(s)	1429, 2034
BsaJI	CCNNGG	7 cut(s)	665, 1577, 1989, 2070, 2751, 2805, 2847
BsaWI	WCCGGW	1 cut(s)	2377
Bsc4I	CCNNNNNNNGG	9 cut(s)	35, 133, 808, 1498, 1924, 2076, 2170, 2695, 2807
Bse1I	ACTGG	8 cut(s)	86, 564, 709, 851, 1483, 1960, 2370, 2636
Bse3DI	GCAATG	2 cut(s)	194, 1503
Bse8I	GATNNNNATC	2 cut(s)	553, 2815
BseBI	CCWGG	3 cut(s)	666, 2484, 2594
BseDI	CCNNGG	7 cut(s)	665, 1577, 1989, 2070, 2751, 2805, 2847
BseGI	GGATG	4 cut(s)	142, 2338, 2386, 2966
BseJI	GATNNNNATC	2 cut(s)	553, 2815
BseLI	CCNNNNNNNGG	9 cut(s)	35, 133, 808, 1498, 1924, 2076, 2170, 2695, 2807
BseMI	GCAATG	2 cut(s)	194, 1503
BseMII	CTCAG	3 cut(s)	105, 207, 716
BseNI	ACTGG	8 cut(s)	86, 564, 709, 851, 1483, 1960, 2370, 2636
BseSI	GKGCMC	2 cut(s)	30, 1326
BseXI	GCAGC	8 cut(s)	51, 94, 928, 1156, 1755, 2078, 2221, 2941
BseYI	CCCAGC	1 cut(s)	1864
BsgI	GTGCAG	2 cut(s)	341, 1625
BshFI	GGCC	4 cut(s)	474, 1324, 1502, 2615
BshNI	GGYRCC	1 cut(s)	2829
BsiHKAI	GWGCWC	5 cut(s)	529, 591, 1534, 2404, 2766
BsiHKCI	CYCGRG	1 cut(s)	2070
BsiSI	CCGG	2 cut(s)	2071, 2378
BslFI	GGGAC	1 cut(s)	940
BslI	CCNNNNNNNGG	9 cut(s)	35, 133, 808, 1498, 1924, 2076, 2170, 2695, 2807
BsmAI	GTCTC	6 cut(s)	1399, 1429, 2034, 2250, 2411, 2644
BsmFI	GGGAC	1 cut(s)	940
BsmI	GAATGC	2 cut(s)	1967, 2905
BsnI	GGCC	4 cut(s)	474, 1324, 1502, 2615
Bso31I	GGTCTC	2 cut(s)	1429, 2034
BsoBI	CYCGRG	1 cut(s)	2070
Bsp120I	GGGCCC	1 cut(s)	1322
Bsp1286I	GDGCHC	7 cut(s)	30, 529, 591, 1326, 1534, 2404, 2766
Bsp143I	GATC	8 cut(s)	117, 266, 1063, 1261, 1919, 1993, 2134, 2213
Bsp19I	CCATGG	1 cut(s)	2805
BspACI	CCGC	6 cut(s)	30, 36, 397, 1680, 2075, 2539
BspANI	GGCC	4 cut(s)	474, 1324, 1502, 2615
BspCNI	CTCAG	3 cut(s)	106, 208, 715
BspHI	TCATGA	2 cut(s)	742, 2304
BspLI	GGNNCC	8 cut(s)	777, 813, 956, 1228, 1256, 1323, 1324, 2831
BspMAI	CTGCAG	3 cut(s)	999, 1855, 2172
BspPI	GGATC	5 cut(s)	274, 1071, 2001, 2129, 2221
BspQI	GCTCTTC	2 cut(s)	1765, 2666
BspT107I	GGYRCC	1 cut(s)	2829
BspTNI	GGTCTC	2 cut(s)	1429, 2034
BsrDI	GCAATG	2 cut(s)	194, 1503
BsrI	ACTGG	8 cut(s)	86, 564, 709, 851, 1483, 1960, 2370, 2636
BssECI	CCNNGG	7 cut(s)	665, 1577, 1989, 2070, 2751, 2805, 2847
BssMI	GATC	8 cut(s)	117, 266, 1063, 1261, 1919, 1993, 2134, 2213
BssSI	CACGAG	1 cut(s)	2889
BssT1I	CCWWGG	5 cut(s)	1577, 1989, 2751, 2805, 2847
Bst2BI	CACGAG	1 cut(s)	2889
Bst2UI	CCWGG	3 cut(s)	666, 2484, 2594
Bst6I	CTCTTC	4 cut(s)	1432, 1695, 1765, 2666
BstAPI	GCANNNNNTGC	2 cut(s)	1136, 1850
BstBAI	YACGTR	1 cut(s)	1523
BstDEI	CTNAG	4 cut(s)	114, 216, 370, 702
BstDSI	CCRYGG	1 cut(s)	2805
BstF5I	GGATG	4 cut(s)	142, 2338, 2386, 2966
BstH2I	RGCGCY	1 cut(s)	728
BstHHI	GCGC	1 cut(s)	727
BstKTI	GATC	8 cut(s)	120, 269, 1066, 1264, 1922, 1996, 2137, 2216
BstMAI	GTCTC	6 cut(s)	1399, 1429, 2034, 2250, 2411, 2644
BstMBI	GATC	8 cut(s)	117, 266, 1063, 1261, 1919, 1993, 2134, 2213
BstNI	CCWGG	3 cut(s)	666, 2484, 2594
BstNSI	RCATGY	2 cut(s)	460, 2056
BstPAI	GACNNNNGTC	1 cut(s)	834
BstSCI	CCNGG	5 cut(s)	664, 2069, 2070, 2482, 2592
BstSFI	CTRYAG	4 cut(s)	995, 1583, 1851, 2168
BstSLI	GKGCMC	2 cut(s)	30, 1326
BstV1I	GCAGC	8 cut(s)	51, 94, 928, 1156, 1755, 2078, 2221, 2941
BstV2I	GAAGAC	2 cut(s)	687, 2135
BstX2I	RGATCY	3 cut(s)	117, 266, 1261
BstXI	CCANNNNNNTGG	1 cut(s)	2812
BstYI	RGATCY	3 cut(s)	117, 266, 1261
BsuRI	GGCC	4 cut(s)	474, 1324, 1502, 2615
BtgI	CCRYGG	1 cut(s)	2805
BtgZI	GCGATG	1 cut(s)	1895
BtsCI	GGATG	4 cut(s)	142, 2338, 2386, 2966
BtsIMutI	CAGTG	4 cut(s)	557, 633, 716, 906
CaiI	CAGNNNCTG	2 cut(s)	1397, 2593
CciI	TCATGA	2 cut(s)	742, 2304
CfoI	GCGC	1 cut(s)	727
Cfr13I	GGNCC	7 cut(s)	811, 954, 1227, 1322, 1323, 1501, 2614
Cfr9I	CCCGGG	1 cut(s)	2070
CseI	GACGC	1 cut(s)	893
Csp6I	GTAC	4 cut(s)	1242, 1371, 2654, 2830
CviQI	GTAC	4 cut(s)	1242, 1371, 2654, 2830
DdeI	CTNAG	4 cut(s)	114, 216, 370, 702
DpnI	GATC	8 cut(s)	119, 268, 1065, 1263, 1921, 1995, 2136, 2215
DpnII	GATC	8 cut(s)	117, 266, 1063, 1261, 1919, 1993, 2134, 2213
DraI	TTTAAA	2 cut(s)	2577, 2914
DraIII	CACNNNGTG	1 cut(s)	1136
Eam1104I	CTCTTC	4 cut(s)	1432, 1695, 1765, 2666
EarI	CTCTTC	4 cut(s)	1432, 1695, 1765, 2666
Ecl136II	GAGCTC	2 cut(s)	527, 2402
Eco130I	CCWWGG	5 cut(s)	1577, 1989, 2751, 2805, 2847
Eco147I	AGGCCT	1 cut(s)	474
Eco24I	GRGCYC	3 cut(s)	529, 1326, 2404
Eco31I	GGTCTC	2 cut(s)	1429, 2034
Eco32I	GATATC	1 cut(s)	2295
Eco47I	GGWCC	3 cut(s)	811, 954, 1227
Eco47III	AGCGCT	1 cut(s)	726
Eco53kI	GAGCTC	2 cut(s)	527, 2402
Eco57I	CTGAAG	5 cut(s)	206, 1242, 1250, 2129, 2805
Eco72I	CACGTG	1 cut(s)	1523
Eco88I	CYCGRG	1 cut(s)	2070
EcoICRI	GAGCTC	2 cut(s)	527, 2402
EcoO109I	RGGNCCY	1 cut(s)	1322
EcoRI	GAATTC	1 cut(s)	201
EcoRII	CCWGG	3 cut(s)	664, 2482, 2592
EcoRV	GATATC	1 cut(s)	2295
EcoT14I	CCWWGG	5 cut(s)	1577, 1989, 2751, 2805, 2847
EcoT22I	ATGCAT	3 cut(s)	657, 1289, 2389
EcoT38I	GRGCYC	3 cut(s)	529, 1326, 2404
ErhI	CCWWGG	5 cut(s)	1577, 1989, 2751, 2805, 2847
FalI	AAGNNNNNCTT	4 cut(s)	845, 877, 2345, 2377
FaqI	GGGAC	1 cut(s)	940
FauI	CCCGC	2 cut(s)	37, 2068
FauNDI	CATATG	2 cut(s)	1938, 2882
FblI	GTMKAC	3 cut(s)	346, 423, 535
Fnu4HI	GCNGC	8 cut(s)	65, 83, 942, 1145, 1744, 2067, 2235, 2955
FokI	GGATG	3 cut(s)	149, 2345, 2393
FriOI	GRGCYC	3 cut(s)	529, 1326, 2404
Fsp4HI	GCNGC	8 cut(s)	65, 83, 942, 1145, 1744, 2067, 2235, 2955
GlaI	GCGC	1 cut(s)	726
GluI	GCNGC	8 cut(s)	65, 83, 942, 1145, 1744, 2067, 2235, 2955
GsaI	CCCAGC	1 cut(s)	1868
GsuI	CTGGAG	2 cut(s)	1373, 2466
HaeII	RGCGCY	1 cut(s)	728
HaeIII	GGCC	4 cut(s)	474, 1324, 1502, 2615
HapII	CCGG	2 cut(s)	2071, 2378
HgaI	GACGC	1 cut(s)	893
HhaI	GCGC	1 cut(s)	727
Hin6I	GCGC	1 cut(s)	725
HinP1I	GCGC	1 cut(s)	725
HincII	GTYRAC	2 cut(s)	424, 2155
HindII	GTYRAC	2 cut(s)	424, 2155
HindIII	AAGCTT	1 cut(s)	2629
HpaII	CCGG	2 cut(s)	2071, 2378
HphI	GGTGA	5 cut(s)	596, 1108, 1472, 2485, 2790
Hpy166II	GTNNAC	5 cut(s)	347, 424, 536, 1914, 2155
Hpy8I	GTNNAC	5 cut(s)	347, 424, 536, 1914, 2155
Hpy99I	CGWCG	1 cut(s)	909
HpyAV	CCTTC	9 cut(s)	464, 766, 789, 1217, 1799, 2019, 2518, 2819, 2934
HpyCH4IV	ACGT	5 cut(s)	532, 538, 1522, 2039, 2772
HpyF3I	CTNAG	4 cut(s)	114, 216, 370, 702
HpySE526I	ACGT	5 cut(s)	532, 538, 1522, 2039, 2772
HspAI	GCGC	1 cut(s)	725
KpnI	GGTACC	1 cut(s)	2833
Kzo9I	GATC	8 cut(s)	117, 266, 1063, 1261, 1919, 1993, 2134, 2213
LguI	GCTCTTC	2 cut(s)	1765, 2666
LmnI	GCTCC	6 cut(s)	1529, 1673, 2399, 2407, 2595, 2851
Lsp1109I	GCAGC	8 cut(s)	51, 94, 928, 1156, 1755, 2078, 2221, 2941
MaeII	ACGT	5 cut(s)	532, 538, 1522, 2039, 2772
MaeIII	GTNAC	7 cut(s)	236, 300, 628, 999, 1114, 1485, 2692
MalI	GATC	8 cut(s)	119, 268, 1065, 1263, 1921, 1995, 2136, 2215
MboI	GATC	8 cut(s)	117, 266, 1063, 1261, 1919, 1993, 2134, 2213
MfeI	CAATTG	4 cut(s)	819, 2181, 2256, 2273
MflI	RGATCY	3 cut(s)	117, 266, 1261
MhlI	GDGCHC	7 cut(s)	30, 529, 591, 1326, 1534, 2404, 2766
MlyI	GAGTC	3 cut(s)	844, 1822, 2180
MmeI	TCCRAC	5 cut(s)	1254, 1291, 1507, 2188, 2793
Mph1103I	ATGCAT	3 cut(s)	657, 1289, 2389
MseI	TTAA	9 cut(s)	273, 986, 1796, 1829, 2106, 2576, 2583, 2913, 2965
MslI	CAYNNNNRTG	5 cut(s)	455, 626, 650, 1071, 2428
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	2 cut(s)	2071, 2378
MspR9I	CCNGG	5 cut(s)	666, 2071, 2072, 2484, 2594
MunI	CAATTG	4 cut(s)	819, 2181, 2256, 2273
Mva1269I	GAATGC	2 cut(s)	1967, 2905
MvaI	CCWGG	3 cut(s)	666, 2484, 2594
NciI	CCSGG	2 cut(s)	2071, 2072
NcoI	CCATGG	1 cut(s)	2805
NdeI	CATATG	2 cut(s)	1938, 2882
NdeII	GATC	8 cut(s)	117, 266, 1063, 1261, 1919, 1993, 2134, 2213
NlaIV	GGNNCC	8 cut(s)	777, 813, 956, 1228, 1256, 1323, 1324, 2831
NmuCI	GTSAC	3 cut(s)	628, 999, 1114
NsiI	ATGCAT	3 cut(s)	657, 1289, 2389
NspI	RCATGY	2 cut(s)	460, 2056
PagI	TCATGA	2 cut(s)	742, 2304
PceI	AGGCCT	1 cut(s)	474
PciI	ACATGT	1 cut(s)	456
PciSI	GCTCTTC	2 cut(s)	1765, 2666
PctI	GAATGC	2 cut(s)	1967, 2905
PfeI	GAWTC	8 cut(s)	364, 400, 698, 746, 1013, 2015, 2597, 2816
PfoI	TCCNGGA	1 cut(s)	2592
PkrI	GCNGC	8 cut(s)	66, 84, 943, 1146, 1745, 2068, 2236, 2956
PleI	GAGTC	3 cut(s)	843, 1821, 2180
PmaCI	CACGTG	1 cut(s)	1523
PmlI	CACGTG	1 cut(s)	1523
PpsI	GAGTC	3 cut(s)	843, 1821, 2180
Ppu21I	YACGTR	1 cut(s)	1523
PscI	ACATGT	1 cut(s)	456
PshAI	GACNNNNGTC	1 cut(s)	834
PshBI	ATTAAT	1 cut(s)	1829
PsiI	TTATAA	2 cut(s)	431, 1896
Psp124BI	GAGCTC	2 cut(s)	529, 2404
Psp6I	CCWGG	3 cut(s)	664, 2482, 2592
PspCI	CACGTG	1 cut(s)	1523
PspFI	CCCAGC	1 cut(s)	1864
PspGI	CCWGG	3 cut(s)	664, 2482, 2592
PspN4I	GGNNCC	8 cut(s)	777, 813, 956, 1228, 1256, 1323, 1324, 2831
PspOMI	GGGCCC	1 cut(s)	1322
PspPI	GGNCC	7 cut(s)	811, 954, 1227, 1322, 1323, 1501, 2614
PstI	CTGCAG	3 cut(s)	999, 1855, 2172
PstNI	CAGNNNCTG	2 cut(s)	1397, 2593
PsuI	RGATCY	3 cut(s)	117, 266, 1261
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	4 cut(s)	1243, 1372, 2655, 2831
RsaNI	GTAC	4 cut(s)	1242, 1371, 2654, 2830
RseI	CAYNNNNRTG	5 cut(s)	455, 626, 650, 1071, 2428
SacI	GAGCTC	2 cut(s)	529, 2404
SalI	GTCGAC	1 cut(s)	422
SapI	GCTCTTC	2 cut(s)	1765, 2666
SaqAI	TTAA	9 cut(s)	273, 986, 1796, 1829, 2106, 2576, 2583, 2913, 2965
SatI	GCNGC	8 cut(s)	65, 83, 942, 1145, 1744, 2067, 2235, 2955
Sau3AI	GATC	8 cut(s)	117, 266, 1063, 1261, 1919, 1993, 2134, 2213
Sau96I	GGNCC	7 cut(s)	811, 954, 1227, 1322, 1323, 1501, 2614
ScaI	AGTACT	1 cut(s)	1372
SchI	GAGTC	3 cut(s)	844, 1822, 2180
ScrFI	CCNGG	5 cut(s)	666, 2071, 2072, 2484, 2594
SduI	GDGCHC	7 cut(s)	30, 529, 591, 1326, 1534, 2404, 2766
SfcI	CTRYAG	4 cut(s)	995, 1583, 1851, 2168
SinI	GGWCC	3 cut(s)	811, 954, 1227
SmaI	CCCGGG	1 cut(s)	2072
SmiMI	CAYNNNNRTG	5 cut(s)	455, 626, 650, 1071, 2428
SmlI	CTYRAG	1 cut(s)	501
SmoI	CTYRAG	1 cut(s)	501
SrfI	GCCCGGGC	1 cut(s)	2072
SseBI	AGGCCT	1 cut(s)	474
SsiI	CCGC	6 cut(s)	30, 36, 397, 1680, 2075, 2539
SstI	GAGCTC	2 cut(s)	529, 2404
StuI	AGGCCT	1 cut(s)	474
StyD4I	CCNGG	5 cut(s)	664, 2069, 2070, 2482, 2592
StyI	CCWWGG	5 cut(s)	1577, 1989, 2751, 2805, 2847
TaiI	ACGT	5 cut(s)	535, 541, 1525, 2042, 2775
TaqI	TCGA	6 cut(s)	14, 77, 423, 602, 907, 1996
TatI	WGTACW	2 cut(s)	1241, 1370
TfiI	GAWTC	8 cut(s)	364, 400, 698, 746, 1013, 2015, 2597, 2816
Tru1I	TTAA	9 cut(s)	273, 986, 1796, 1829, 2106, 2576, 2583, 2913, 2965
Tru9I	TTAA	9 cut(s)	273, 986, 1796, 1829, 2106, 2576, 2583, 2913, 2965
TscAI	CASTG	4 cut(s)	564, 633, 716, 906
TseFI	GTSAC	3 cut(s)	628, 999, 1114
TseI	GCWGC	8 cut(s)	64, 82, 941, 1144, 1743, 2066, 2234, 2954
Tsp45I	GTSAC	3 cut(s)	628, 999, 1114
TspGWI	ACGGA	3 cut(s)	662, 699, 828
TspMI	CCCGGG	1 cut(s)	2070
TspRI	CASTG	4 cut(s)	564, 633, 716, 906
VpaK11BI	GGWCC	3 cut(s)	811, 954, 1227
VspI	ATTAAT	1 cut(s)	1829
XapI	RAATTY	6 cut(s)	201, 931, 1870, 2312, 2856, 2942
XbaI	TCTAGA	2 cut(s)	223, 2605
XceI	RCATGY	2 cut(s)	460, 2056
XmaI	CCCGGG	1 cut(s)	2070
XmiI	GTMKAC	3 cut(s)	346, 423, 535
ZrmI	AGTACT	1 cut(s)	1372
Zsp2I	ATGCAT	3 cut(s)	657, 1289, 2389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.