Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003224

Physical Location & Seq

Genomic Coordinates Forward (+)

11576043 .. 11577082

Gene Structure 1040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0074700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGATCTTTCTGCCAGAGGGAGATCGATCCGATCTGAATCGATCGGTGGTGCCAAACCCATTGCAGATCTGGTATCTAGCCAATGGGAGTCGTCATCTCCGGTCCGGCGAGTTACAGCGTATCCACGACGGTGTTGCGGCGGCGGTGATGGCTCGATCGGAGGATGGTGGTGGGTGTGCGACGGTGGGAATGCGGCTGGAACTCTTCCGGGCTTGGTGGGGCGTTTCCACATTTTTGGTCGGGTCTTGGGCCTGGGTCATGGTGTTGGGCCCAATTAGGGCTGTATTGCTTTTAATTTTCAGTTTGTTTGGTTCTTTAGTTGCAATTTATTTTTTGCTTTTAATAAGTCCTTACCATGTTTTGGTTTGGAAATGTGGGCTTCGTCTTGGCCTACGCACCTTGCGTGCCATGTCTGCTCTAGGTAGGAGGCGAGTTCCTTGCTTTGTCAAATGGTCGCAGCCTCCTAGTGACAGAATGAAACTAAGTGTCACCGGGTTATATTTTCGGTGGCAGCATACTAGGAAAGCTGATAGTATTGGTTACTCATGGCTCCGAGTGGGCATTATCTTTCCGGTTTGTCACCACAATTGTAAAGCGAATGGAGTAGCCCGTAGAACACTCTTCACTAAAGGGTGCATGTTAGAATGCATATTCATAGATGAGACGCCTGTTATTATCTCAGGTGGTTCTCTTGAGGCTTATTGTAATTTGGGGTTAAGGCTCTATGTCCCCCCCCCCTGTGTATTCTGTGGTTTCATTAATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

28.56

Weight (kDa)

9.72

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05960 AT1G05960 AT1G05960 AT1G05960
fragaria_vesca	FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730
malus_domestica	MD04G1007900.v1.1
prunus_persica	Prupe.1G192000_v2.0.a1 Prupe.1G192000_v2.0.a1 Prupe.1G192000_v2.0.a1 Prupe.1G192000_v2.0.a1 Prupe.1G192000_v2.0.a1
pyrus_communis	pycom04g03470
rosa_chinensis	RchiOBHm_Chr4g0406851
rosa_laevigata	RLG00000008750
rosa_multiflora	Rmu_sc0008087.1_g000006
rosa_roxburghii	Rroxscaffold_5G00351630
rosa_rugosa	Rorug04G0074600 Rorug04G0074700 Rorug04G0074800 Rorug04G0074900 Rorug04G0075000 Rorug04G0075100
rosa_samantha	Rh4AG141400 Rh4CG148100 Rh4DG135200
rosa_wichuraiana	Rw4G011510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	49
AccB7I	CCANNNNNTGG	1 cut(s)	361
AciI	CCGC	4 cut(s)	137, 140, 143, 193
AclWI	GGATC	1 cut(s)	21
AcyI	GRCGYC	1 cut(s)	665
AfiI	CCNNNNNNNGG	2 cut(s)	277, 361
AjnI	CCWGG	1 cut(s)	251
AleI	CACNNNNGTG	1 cut(s)	129
AluBI	AGCT	1 cut(s)	527
AluI	AGCT	1 cut(s)	527
Alw26I	GTCTC	1 cut(s)	656
AlwI	GGATC	1 cut(s)	21
AoxI	GGCC	3 cut(s)	249, 268, 388
ApaI	GGGCCC	1 cut(s)	272
ApeKI	GCWGC	2 cut(s)	457, 511
AseI	ATTAAT	1 cut(s)	759
AspS9I	GGNCC	4 cut(s)	102, 249, 268, 269
AsuC2I	CCSGG	2 cut(s)	209, 493
AsuHPI	GGTGA	3 cut(s)	157, 481, 572
AvaII	GGWCC	1 cut(s)	102
BaeGI	GKGCMC	1 cut(s)	272
BanI	GGYRCC	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	469, 523
BccI	CCATC	2 cut(s)	142, 158
BcgI	CGANNNNNNTGC	4 cut(s)	116, 150, 420, 454
BciT130I	CCWGG	1 cut(s)	253
BciVI	GTATCC	1 cut(s)	131
BcnI	CCSGG	2 cut(s)	209, 493
BcoDI	GTCTC	1 cut(s)	656
BfaI	CTAG	4 cut(s)	77, 419, 465, 519
BfuI	GTATCC	1 cut(s)	131
BglII	AGATCT	1 cut(s)	66
BisI	GCNGC	5 cut(s)	138, 141, 194, 458, 512
BlsI	GCNGC	5 cut(s)	139, 142, 195, 459, 513
Bme1390I	CCNGG	3 cut(s)	209, 253, 493
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	4 cut(s)	102, 249, 268, 269
BmiI	GGNNCC	3 cut(s)	51, 270, 551
BmrFI	CCNGG	3 cut(s)	209, 253, 493
BpuEI	CTTGAG	1 cut(s)	713
BpuMI	CCSGG	2 cut(s)	209, 493
Bsa29I	ATCGAT	2 cut(s)	25, 40
BsaBI	GATNNNNATC	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	665
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	2 cut(s)	99, 571
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 361
Bse3DI	GCAATG	1 cut(s)	59
Bse8I	GATNNNNATC	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	253
BseCI	ATCGAT	2 cut(s)	25, 40
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	169
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	2 cut(s)	277, 361
BseMI	GCAATG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	693
BseSI	GKGCMC	1 cut(s)	272
BseXI	GCAGC	2 cut(s)	469, 523
Bsh1285I	CGRYCG	2 cut(s)	44, 158
BshFI	GGCC	3 cut(s)	251, 270, 390
BshNI	GGYRCC	1 cut(s)	49
BshVI	ATCGAT	2 cut(s)	25, 40
BsiEI	CGRYCG	2 cut(s)	44, 158
BsiSI	CCGG	5 cut(s)	100, 105, 208, 492, 572
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	2 cut(s)	277, 361
BsmAI	GTCTC	1 cut(s)	656
BsmBI	CGTCTC	1 cut(s)	656
BsmFI	GGGAC	1 cut(s)	713
BsmI	GAATGC	2 cut(s)	195, 650
BsnI	GGCC	3 cut(s)	251, 270, 390
Bsp120I	GGGCCC	1 cut(s)	268
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	7 cut(s)	3, 22, 26, 31, 41, 66, 155
BspACI	CCGC	4 cut(s)	137, 140, 143, 193
BspANI	GGCC	3 cut(s)	251, 270, 390
BspCNI	CTCAG	1 cut(s)	692
BspDI	ATCGAT	2 cut(s)	25, 40
BspLI	GGNNCC	3 cut(s)	51, 270, 551
BspPI	GGATC	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	7 cut(s)	3, 22, 26, 31, 41, 66, 155
BssNI	GRCGYC	1 cut(s)	665
Bst2UI	CCWGG	1 cut(s)	253
Bst4CI	ACNGT	2 cut(s)	131, 184
Bst6I	CTCTTC	2 cut(s)	209, 626
BstACI	GRCGYC	1 cut(s)	665
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	2 cut(s)	482, 679
BstF5I	GGATG	1 cut(s)	169
BstKTI	GATC	7 cut(s)	6, 25, 29, 34, 44, 69, 158
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	7 cut(s)	3, 22, 26, 31, 41, 66, 155
BstMCI	CGRYCG	2 cut(s)	44, 158
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 413
BstNI	CCWGG	1 cut(s)	253
BstNSI	RCATGY	1 cut(s)	640
BstSCI	CCNGG	3 cut(s)	207, 251, 491
BstSLI	GKGCMC	1 cut(s)	272
BstV1I	GCAGC	2 cut(s)	469, 523
BstX2I	RGATCY	1 cut(s)	66
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	66
Bsu15I	ATCGAT	2 cut(s)	25, 40
BsuI	GTATCC	1 cut(s)	131
BsuRI	GGCC	3 cut(s)	251, 270, 390
BsuTUI	ATCGAT	2 cut(s)	25, 40
BtsCI	GGATG	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	405
Cfr13I	GGNCC	4 cut(s)	102, 249, 268, 269
ClaI	ATCGAT	2 cut(s)	25, 40
CpoI	CGGWCCG	1 cut(s)	102
CseI	GACGC	1 cut(s)	673
CspI	CGGWCCG	1 cut(s)	102
CviAII	CATG	5 cut(s)	259, 356, 409, 546, 637
DdeI	CTNAG	2 cut(s)	482, 679
DpnI	GATC	7 cut(s)	5, 24, 28, 33, 43, 68, 157
DpnII	GATC	7 cut(s)	3, 22, 26, 31, 41, 66, 155
Eam1104I	CTCTTC	2 cut(s)	209, 626
EarI	CTCTTC	2 cut(s)	209, 626
Eco24I	GRGCYC	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	251
EcoT22I	ATGCAT	1 cut(s)	650
EcoT38I	GRGCYC	1 cut(s)	272
Esp3I	CGTCTC	1 cut(s)	656
FaeI	CATG	5 cut(s)	262, 359, 412, 549, 640
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	5 cut(s)	258, 355, 408, 545, 636
Fnu4HI	GCNGC	5 cut(s)	138, 141, 194, 458, 512
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	5 cut(s)	138, 141, 194, 458, 512
FspBI	CTAG	4 cut(s)	77, 419, 465, 519
GluI	GCNGC	5 cut(s)	138, 141, 194, 458, 512
HaeIII	GGCC	3 cut(s)	251, 270, 390
HapII	CCGG	5 cut(s)	100, 105, 208, 492, 572
HgaI	GACGC	1 cut(s)	673
Hin1I	GRCGYC	1 cut(s)	665
Hin1II	CATG	5 cut(s)	262, 359, 412, 549, 640
HinfI	GANTC	2 cut(s)	37, 88
HpaII	CCGG	5 cut(s)	100, 105, 208, 492, 572
HphI	GGTGA	3 cut(s)	157, 481, 572
Hpy188I	TCNGA	4 cut(s)	31, 36, 160, 554
Hpy188III	TCNNGA	1 cut(s)	692
Hpy99I	CGWCG	2 cut(s)	131, 184
HpyCH4III	ACNGT	2 cut(s)	131, 184
HpyCH4V	TGCA	4 cut(s)	64, 323, 636, 648
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 413
HpyF3I	CTNAG	2 cut(s)	482, 679
Hsp92I	GRCGYC	1 cut(s)	665
Hsp92II	CATG	5 cut(s)	262, 359, 412, 549, 640
Kzo9I	GATC	7 cut(s)	3, 22, 26, 31, 41, 66, 155
LmnI	GCTCC	1 cut(s)	555
Lsp1109I	GCAGC	2 cut(s)	469, 523
MaeI	CTAG	4 cut(s)	77, 419, 465, 519
MaeIII	GTNAC	5 cut(s)	111, 467, 487, 539, 578
MalI	GATC	7 cut(s)	5, 24, 28, 33, 43, 68, 157
MboI	GATC	7 cut(s)	3, 22, 26, 31, 41, 66, 155
MboII	GAAGA	2 cut(s)	196, 613
MfeI	CAATTG	1 cut(s)	586
MflI	RGATCY	1 cut(s)	66
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	5 cut(s)	273, 294, 324, 586, 706
MlyI	GAGTC	1 cut(s)	97
MnlI	CCTC	5 cut(s)	10, 154, 420, 471, 688
Mph1103I	ATGCAT	1 cut(s)	650
MseI	TTAA	5 cut(s)	293, 341, 716, 759, 766
MslI	CAYNNNNRTG	1 cut(s)	129
MspI	CCGG	5 cut(s)	100, 105, 208, 492, 572
MspR9I	CCNGG	3 cut(s)	209, 253, 493
MunI	CAATTG	1 cut(s)	586
Mva1269I	GAATGC	2 cut(s)	195, 650
MvaI	CCWGG	1 cut(s)	253
MwoI	GCNNNNNNNGC	2 cut(s)	149, 413
NciI	CCSGG	2 cut(s)	209, 493
NdeII	GATC	7 cut(s)	3, 22, 26, 31, 41, 66, 155
NlaIII	CATG	5 cut(s)	262, 359, 412, 549, 640
NlaIV	GGNNCC	3 cut(s)	51, 270, 551
NmuCI	GTSAC	3 cut(s)	467, 487, 578
NsiI	ATGCAT	1 cut(s)	650
NspI	RCATGY	1 cut(s)	640
OliI	CACNNNNGTG	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	400
PctI	GAATGC	2 cut(s)	195, 650
PfeI	GAWTC	1 cut(s)	37
PflMI	CCANNNNNTGG	1 cut(s)	361
PkrI	GCNGC	5 cut(s)	139, 142, 195, 459, 513
Ple19I	CGATCG	2 cut(s)	44, 158
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
PshBI	ATTAAT	1 cut(s)	759
Psp6I	CCWGG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	3 cut(s)	51, 270, 551
PspOMI	GGGCCC	1 cut(s)	268
PspPI	GGNCC	4 cut(s)	102, 249, 268, 269
PsuI	RGATCY	1 cut(s)	66
PvuI	CGATCG	2 cut(s)	44, 158
RseI	CAYNNNNRTG	1 cut(s)	129
Rsr2I	CGGWCCG	1 cut(s)	102
RsrII	CGGWCCG	1 cut(s)	102
SaqAI	TTAA	5 cut(s)	293, 341, 716, 759, 766
SatI	GCNGC	5 cut(s)	138, 141, 194, 458, 512
Sau3AI	GATC	7 cut(s)	3, 22, 26, 31, 41, 66, 155
Sau96I	GGNCC	4 cut(s)	102, 249, 268, 269
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	3 cut(s)	209, 253, 493
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	4 cut(s)	401, 424, 529, 685
SinI	GGWCC	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	692
SmoI	CTYRAG	1 cut(s)	692
Sse9I	AATT	5 cut(s)	273, 294, 324, 586, 706
SsiI	CCGC	4 cut(s)	137, 140, 143, 193
SspMI	CTAG	4 cut(s)	77, 419, 465, 519
StyD4I	CCNGG	3 cut(s)	207, 251, 491
TaaI	ACNGT	2 cut(s)	131, 184
TaqI	TCGA	3 cut(s)	25, 40, 154
TasI	AATT	5 cut(s)	273, 294, 324, 586, 706
TauI	GCSGC	3 cut(s)	140, 143, 196
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	5 cut(s)	293, 341, 716, 759, 766
Tru9I	TTAA	5 cut(s)	293, 341, 716, 759, 766
TseFI	GTSAC	3 cut(s)	467, 487, 578
TseI	GCWGC	2 cut(s)	457, 511
Tsp45I	GTSAC	3 cut(s)	467, 487, 578
TspDTI	ATGAA	3 cut(s)	491, 643, 745
Van91I	CCANNNNNTGG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	102
VspI	ATTAAT	1 cut(s)	759
XceI	RCATGY	1 cut(s)	640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	66
XspI	CTAG	4 cut(s)	77, 419, 465, 519
Zsp2I	ATGCAT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.