Rorug04G0074800

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003224
Physical Location & Seq
Reverse (-)
11583142 .. 11584004
863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0074800.1

Sequence Viewer

Length: 726 bp
ATGTACAAAACATTCAGTTCTCCATATCCTCATCAACTTCTACATAAGCATCCTCCAAAATTCTCAATCCTTCGTCCTAAAAATGAAGAGTTTGATGTGTTTAGCGGGAGTGTACTCATACTTTTCGTTCAGACTGCAGTTTTGCCAACCAAAGCCAATATCGTTGACAAAACATGTAGTAGAACACCACACCCTTCGGTATGTCTCTCGTCACTCAAATCCAACCCTCGAAGCGCCCAAGCAGACATATACGGCTTAGCTGTCATAATGATCGATGTGGTTAAAGCAAAGTCCACAGCGACTCTAAACAAAATCAACCAATTGCTCAAGCAAAGCCCCGGAGATAAATCCTTGAAAGATTGCGCTGAAAGTTACACGGCAATTGTAGAGTATTTCCCAACAGTATCAGGCAATCAAGTTGGGAAGAGCTATGTTTGCTTTGGAAGGGAAGTCTCAACTAAGTTTGGCACTATCGGCTGGGCCCCATCGGTACTCCCATGTACTATGCCATGGGCCGGGTTCACGACCCACCATGGCGGGGCCCATTTGGGATGCCACCCCGGGCACCCAGGGCCCTGGGCAAGGCCAACACAGCCCAACTATTTACACAACAGGAGGACTGATATGGCATCAGAAGAACAACTAGTGTCCCACATCGAAGATGGGGGAGACTTCCTTCACATGCTCGAGTATAAAGGCATTAGCACAACCACCTTTTACGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

26.55

Weight (kDa)

8.83

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 54 - 133 4e-15 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 564
AciI CCGC 2 cut(s) 105, 537
AcsI RAATTY 1 cut(s) 59
AfaI GTAC 4 cut(s) 5, 114, 492, 502
AfiI CCNNNNNNNGG 4 cut(s) 515, 538, 582, 720
AflIII ACRYGT 1 cut(s) 173
AgsI TTSAA 1 cut(s) 355
AhlI ACTAGT 1 cut(s) 643
AjnI CCWGG 2 cut(s) 568, 575
AluBI AGCT 2 cut(s) 260, 429
AluI AGCT 2 cut(s) 260, 429
Alw26I GTCTC 3 cut(s) 209, 457, 663
Ama87I CYCGRG 2 cut(s) 560, 686
AoxI GGCC 5 cut(s) 480, 513, 540, 572, 584
ApaI GGGCCC 3 cut(s) 484, 544, 576
ApoI RAATTY 1 cut(s) 59
ArsI GACNNNNNNTTYG 2 cut(s) 124, 156
AspLEI GCGC 2 cut(s) 236, 365
AspS9I GGNCC 7 cut(s) 480, 481, 513, 540, 541, 572, 573
AsuC2I CCSGG 4 cut(s) 339, 517, 561, 562
AvaI CYCGRG 2 cut(s) 560, 686
BaeGI GKGCMC 4 cut(s) 484, 544, 567, 576
BanI GGYRCC 1 cut(s) 564
BanII GRGCYC 3 cut(s) 484, 544, 576
BccI CCATC 2 cut(s) 493, 656
BceAI ACGGC 2 cut(s) 268, 393
BciT130I CCWGG 2 cut(s) 570, 577
BcnI CCSGG 4 cut(s) 339, 517, 561, 562
BcoDI GTCTC 3 cut(s) 209, 457, 663
BcuI ACTAGT 1 cut(s) 643
BfaI CTAG 1 cut(s) 644
BfmI CTRYAG 1 cut(s) 135
BfoI RGCGCY 1 cut(s) 237
BlpI GCTNAGC 1 cut(s) 256
Bme1390I CCNGG 6 cut(s) 339, 517, 561, 562, 570, 577
BmeT110I CYCGRG 2 cut(s) 560, 686
BmgT120I GGNCC 7 cut(s) 480, 481, 513, 540, 541, 572, 573
BmiI GGNNCC 6 cut(s) 482, 483, 541, 542, 566, 574
BmrFI CCNGG 6 cut(s) 339, 517, 561, 562, 570, 577
BmsI GCATC 3 cut(s) 58, 542, 638
Bpu1102I GCTNAGC 1 cut(s) 256
BpuEI CTTGAG 1 cut(s) 311
BpuMI CCSGG 4 cut(s) 339, 517, 561, 562
Bsa29I ATCGAT 1 cut(s) 273
BsaJI CCNNGG 9 cut(s) 337, 509, 532, 559, 560, 568, 569, 575, 576
Bsc4I CCNNNNNNNGG 4 cut(s) 515, 538, 582, 720
BseBI CCWGG 2 cut(s) 570, 577
BseCI ATCGAT 1 cut(s) 273
BseDI CCNNGG 9 cut(s) 337, 509, 532, 559, 560, 568, 569, 575, 576
BseGI GGATG 2 cut(s) 49, 557
BseLI CCNNNNNNNGG 4 cut(s) 515, 538, 582, 720
BseSI GKGCMC 4 cut(s) 484, 544, 567, 576
BseYI CCCAGC 1 cut(s) 477
BshFI GGCC 5 cut(s) 482, 515, 542, 574, 586
BshNI GGYRCC 1 cut(s) 564
BshVI ATCGAT 1 cut(s) 273
BsiHKCI CYCGRG 2 cut(s) 560, 686
BsiSI CCGG 3 cut(s) 339, 516, 561
BslFI GGGAC 1 cut(s) 634
BslI CCNNNNNNNGG 4 cut(s) 515, 538, 582, 720
BsmAI GTCTC 3 cut(s) 209, 457, 663
BsmFI GGGAC 1 cut(s) 634
BsnI GGCC 5 cut(s) 482, 515, 542, 574, 586
BsoBI CYCGRG 2 cut(s) 560, 686
Bsp120I GGGCCC 3 cut(s) 480, 540, 572
Bsp1286I GDGCHC 4 cut(s) 484, 544, 567, 576
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 270
Bsp1720I GCTNAGC 1 cut(s) 256
Bsp19I CCATGG 2 cut(s) 509, 532
BspACI CCGC 2 cut(s) 105, 537
BspANI GGCC 5 cut(s) 482, 515, 542, 574, 586
BspDI ATCGAT 1 cut(s) 273
BspLI GGNNCC 6 cut(s) 482, 483, 541, 542, 566, 574
BspMAI CTGCAG 1 cut(s) 139
BspQI GCTCTTC 1 cut(s) 419
BspT107I GGYRCC 1 cut(s) 564
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 9 cut(s) 337, 509, 532, 559, 560, 568, 569, 575, 576
BssMI GATC 1 cut(s) 270
BssT1I CCWWGG 2 cut(s) 509, 532
Bst2UI CCWGG 2 cut(s) 570, 577
Bst4CI ACNGT 1 cut(s) 403
Bst6I CTCTTC 2 cut(s) 81, 419
BstAUI TGTACA 1 cut(s) 3
BstDEI CTNAG 2 cut(s) 256, 459
BstDSI CCRYGG 2 cut(s) 509, 532
BstENI CCTNNNNNAGG 1 cut(s) 580
BstF5I GGATG 2 cut(s) 49, 557
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 2 cut(s) 236, 365
BstKTI GATC 1 cut(s) 273
BstMAI GTCTC 3 cut(s) 209, 457, 663
BstMBI GATC 1 cut(s) 270
BstMWI GCNNNNNNNGC 4 cut(s) 435, 474, 571, 592
BstNI CCWGG 2 cut(s) 570, 577
BstNSI RCATGY 2 cut(s) 177, 685
BstSCI CCNGG 6 cut(s) 337, 515, 559, 560, 568, 575
BstSFI CTRYAG 1 cut(s) 135
BstSLI GKGCMC 4 cut(s) 484, 544, 567, 576
BstXI CCANNNNNNTGG 1 cut(s) 576
Bsu15I ATCGAT 1 cut(s) 273
BsuRI GGCC 5 cut(s) 482, 515, 542, 574, 586
BsuTUI ATCGAT 1 cut(s) 273
BtgI CCRYGG 2 cut(s) 509, 532
BtsCI GGATG 2 cut(s) 49, 557
CfoI GCGC 2 cut(s) 236, 365
Cfr13I GGNCC 7 cut(s) 480, 481, 513, 540, 541, 572, 573
Cfr9I CCCGGG 1 cut(s) 560
ClaI ATCGAT 1 cut(s) 273
Csp6I GTAC 4 cut(s) 4, 113, 491, 501
CviAII CATG 5 cut(s) 174, 498, 510, 533, 682
CviQI GTAC 4 cut(s) 4, 113, 491, 501
DdeI CTNAG 2 cut(s) 256, 459
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
Eam1104I CTCTTC 2 cut(s) 81, 419
EarI CTCTTC 2 cut(s) 81, 419
Eco130I CCWWGG 2 cut(s) 509, 532
Eco24I GRGCYC 3 cut(s) 484, 544, 576
Eco88I CYCGRG 2 cut(s) 560, 686
EcoNI CCTNNNNNAGG 1 cut(s) 580
EcoO109I RGGNCCY 4 cut(s) 481, 540, 572, 573
EcoRII CCWGG 2 cut(s) 568, 575
EcoT14I CCWWGG 2 cut(s) 509, 532
EcoT38I GRGCYC 3 cut(s) 484, 544, 576
ErhI CCWWGG 2 cut(s) 509, 532
FaeI CATG 5 cut(s) 177, 501, 513, 536, 685
FaqI GGGAC 1 cut(s) 634
FatI CATG 5 cut(s) 173, 497, 509, 532, 681
FauI CCCGC 2 cut(s) 98, 530
FokI GGATG 2 cut(s) 36, 564
FriOI GRGCYC 3 cut(s) 484, 544, 576
FspBI CTAG 1 cut(s) 644
GlaI GCGC 2 cut(s) 235, 364
GsaI CCCAGC 1 cut(s) 481
HaeII RGCGCY 1 cut(s) 237
HaeIII GGCC 5 cut(s) 482, 515, 542, 574, 586
HapII CCGG 3 cut(s) 339, 516, 561
HhaI GCGC 2 cut(s) 236, 365
Hin1II CATG 5 cut(s) 177, 501, 513, 536, 685
Hin6I GCGC 2 cut(s) 234, 363
HinP1I GCGC 2 cut(s) 234, 363
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 1 cut(s) 301
HpaII CCGG 3 cut(s) 339, 516, 561
Hpy166II GTNNAC 4 cut(s) 113, 166, 294, 522
Hpy188I TCNGA 2 cut(s) 132, 634
Hpy188III TCNNGA 1 cut(s) 523
Hpy8I GTNNAC 4 cut(s) 113, 166, 294, 522
HpyAV CCTTC 4 cut(s) 80, 204, 438, 686
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4V TGCA 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 4 cut(s) 435, 474, 571, 592
HpyF3I CTNAG 2 cut(s) 256, 459
Hsp92II CATG 5 cut(s) 177, 501, 513, 536, 685
HspAI GCGC 2 cut(s) 234, 363
Kzo9I GATC 1 cut(s) 270
LguI GCTCTTC 1 cut(s) 419
LweI GCATC 3 cut(s) 58, 542, 638
MaeI CTAG 1 cut(s) 644
MaeIII GTNAC 2 cut(s) 210, 371
MalI GATC 1 cut(s) 272
MboI GATC 1 cut(s) 270
MboII GAAGA 4 cut(s) 98, 436, 647, 671
MfeI CAATTG 2 cut(s) 320, 381
MhlI GDGCHC 4 cut(s) 484, 544, 567, 576
MluCI AATT 3 cut(s) 59, 320, 381
MlyI GAGTC 1 cut(s) 295
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 4 cut(s) 39, 63, 237, 609
MseI TTAA 1 cut(s) 282
MspI CCGG 3 cut(s) 339, 516, 561
MspR9I CCNGG 6 cut(s) 339, 517, 561, 562, 570, 577
MunI CAATTG 2 cut(s) 320, 381
MvaI CCWGG 2 cut(s) 570, 577
MwoI GCNNNNNNNGC 4 cut(s) 435, 474, 571, 592
NciI CCSGG 4 cut(s) 339, 517, 561, 562
NcoI CCATGG 2 cut(s) 509, 532
NdeII GATC 1 cut(s) 270
NlaIII CATG 5 cut(s) 177, 501, 513, 536, 685
NlaIV GGNNCC 6 cut(s) 482, 483, 541, 542, 566, 574
NmuCI GTSAC 1 cut(s) 210
NspI RCATGY 2 cut(s) 177, 685
PaeR7I CTCGAG 1 cut(s) 686
PasI CCCWGGG 2 cut(s) 569, 576
PciI ACATGT 1 cut(s) 173
PciSI GCTCTTC 1 cut(s) 419
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PscI ACATGT 1 cut(s) 173
Psp6I CCWGG 2 cut(s) 568, 575
PspFI CCCAGC 1 cut(s) 477
PspGI CCWGG 2 cut(s) 568, 575
PspN4I GGNNCC 6 cut(s) 482, 483, 541, 542, 566, 574
PspOMI GGGCCC 3 cut(s) 480, 540, 572
PspPI GGNCC 7 cut(s) 480, 481, 513, 540, 541, 572, 573
PspXI VCTCGAGB 1 cut(s) 686
PstI CTGCAG 1 cut(s) 139
RsaI GTAC 4 cut(s) 5, 114, 492, 502
RsaNI GTAC 4 cut(s) 4, 113, 491, 501
SapI GCTCTTC 1 cut(s) 419
SaqAI TTAA 1 cut(s) 282
Sau3AI GATC 1 cut(s) 270
Sau96I GGNCC 7 cut(s) 480, 481, 513, 540, 541, 572, 573
SchI GAGTC 1 cut(s) 295
ScrFI CCNGG 6 cut(s) 339, 517, 561, 562, 570, 577
SduI GDGCHC 4 cut(s) 484, 544, 567, 576
SetI ASST 3 cut(s) 262, 431, 716
SfaNI GCATC 3 cut(s) 58, 542, 638
SfcI CTRYAG 1 cut(s) 135
Sfr274I CTCGAG 1 cut(s) 686
SlaI CTCGAG 1 cut(s) 686
SmaI CCCGGG 1 cut(s) 562
SmlI CTYRAG 2 cut(s) 326, 686
SmoI CTYRAG 2 cut(s) 326, 686
SpeI ACTAGT 1 cut(s) 643
Sse9I AATT 3 cut(s) 59, 320, 381
SsiI CCGC 2 cut(s) 105, 537
SspMI CTAG 1 cut(s) 644
StyD4I CCNGG 6 cut(s) 337, 515, 559, 560, 568, 575
StyI CCWWGG 2 cut(s) 509, 532
TaaI ACNGT 1 cut(s) 403
TaqI TCGA 4 cut(s) 229, 273, 657, 687
TasI AATT 3 cut(s) 59, 320, 381
TatI WGTACW 3 cut(s) 3, 112, 500
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TseFI GTSAC 1 cut(s) 210
Tsp45I GTSAC 1 cut(s) 210
TspDTI ATGAA 1 cut(s) 99
TspMI CCCGGG 1 cut(s) 560
XagI CCTNNNNNAGG 1 cut(s) 580
XapI RAATTY 1 cut(s) 59
XceI RCATGY 2 cut(s) 177, 685
XcmI CCANNNNNNNNNTGG 1 cut(s) 659
XhoI CTCGAG 1 cut(s) 686
XmaI CCCGGG 1 cut(s) 560
XspI CTAG 1 cut(s) 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.