Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003224

Physical Location & Seq

Genomic Coordinates Reverse (-)

11587024 .. 11590324

Gene Structure 3301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0074900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGCTGAAGTTCAAGCTCTCGTCAATGAACTCGCCACCAAGCTCCGGAAACGGAAGGTGGAGGGTTCACGAGAGACTGCTCGGCTGACGGCGGAGTTGTTACGGACGGTAATATCCCAGCAGAGGGTGACTTCAGCCGCCCTTGTTGAGGTCGTCAGAGATGTTGGTCAGCAGCTTATTGCTGCTAACCCTGTTGAGCTTGCTGTTGGGAACATTGTGAGGCGTGTTCTGCGCATCATTAGGGATGGGGATCTTTCACCGGAAGTTGGAGGATTGACTTTAGTCTCCCAGGGTGATGATGGAGATATTGTTGAGGAAGATGATAAACCATTTCTATTATCTGATGCTATTTCCCAAACAATTCTCCATCCACCTTCCTTGGTTGCACAGCTTGAAAGCAAACCCAACTTGGTTTGCCACTTTGAGGGAAAAGCAGATAAAACTCCGAGTAGCTGGCAATTTAAGCACCAGATCATTGAGGGAGTTAATGATCTCATTGAGGATATAAATACTTGCCATGAACTGATCGCAGACCAGGCATTGGAGCTTATACATCAAAATGAGGTGATACTAACCTTAGGTCACTCGAAGACTGTCAAGAAGTTCCTCTATGCTGCAAAGGAGAAGAAAAGATCTTTCCAGGTCTATGTGGCCGAGGGTGCTCCTAAGTTTGTCCACGATCTGAATCTATTCTGTTGTTATTTATTCTTCTTCTTCTTCTTCTTCTATACATTTTTGTTGCTTACTTGGTGGTTTCTTAGGCATTTGGGGCATGTGCTTGCAAACGAGTTAACTGAAAAGCATTTGCAAACAACCGTCATTCCTGACTCTTCAGTGTTTGCCATGATTTCAAGAGTTAACATGGTCATAGTCGGGGTTCATGCTGTGATGGCCAATGGTGGGGTCATAGCCCCTGTTGGGATGAATATGGTTGCACTTGCTGCAAAAAGGCATGCTGTTCCATTTGTTGTGGTTGGTGGCACTCATAAGTTATGTCCACTGTTTCCTAACAATCCAGAGGTTTTGCTGAACGATATGAGATGTCCATCTGAGCTATTATCTTTTGGGGACTTCTCAGATTGCATGGATTTTAGTGTTGGCAGTGGATCTCCTCTTTTGCATGTTGTTAATCCTGCATTTGACTATGTGCCACCCGAGCTAGTCAGTCTTTTTGTTACTGAAATAGGGGGCTATCATCCATCATACATCTATAGGCTCATTTCGGATTATTACTCTGCTGACGATATAGTTCTGCAACAAAACCCTGCTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

424

Amino Acids

47.1

Weight (kDa)

5.59

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	19 - 224	1.1e-21	Initiation factor 2 subunit family
IF-2B	PF01008	257 - 400	3.9e-33	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05960 AT1G05960 AT1G05960 AT1G05960
fragaria_vesca	FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730 FvH4_4g10730
malus_domestica	MD04G1007900.v1.1
prunus_persica	Prupe.1G192000_v2.0.a1 Prupe.1G192000_v2.0.a1 Prupe.1G192000_v2.0.a1 Prupe.1G192000_v2.0.a1 Prupe.1G192000_v2.0.a1
pyrus_communis	pycom04g03470
rosa_chinensis	RchiOBHm_Chr4g0406851
rosa_laevigata	RLG00000008750
rosa_multiflora	Rmu_sc0008087.1_g000006
rosa_roxburghii	Rroxscaffold_5G00351630
rosa_rugosa	Rorug04G0074600 Rorug04G0074700 Rorug04G0074800 Rorug04G0074900 Rorug04G0075000 Rorug04G0075100
rosa_samantha	Rh4AG141400 Rh4CG148100 Rh4DG135200
rosa_wichuraiana	Rw4G011510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	233
AccB7I	CCANNNNNTGG	1 cut(s)	541
AccIII	TCCGGA	1 cut(s)	45
AciI	CCGC	2 cut(s)	92, 138
AclWI	GGATC	2 cut(s)	258, 1114
AcoI	YGGCCR	2 cut(s)	651, 891
AcuI	CTGAAG	3 cut(s)	27, 117, 816
AfiI	CCNNNNNNNGG	9 cut(s)	45, 123, 124, 148, 266, 424, 541, 900, 918
AgsI	TTSAA	3 cut(s)	14, 395, 852
AjnI	CCWGG	3 cut(s)	288, 534, 639
AluBI	AGCT	9 cut(s)	17, 43, 175, 199, 391, 453, 547, 1054, 1159
AluI	AGCT	9 cut(s)	17, 43, 175, 199, 391, 453, 547, 1054, 1159
Alw21I	GWGCWC	1 cut(s)	664
Alw26I	GTCTC	2 cut(s)	68, 289
AlwI	GGATC	2 cut(s)	258, 1114
Ama87I	CYCGRG	1 cut(s)	1154
Aor13HI	TCCGGA	1 cut(s)	45
AoxI	GGCC	2 cut(s)	651, 891
ApeKI	GCWGC	4 cut(s)	172, 182, 614, 941
Asp700I	GAANNNNTTC	1 cut(s)	689
AspLEI	GCGC	1 cut(s)	234
AsuHPI	GGTGA	4 cut(s)	139, 249, 305, 577
AvaI	CYCGRG	1 cut(s)	1154
AxyI	CCTNAGG	1 cut(s)	577
BalI	TGGCCA	1 cut(s)	893
BauI	CACGAG	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	596
Bbv12I	GWGCWC	1 cut(s)	664
BbvI	GCAGC	4 cut(s)	169, 184, 601, 928
BccI	CCATC	6 cut(s)	239, 293, 375, 883, 1054, 1207
BceAI	ACGGC	1 cut(s)	105
BciT130I	CCWGG	3 cut(s)	290, 536, 641
BcoDI	GTCTC	2 cut(s)	68, 289
BfaI	CTAG	1 cut(s)	1160
BfmI	CTRYAG	1 cut(s)	1210
BglII	AGATCT	1 cut(s)	632
BisI	GCNGC	5 cut(s)	138, 173, 183, 615, 942
BlsI	GCNGC	5 cut(s)	139, 174, 184, 616, 943
Bme1390I	CCNGG	3 cut(s)	290, 536, 641
BmeT110I	CYCGRG	1 cut(s)	1154
BmrFI	CCNGG	3 cut(s)	290, 536, 641
BmsI	GCATC	2 cut(s)	243, 334
BoxI	GACNNNNGTC	1 cut(s)	281
BpiI	GAAGAC	1 cut(s)	596
BsaBI	GATNNNNATC	3 cut(s)	249, 684, 1045
BsaJI	CCNNGG	4 cut(s)	288, 289, 378, 654
BsaWI	WCCGGW	2 cut(s)	45, 259
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	9 cut(s)	45, 123, 124, 148, 266, 424, 541, 900, 918
Bse21I	CCTNAGG	1 cut(s)	577
Bse8I	GATNNNNATC	3 cut(s)	249, 684, 1045
BseAI	TCCGGA	1 cut(s)	45
BseBI	CCWGG	3 cut(s)	290, 536, 641
BseDI	CCNNGG	4 cut(s)	288, 289, 378, 654
BseGI	GGATG	4 cut(s)	250, 367, 927, 1195
BseJI	GATNNNNATC	3 cut(s)	249, 684, 1045
BseLI	CCNNNNNNNGG	9 cut(s)	45, 123, 124, 148, 266, 424, 541, 900, 918
BseMII	CTCAG	2 cut(s)	1041, 1089
BseRI	GAGGAG	1 cut(s)	1101
BseXI	GCAGC	4 cut(s)	169, 184, 601, 928
BseYI	CCCAGC	1 cut(s)	117
BshFI	GGCC	2 cut(s)	653, 893
BsiHKAI	GWGCWC	1 cut(s)	664
BsiHKCI	CYCGRG	1 cut(s)	1154
BsiSI	CCGG	2 cut(s)	46, 260
BslFI	GGGAC	1 cut(s)	1082
BslI	CCNNNNNNNGG	9 cut(s)	45, 123, 124, 148, 266, 424, 541, 900, 918
BsmAI	GTCTC	2 cut(s)	68, 289
BsmFI	GGGAC	1 cut(s)	1082
BsnI	GGCC	2 cut(s)	653, 893
BsoBI	CYCGRG	1 cut(s)	1154
Bsp1286I	GDGCHC	1 cut(s)	664
Bsp13I	TCCGGA	1 cut(s)	45
Bsp143I	GATC	7 cut(s)	250, 471, 490, 525, 632, 679, 1106
BspACI	CCGC	2 cut(s)	92, 138
BspANI	GGCC	2 cut(s)	653, 893
BspCNI	CTCAG	2 cut(s)	1042, 1088
BspEI	TCCGGA	1 cut(s)	45
BspPI	GGATC	2 cut(s)	258, 1114
BssECI	CCNNGG	4 cut(s)	288, 289, 378, 654
BssMI	GATC	7 cut(s)	250, 471, 490, 525, 632, 679, 1106
BssSI	CACGAG	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	378
Bst2BI	CACGAG	1 cut(s)	69
Bst2UI	CCWGG	3 cut(s)	290, 536, 641
Bst4CI	ACNGT	4 cut(s)	109, 595, 817, 1002
Bst6I	CTCTTC	1 cut(s)	835
BstAPI	GCANNNNNTGC	1 cut(s)	941
BstC8I	GCNNGC	4 cut(s)	201, 455, 780, 954
BstDEI	CTNAG	5 cut(s)	577, 666, 758, 1050, 1075
BstENI	CCTNNNNNAGG	1 cut(s)	146
BstF5I	GGATG	4 cut(s)	250, 367, 927, 1195
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	7 cut(s)	253, 474, 493, 528, 635, 682, 1109
BstMAI	GTCTC	2 cut(s)	68, 289
BstMBI	GATC	7 cut(s)	250, 471, 490, 525, 632, 679, 1106
BstMWI	GCNNNNNNNGC	8 cut(s)	229, 463, 536, 659, 769, 890, 941, 1156
BstNI	CCWGG	3 cut(s)	290, 536, 641
BstNSI	RCATGY	3 cut(s)	776, 956, 1124
BstPAI	GACNNNNGTC	1 cut(s)	281
BstSCI	CCNGG	3 cut(s)	288, 534, 639
BstSFI	CTRYAG	1 cut(s)	1210
BstV1I	GCAGC	4 cut(s)	169, 184, 601, 928
BstV2I	GAAGAC	1 cut(s)	596
BstX2I	RGATCY	3 cut(s)	250, 632, 1106
BstYI	RGATCY	3 cut(s)	250, 632, 1106
Bsu36I	CCTNAGG	1 cut(s)	577
BsuRI	GGCC	2 cut(s)	653, 893
BtsCI	GGATG	4 cut(s)	250, 367, 927, 1195
BtsI	GCAGTG	1 cut(s)	1108
BtsIMutI	CAGTG	3 cut(s)	840, 998, 1108
Cac8I	GCNNGC	4 cut(s)	201, 455, 780, 954
CfoI	GCGC	1 cut(s)	234
CspCI	CAANNNNNGTGG	2 cut(s)	360, 395
CviAII	CATG	8 cut(s)	518, 773, 844, 862, 881, 953, 1084, 1121
DdeI	CTNAG	5 cut(s)	577, 666, 758, 1050, 1075
DpnI	GATC	7 cut(s)	252, 473, 492, 527, 634, 681, 1108
DpnII	GATC	7 cut(s)	250, 471, 490, 525, 632, 679, 1106
EaeI	YGGCCR	2 cut(s)	651, 891
Eam1104I	CTCTTC	1 cut(s)	835
EarI	CTCTTC	1 cut(s)	835
EciI	GGCGGA	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	378
Eco57I	CTGAAG	3 cut(s)	27, 117, 816
Eco81I	CCTNAGG	1 cut(s)	577
Eco88I	CYCGRG	1 cut(s)	1154
EcoNI	CCTNNNNNAGG	1 cut(s)	146
EcoRII	CCWGG	3 cut(s)	288, 534, 639
EcoT14I	CCWWGG	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	8 cut(s)	521, 776, 847, 865, 884, 956, 1087, 1124
FaqI	GGGAC	1 cut(s)	1082
FatI	CATG	8 cut(s)	517, 772, 843, 861, 880, 952, 1083, 1120
Fnu4HI	GCNGC	5 cut(s)	138, 173, 183, 615, 942
FokI	GGATG	4 cut(s)	257, 354, 934, 1182
Fsp4HI	GCNGC	5 cut(s)	138, 173, 183, 615, 942
FspBI	CTAG	1 cut(s)	1160
FspI	TGCGCA	1 cut(s)	233
GlaI	GCGC	1 cut(s)	233
GluI	GCNGC	5 cut(s)	138, 173, 183, 615, 942
GsaI	CCCAGC	1 cut(s)	121
HaeIII	GGCC	2 cut(s)	653, 893
HapII	CCGG	2 cut(s)	46, 260
HhaI	GCGC	1 cut(s)	234
Hin1II	CATG	8 cut(s)	521, 776, 847, 865, 884, 956, 1087, 1124
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HincII	GTYRAC	2 cut(s)	792, 859
HindII	GTYRAC	2 cut(s)	792, 859
HinfI	GANTC	2 cut(s)	685, 827
HpaI	GTTAAC	2 cut(s)	792, 859
HpaII	CCGG	2 cut(s)	46, 260
HphI	GGTGA	4 cut(s)	139, 249, 305, 577
Hpy166II	GTNNAC	5 cut(s)	68, 676, 792, 859, 998
Hpy188I	TCNGA	7 cut(s)	158, 343, 447, 684, 1051, 1078, 1225
Hpy188III	TCNNGA	7 cut(s)	46, 69, 598, 824, 852, 1016, 1272
Hpy8I	GTNNAC	5 cut(s)	68, 676, 792, 859, 998
HpyAV	CCTTC	2 cut(s)	49, 384
HpyCH4III	ACNGT	4 cut(s)	109, 595, 817, 1002
HpyF10VI	GCNNNNNNNGC	8 cut(s)	229, 463, 536, 659, 769, 890, 941, 1156
HpyF3I	CTNAG	5 cut(s)	577, 666, 758, 1050, 1075
Hsp92II	CATG	8 cut(s)	521, 776, 847, 865, 884, 956, 1087, 1124
HspAI	GCGC	1 cut(s)	232
Kpn2I	TCCGGA	1 cut(s)	45
KspAI	GTTAAC	2 cut(s)	792, 859
Kzo9I	GATC	7 cut(s)	250, 471, 490, 525, 632, 679, 1106
LmnI	GCTCC	3 cut(s)	48, 544, 667
Lsp1109I	GCAGC	4 cut(s)	169, 184, 601, 928
LweI	GCATC	2 cut(s)	243, 334
MaeI	CTAG	1 cut(s)	1160
MaeIII	GTNAC	4 cut(s)	99, 127, 581, 1174
MalI	GATC	7 cut(s)	252, 473, 492, 527, 634, 681, 1108
MboI	GATC	7 cut(s)	250, 471, 490, 525, 632, 679, 1106
MflI	RGATCY	3 cut(s)	250, 632, 1106
MhlI	GDGCHC	1 cut(s)	664
MlsI	TGGCCA	1 cut(s)	893
MluCI	AATT	2 cut(s)	360, 458
MluNI	TGGCCA	1 cut(s)	893
MlyI	GAGTC	1 cut(s)	821
MmeI	TCCRAC	1 cut(s)	247
Mox20I	TGGCCA	1 cut(s)	893
MroI	TCCGGA	1 cut(s)	45
MroXI	GAANNNNTTC	1 cut(s)	689
MscI	TGGCCA	1 cut(s)	893
MseI	TTAA	5 cut(s)	462, 486, 791, 858, 1128
MslI	CAYNNNNRTG	1 cut(s)	558
Msp20I	TGGCCA	1 cut(s)	893
MspI	CCGG	2 cut(s)	46, 260
MspR9I	CCNGG	3 cut(s)	290, 536, 641
MvaI	CCWGG	3 cut(s)	290, 536, 641
MwoI	GCNNNNNNNGC	8 cut(s)	229, 463, 536, 659, 769, 890, 941, 1156
NdeII	GATC	7 cut(s)	250, 471, 490, 525, 632, 679, 1106
NlaIII	CATG	8 cut(s)	521, 776, 847, 865, 884, 956, 1087, 1124
NmeAIII	GCCGAG	2 cut(s)	61, 679
NmuCI	GTSAC	2 cut(s)	127, 581
NsbI	TGCGCA	1 cut(s)	233
NspI	RCATGY	3 cut(s)	776, 956, 1124
PaeI	GCATGC	1 cut(s)	956
PasI	CCCWGGG	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	689
PfeI	GAWTC	1 cut(s)	685
PflMI	CCANNNNNTGG	1 cut(s)	541
PkrI	GCNGC	5 cut(s)	139, 174, 184, 616, 943
PleI	GAGTC	1 cut(s)	821
PpsI	GAGTC	1 cut(s)	821
PshAI	GACNNNNGTC	1 cut(s)	281
Psp6I	CCWGG	3 cut(s)	288, 534, 639
PspFI	CCCAGC	1 cut(s)	117
PspGI	CCWGG	3 cut(s)	288, 534, 639
PsuI	RGATCY	3 cut(s)	250, 632, 1106
RseI	CAYNNNNRTG	1 cut(s)	558
SaqAI	TTAA	5 cut(s)	462, 486, 791, 858, 1128
SatI	GCNGC	5 cut(s)	138, 173, 183, 615, 942
Sau3AI	GATC	7 cut(s)	250, 471, 490, 525, 632, 679, 1106
SchI	GAGTC	1 cut(s)	821
ScrFI	CCNGG	3 cut(s)	290, 536, 641
SduI	GDGCHC	1 cut(s)	664
SfaNI	GCATC	2 cut(s)	243, 334
SfcI	CTRYAG	1 cut(s)	1210
SmiMI	CAYNNNNRTG	1 cut(s)	558
SphI	GCATGC	1 cut(s)	956
Sse9I	AATT	2 cut(s)	360, 458
SsiI	CCGC	2 cut(s)	92, 138
SspMI	CTAG	1 cut(s)	1160
StyD4I	CCNGG	3 cut(s)	288, 534, 639
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	4 cut(s)	109, 595, 817, 1002
TaqI	TCGA	1 cut(s)	587
TasI	AATT	2 cut(s)	360, 458
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	685
Tru1I	TTAA	5 cut(s)	462, 486, 791, 858, 1128
Tru9I	TTAA	5 cut(s)	462, 486, 791, 858, 1128
TscAI	CASTG	3 cut(s)	840, 1005, 1108
TseFI	GTSAC	2 cut(s)	127, 581
TseI	GCWGC	4 cut(s)	172, 182, 614, 941
Tsp45I	GTSAC	2 cut(s)	127, 581
TspDTI	ATGAA	4 cut(s)	42, 534, 869, 938
TspGWI	ACGGA	2 cut(s)	67, 118
TspRI	CASTG	3 cut(s)	840, 1005, 1108
Van91I	CCANNNNNTGG	1 cut(s)	541
XagI	CCTNNNNNAGG	1 cut(s)	146
XceI	RCATGY	3 cut(s)	776, 956, 1124
XcmI	CCANNNNNNNNNTGG	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	689
XspI	CTAG	1 cut(s)	1160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.