Rorug04G0074600

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003224
Physical Location & Seq
Reverse (-)
11564335 .. 11566733
2399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0074600.1

Sequence Viewer

Length: 642 bp
ATGGTTCAAACCCTAGTCCGAATCATAGGCAGGGCCACCGCCGACATTACCGCTCGCAACCTCATCCCCAAACGCCTCACCTCCACCTCCACAATCACCAAACCGCCTTCCATCCCCTCTCTCATCCTCGGCCGTCGATCTCTCACCCACGCCGTCCGTCCCTTTCCCGCCACGCGTTTCACTCCTATTCGCTGCTGCGGGTCGAACTCCTCCCTTAACTCCGGTTCGAACTTCAGCGAGTCTCGGCCGATCGACACCCTCCCCGTCTTAGATCACTTTCGCATCTGCATGCTCTATGAGATGATGGACTATGAAGCCACGAAGCAGGAGAAGGTCGATTTCTATATTAAGACAGCCGCTAAAGTTCTCGGAAGCGAGGAAGAAGCGAAGAAGAAGATCACCAATGTGTACAGGATGAGTTTTGGCGTTAACGTTGATTTGGAGACCGCCTTAAAGCTTCGAGGTTTGCCGGAAGTTGATTGGGTGTACCGGGAATCGTGTTATCTTGATGGGAGTCAAGACTATGGGGGTGAGTTGGTTGTGAATGGAGAAATTGTTCAAAGGTCTCCTGAAAATCAGAGGAGGCTGGAGGCGGCCCTCAAGAGAATAGGACATAGTCCTGACGTCCAGAAAATGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.94

Weight (kDa)

9.19

Isoelectric Point (pI)

46.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORF_dom PF21864 103 - 178 1.2e-14 Multiple organellar RNA editing factor 1, MORF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 627
AccBSI CCGCTC 1 cut(s) 53
AccII CGCG 1 cut(s) 175
AciI CCGC 8 cut(s) 39, 51, 104, 168, 198, 357, 447, 593
AclI AACGTT 1 cut(s) 432
AcoI YGGCCR 2 cut(s) 130, 245
AcuI CTGAAG 1 cut(s) 217
AcyI GRCGYC 1 cut(s) 624
AfaI GTAC 2 cut(s) 410, 488
AflIII ACRYGT 1 cut(s) 173
AgsI TTSAA 2 cut(s) 8, 560
AleI CACNNNNGTG 1 cut(s) 404
AloI GAACNNNNNNTCC 2 cut(s) 540, 572
AluBI AGCT 1 cut(s) 457
AluI AGCT 1 cut(s) 457
Alw26I GTCTC 3 cut(s) 246, 437, 570
AoxI GGCC 4 cut(s) 33, 130, 245, 594
ApeKI GCWGC 2 cut(s) 192, 195
Asp700I GAANNNNTTC 1 cut(s) 555
AspS9I GGNCC 2 cut(s) 33, 595
AsuC2I CCSGG 1 cut(s) 491
AsuHPI GGTGA 5 cut(s) 70, 88, 136, 391, 542
AsuII TTCGAA 1 cut(s) 227
BbvI GCAGC 2 cut(s) 179, 182
BccI CCATC 3 cut(s) 119, 298, 503
BceAI ACGGC 2 cut(s) 117, 137
BcnI CCSGG 1 cut(s) 491
BcoDI GTCTC 3 cut(s) 246, 437, 570
BfaI CTAG 1 cut(s) 14
BisI GCNGC 4 cut(s) 193, 196, 357, 594
BlsI GCNGC 4 cut(s) 194, 197, 358, 595
Bme1390I CCNGG 1 cut(s) 491
BmgT120I GGNCC 2 cut(s) 33, 595
BmrFI CCNGG 1 cut(s) 491
BmsI GCATC 1 cut(s) 291
BpmI CTGGAG 1 cut(s) 608
Bpu14I TTCGAA 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 584
BpuMI CCSGG 1 cut(s) 491
BsaHI GRCGYC 1 cut(s) 624
BsaI GGTCTC 2 cut(s) 437, 570
BsaJI CCNNGG 1 cut(s) 127
BsaWI WCCGGW 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 540, 570
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 4 cut(s) 63, 111, 123, 420
BseRI GAGGAG 2 cut(s) 199, 595
BseX3I CGGCCG 2 cut(s) 130, 245
BseXI GCAGC 2 cut(s) 179, 182
Bsh1236I CGCG 1 cut(s) 175
Bsh1285I CGRYCG 3 cut(s) 133, 248, 252
BshFI GGCC 4 cut(s) 35, 132, 247, 596
BsiEI CGRYCG 3 cut(s) 133, 248, 252
BsiSI CCGG 3 cut(s) 222, 470, 490
BslFI GGGAC 1 cut(s) 144
BsmAI GTCTC 3 cut(s) 246, 437, 570
BsmFI GGGAC 1 cut(s) 144
BsnI GGCC 4 cut(s) 35, 132, 247, 596
Bso31I GGTCTC 2 cut(s) 437, 570
Bsp119I TTCGAA 1 cut(s) 227
Bsp1407I TGTACA 1 cut(s) 408
Bsp143I GATC 4 cut(s) 137, 249, 271, 396
BspACI CCGC 8 cut(s) 39, 51, 104, 168, 198, 357, 447, 593
BspANI GGCC 4 cut(s) 35, 132, 247, 596
BspFNI CGCG 1 cut(s) 175
BspT104I TTCGAA 1 cut(s) 227
BspTNI GGTCTC 2 cut(s) 437, 570
BsrBI CCGCTC 1 cut(s) 53
BsrGI TGTACA 1 cut(s) 408
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 4 cut(s) 137, 249, 271, 396
BssNI GRCGYC 1 cut(s) 624
BstACI GRCGYC 1 cut(s) 624
BstAUI TGTACA 1 cut(s) 408
BstBI TTCGAA 1 cut(s) 227
BstC8I GCNNGC 2 cut(s) 55, 290
BstDEI CTNAG 1 cut(s) 268
BstF5I GGATG 4 cut(s) 63, 111, 123, 420
BstFNI CGCG 1 cut(s) 175
BstKTI GATC 4 cut(s) 140, 252, 274, 399
BstMAI GTCTC 3 cut(s) 246, 437, 570
BstMBI GATC 4 cut(s) 137, 249, 271, 396
BstMCI CGRYCG 3 cut(s) 133, 248, 252
BstNSI RCATGY 1 cut(s) 292
BstSCI CCNGG 1 cut(s) 489
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 2 cut(s) 179, 182
BstZI CGGCCG 2 cut(s) 130, 245
BsuRI GGCC 4 cut(s) 35, 132, 247, 596
BtsCI GGATG 4 cut(s) 63, 111, 123, 420
Cac8I GCNNGC 2 cut(s) 55, 290
Cfr13I GGNCC 2 cut(s) 33, 595
Csp6I GTAC 2 cut(s) 409, 487
CviAII CATG 2 cut(s) 289, 639
CviJI RGCY 8 cut(s) 35, 132, 247, 317, 356, 457, 586, 596
CviKI_1 RGCY 8 cut(s) 35, 132, 247, 317, 356, 457, 586, 596
CviQI GTAC 2 cut(s) 409, 487
DdeI CTNAG 1 cut(s) 268
DpnI GATC 4 cut(s) 139, 251, 273, 398
DpnII GATC 4 cut(s) 137, 249, 271, 396
EaeI YGGCCR 2 cut(s) 130, 245
EagI CGGCCG 2 cut(s) 130, 245
EclXI CGGCCG 2 cut(s) 130, 245
Eco31I GGTCTC 2 cut(s) 437, 570
Eco52I CGGCCG 2 cut(s) 130, 245
Eco57I CTGAAG 1 cut(s) 217
FaeI CATG 2 cut(s) 292, 642
FaiI YATR 8 cut(s) 26, 290, 297, 312, 345, 525, 615, 640
FaqI GGGAC 1 cut(s) 144
FatI CATG 2 cut(s) 288, 638
FauI CCCGC 2 cut(s) 175, 191
Fnu4HI GCNGC 4 cut(s) 193, 196, 357, 594
FokI GGATG 4 cut(s) 50, 98, 110, 427
Fsp4HI GCNGC 4 cut(s) 193, 196, 357, 594
FspBI CTAG 1 cut(s) 14
GluI GCNGC 4 cut(s) 193, 196, 357, 594
GsuI CTGGAG 1 cut(s) 608
HaeIII GGCC 4 cut(s) 35, 132, 247, 596
HapII CCGG 3 cut(s) 222, 470, 490
Hin1I GRCGYC 1 cut(s) 624
Hin1II CATG 2 cut(s) 292, 642
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 4 cut(s) 21, 239, 494, 514
HpaI GTTAAC 1 cut(s) 430
HpaII CCGG 3 cut(s) 222, 470, 490
HphI GGTGA 5 cut(s) 70, 88, 136, 391, 542
Hpy166II GTNNAC 3 cut(s) 409, 430, 487
Hpy188I TCNGA 3 cut(s) 20, 371, 579
Hpy188III TCNNGA 6 cut(s) 506, 518, 569, 601, 620, 628
Hpy8I GTNNAC 3 cut(s) 409, 430, 487
Hpy99I CGWCG 1 cut(s) 138
HpyAV CCTTC 2 cut(s) 117, 325
HpyCH4IV ACGT 2 cut(s) 432, 624
HpyCH4V TGCA 1 cut(s) 288
HpyF3I CTNAG 1 cut(s) 268
HpySE526I ACGT 2 cut(s) 432, 624
Hsp92I GRCGYC 1 cut(s) 624
Hsp92II CATG 2 cut(s) 292, 642
KspAI GTTAAC 1 cut(s) 430
Kzo9I GATC 4 cut(s) 137, 249, 271, 396
LpnPI CCDG 9 cut(s) 16, 235, 311, 397, 483, 503, 572, 582, 633
Lsp1109I GCAGC 2 cut(s) 179, 182
LweI GCATC 1 cut(s) 291
MaeI CTAG 1 cut(s) 14
MaeII ACGT 2 cut(s) 432, 624
MalI GATC 4 cut(s) 139, 251, 273, 398
MbiI CCGCTC 1 cut(s) 53
MboI GATC 4 cut(s) 137, 249, 271, 396
MboII GAAGA 4 cut(s) 392, 400, 403, 406
MluCI AATT 1 cut(s) 552
MluI ACGCGT 1 cut(s) 173
MlyI GAGTC 2 cut(s) 248, 523
MroXI GAANNNNTTC 1 cut(s) 555
MseI TTAA 4 cut(s) 216, 348, 429, 452
MslI CAYNNNNRTG 2 cut(s) 287, 404
MspI CCGG 3 cut(s) 222, 470, 490
MspR9I CCNGG 1 cut(s) 491
MvnI CGCG 1 cut(s) 175
NciI CCSGG 1 cut(s) 491
NdeII GATC 4 cut(s) 137, 249, 271, 396
NlaIII CATG 2 cut(s) 292, 642
NmeAIII GCCGAG 2 cut(s) 108, 223
NspI RCATGY 1 cut(s) 292
NspV TTCGAA 1 cut(s) 227
OliI CACNNNNGTG 1 cut(s) 404
PaeI GCATGC 1 cut(s) 292
PdmI GAANNNNTTC 1 cut(s) 555
PfeI GAWTC 2 cut(s) 21, 494
PflFI GACNNNGTC 1 cut(s) 615
PkrI GCNGC 4 cut(s) 194, 197, 358, 595
Ple19I CGATCG 1 cut(s) 252
PleI GAGTC 2 cut(s) 247, 522
PpsI GAGTC 2 cut(s) 247, 522
Psp1406I AACGTT 1 cut(s) 432
PspPI GGNCC 2 cut(s) 33, 595
PsyI GACNNNGTC 1 cut(s) 615
PvuI CGATCG 1 cut(s) 252
RsaI GTAC 2 cut(s) 410, 488
RsaNI GTAC 2 cut(s) 409, 487
RseI CAYNNNNRTG 2 cut(s) 287, 404
SaqAI TTAA 4 cut(s) 216, 348, 429, 452
SatI GCNGC 4 cut(s) 193, 196, 357, 594
Sau3AI GATC 4 cut(s) 137, 249, 271, 396
Sau96I GGNCC 2 cut(s) 33, 595
SchI GAGTC 2 cut(s) 248, 523
ScrFI CCNGG 1 cut(s) 491
SetI ASST 9 cut(s) 63, 83, 89, 336, 435, 459, 466, 566, 627
SfaNI GCATC 1 cut(s) 291
SfuI TTCGAA 1 cut(s) 227
SmiMI CAYNNNNRTG 2 cut(s) 287, 404
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
SphI GCATGC 1 cut(s) 292
Sse9I AATT 1 cut(s) 552
SsiI CCGC 8 cut(s) 39, 51, 104, 168, 198, 357, 447, 593
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 489
TaiI ACGT 2 cut(s) 435, 627
TaqI TCGA 6 cut(s) 136, 203, 227, 252, 336, 460
TasI AATT 1 cut(s) 552
TatI WGTACW 1 cut(s) 408
TauI GCSGC 2 cut(s) 359, 596
TfiI GAWTC 2 cut(s) 21, 494
Tru1I TTAA 4 cut(s) 216, 348, 429, 452
Tru9I TTAA 4 cut(s) 216, 348, 429, 452
TseI GCWGC 2 cut(s) 192, 195
TspDTI ATGAA 1 cut(s) 327
TspGWI ACGGA 1 cut(s) 146
Tth111I GACNNNGTC 1 cut(s) 615
XceI RCATGY 1 cut(s) 292
XmnI GAANNNNTTC 1 cut(s) 555
XspI CTAG 1 cut(s) 14
ZraI GACGTC 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.