Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0010305

Physical Location & Seq

Genomic Coordinates Reverse (-)

4209271 .. 4213175

Gene Structure 3905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04600.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGTCCTCAAAGTTGATAGGTGGTGACAGTGACTTCTTTGCAAATATGGTTGTAGATGCAGTACAAGCTGTAAAGATGACCAATGCTCGGGGGGAAGTCAAGTACCCAATCAAGGGGATTAATATTTTGAAAGCTCATGGAAAAAGTGCAAGAGATAGCTATCTCTTAACTGGTTATGCACTAAATACAGGCCGTGCTGCACAAGGAATGCCACTGAGAGTTTCCCCTGCGAAGATTGCCTGTCTTGACTTTAATCTTCAGAAGACCAAAATGCAAATGGGTGTCCAAGTTTTAGTTATCGATCCCAGGGAGCTTGAAAAGATTCGCCAAAGAGAAGCTGATATGACAAAAGAGCGTATTGAGAAACTTCTGAAAGTTGGAGCAAATGTTATTCTGACCACAAAAGGGATTGACGACATGGCACTCAAGTATTTTGTGGAGGCTGGGGCTATTGCAGTCAGACGTGTTCAGAAAGAAGATATGCGCCATGTTGCTAAGGCTACAGGTGCAACAATGGTTTCAACTTTCGCTGATATGGAAGGGGAGGAAACGTTTGATACGTCACTTCTTGGATCTGCAGATGAAGTTGTGGAGGAGCGCATTTCTGATGATGATGTGATTTTGATAAAAGGAACCAAAAATAACAGTGCAGTGTCGTTGATTCTCAGAGGTGCAAATGACTATATGCTTGATGAGATGGAAAGAGCTCTTCATGATGCTTTGTCTATTGTCAAGAGGACTCTAGAATCTAACACGGTAGTACCAGGTGGAGGTGCAGTTGAGTCTGCATTGTCTCTGTATTTGGAGGGTTTTGCTACAACATTAGGATCACGTGAGCAGTTGGCAATTGCCGAGTTTGCTGAATCTTTGTTGATTATACCAAAGGTTCTTGCTGTCAATGCTGCCAAGGATTCTACAGATTTAGTTTCAATACTACGGGCCAACCACCACAGGGCACAAACCAAGGCAACAAACAGGACTGACAAGAAGGATAAGGATTATTCTAGCATGGGCTTGGACCTATTAAAGGGAGAAGTTCGTAACAACCTAGAAGCCGGAGTCATTGAGCCTGCAATGAGTAAAGTGAAGATCATTCAGTTTGCAACTGAAGCAGCTATTACAATTCTCCGAATTGATGACATGATCAGGCTAGCCAAGGATGAAAGTCAAGAGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0032991 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

393

Amino Acids

42.76

Weight (kDa)

5.9

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20050
fragaria_vesca	FvH4_5g20270
malus_domestica	MD04G1052300.v1.1 MD06G1047900.v1.1
prunus_persica	Prupe.5G058100_v2.0.a1
pyrus_communis	pycom04g04600 pycom06g04080 pycom06g04090
rosa_chinensis	RchiOBHm_Chr7g0205331
rosa_laevigata	RLG00000003387
rosa_multiflora	Rmu_sc0009317.1_g000004 Rmu_sc0009725.1_g000010 Rmu_ssc0000004.1_g000023
rosa_roxburghii	Rroxscaffold_3G00252460
rosa_rugosa	Rorug07G0089800
rosa_samantha	Rh7AG220500 Rh7BG216600 Rh7CG233400 Rh7CG233500 Rh7DG227400
rosa_wichuraiana	Rw7G019060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	551
AclWI	GGATC	3 cut(s)	296, 580, 835
AcuI	CTGAAG	2 cut(s)	242, 1128
AcvI	CACGTG	1 cut(s)	833
AfaI	GTAC	3 cut(s)	63, 104, 762
AfiI	CCNNNNNNNGG	7 cut(s)	87, 112, 113, 405, 770, 952, 1027
AflIII	ACRYGT	1 cut(s)	463
AgsI	TTSAA	4 cut(s)	130, 317, 522, 930
AjiI	CACGTC	1 cut(s)	464
AjnI	CCWGG	2 cut(s)	305, 763
AluBI	AGCT	7 cut(s)	68, 134, 159, 313, 338, 707, 1115
AluI	AGCT	7 cut(s)	68, 134, 159, 313, 338, 707, 1115
Alw21I	GWGCWC	1 cut(s)	709
Alw26I	GTCTC	1 cut(s)	798
AlwI	GGATC	3 cut(s)	296, 580, 835
Ama87I	CYCGRG	1 cut(s)	87
AoxI	GGCC	2 cut(s)	190, 939
ApeKI	GCWGC	3 cut(s)	197, 902, 1112
AseI	ATTAAT	1 cut(s)	120
Asp700I	GAANNNNTTC	1 cut(s)	321
AspLEI	GCGC	2 cut(s)	486, 600
AspS9I	GGNCC	2 cut(s)	939, 1018
AsuHPI	GGTGA	1 cut(s)	35
AsuNHI	GCTAGC	1 cut(s)	1150
AvaI	CYCGRG	1 cut(s)	87
AvaII	GGWCC	1 cut(s)	1018
BaeGI	GKGCMC	1 cut(s)	958
BaeI	ACNNNNGTAYC	2 cut(s)	744, 777
BanII	GRGCYC	1 cut(s)	709
BbrPI	CACGTG	1 cut(s)	833
BbsI	GAAGAC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	709
BbvI	GCAGC	3 cut(s)	184, 889, 1124
BccI	CCATC	1 cut(s)	691
BceAI	ACGGC	1 cut(s)	177
BciT130I	CCWGG	2 cut(s)	307, 765
BclI	TGATCA	1 cut(s)	1143
BcoDI	GTCTC	1 cut(s)	798
BfaI	CTAG	4 cut(s)	743, 1005, 1049, 1151
BfmI	CTRYAG	3 cut(s)	501, 576, 915
BisI	GCNGC	3 cut(s)	198, 903, 1113
BlsI	GCNGC	3 cut(s)	199, 904, 1114
Bme1390I	CCNGG	2 cut(s)	307, 765
Bme18I	GGWCC	1 cut(s)	1018
BmeT110I	CYCGRG	1 cut(s)	87
BmgBI	CACGTC	1 cut(s)	464
BmgT120I	GGNCC	2 cut(s)	939, 1018
BmiI	GGNNCC	1 cut(s)	634
BmrFI	CCNGG	2 cut(s)	307, 765
BmsI	GCATC	2 cut(s)	46, 706
BmtI	GCTAGC	1 cut(s)	1154
BpiI	GAAGAC	1 cut(s)	269
Bpu10I	CCTNAGC	1 cut(s)	495
BpuEI	CTTGAG	1 cut(s)	410
Bsa29I	ATCGAT	1 cut(s)	300
BsaAI	YACGTR	1 cut(s)	833
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	5 cut(s)	305, 306, 906, 963, 1155
BsaXI	ACNNNNNCTCC	6 cut(s)	372, 402, 536, 566, 762, 792
Bsc4I	CCNNNNNNNGG	7 cut(s)	87, 112, 113, 405, 770, 952, 1027
Bse1I	ACTGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	1080
Bse8I	GATNNNNATC	1 cut(s)	159
BseBI	CCWGG	2 cut(s)	307, 765
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	5 cut(s)	305, 306, 906, 963, 1155
BseGI	GGATG	1 cut(s)	1165
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	7 cut(s)	87, 112, 113, 405, 770, 952, 1027
BseMI	GCAATG	1 cut(s)	1080
BseMII	CTCAG	2 cut(s)	206, 679
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	608
BseSI	GKGCMC	1 cut(s)	958
BseXI	GCAGC	3 cut(s)	184, 889, 1124
BseYI	CCCAGC	1 cut(s)	443
BsgI	GTGCAG	3 cut(s)	183, 669, 795
BshFI	GGCC	2 cut(s)	192, 941
BshVI	ATCGAT	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	709
BsiHKCI	CYCGRG	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	1056
BslI	CCNNNNNNNGG	7 cut(s)	87, 112, 113, 405, 770, 952, 1027
BsmAI	GTCTC	1 cut(s)	798
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	2 cut(s)	192, 941
BsoBI	CYCGRG	1 cut(s)	87
Bsp1286I	GDGCHC	2 cut(s)	709, 958
Bsp143I	GATC	5 cut(s)	301, 572, 827, 1089, 1143
BspANI	GGCC	2 cut(s)	192, 941
BspCNI	CTCAG	2 cut(s)	207, 678
BspDI	ATCGAT	1 cut(s)	300
BspHI	TCATGA	1 cut(s)	712
BspLI	GGNNCC	1 cut(s)	634
BspMAI	CTGCAG	1 cut(s)	580
BspOI	GCTAGC	1 cut(s)	1154
BspPI	GGATC	3 cut(s)	296, 580, 835
BspQI	GCTCTTC	1 cut(s)	714
BsrDI	GCAATG	1 cut(s)	1080
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	5 cut(s)	305, 306, 906, 963, 1155
BssMI	GATC	5 cut(s)	301, 572, 827, 1089, 1143
BssT1I	CCWWGG	3 cut(s)	906, 963, 1155
Bst2UI	CCWGG	2 cut(s)	307, 765
Bst4CI	ACNGT	3 cut(s)	29, 647, 757
Bst6I	CTCTTC	1 cut(s)	714
BstBAI	YACGTR	1 cut(s)	833
BstC8I	GCNNGC	2 cut(s)	1071, 1152
BstDEI	CTNAG	3 cut(s)	215, 495, 665
BstENI	CCTNNNNNAGG	1 cut(s)	1025
BstF5I	GGATG	1 cut(s)	1165
BstHHI	GCGC	2 cut(s)	486, 600
BstKTI	GATC	5 cut(s)	304, 575, 830, 1092, 1146
BstMAI	GTCTC	1 cut(s)	798
BstMBI	GATC	5 cut(s)	301, 572, 827, 1089, 1143
BstMWI	GCNNNNNNNGC	6 cut(s)	65, 236, 506, 857, 899, 1109
BstNI	CCWGG	2 cut(s)	307, 765
BstSCI	CCNGG	2 cut(s)	305, 763
BstSFI	CTRYAG	3 cut(s)	501, 576, 915
BstSLI	GKGCMC	1 cut(s)	958
BstV1I	GCAGC	3 cut(s)	184, 889, 1124
BstV2I	GAAGAC	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	572
BstYI	RGATCY	1 cut(s)	572
Bsu15I	ATCGAT	1 cut(s)	300
BsuRI	GGCC	2 cut(s)	192, 941
BsuTUI	ATCGAT	1 cut(s)	300
BtrI	CACGTC	1 cut(s)	464
BtsCI	GGATG	1 cut(s)	1165
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	4 cut(s)	34, 212, 652, 657
Cac8I	GCNNGC	2 cut(s)	1071, 1152
CciI	TCATGA	1 cut(s)	712
CfoI	GCGC	2 cut(s)	486, 600
Cfr13I	GGNCC	2 cut(s)	939, 1018
ClaI	ATCGAT	1 cut(s)	300
CsiI	ACCWGGT	1 cut(s)	763
Csp6I	GTAC	3 cut(s)	62, 103, 761
CviAII	CATG	6 cut(s)	137, 418, 488, 713, 1009, 1141
CviQI	GTAC	3 cut(s)	62, 103, 761
DdeI	CTNAG	3 cut(s)	215, 495, 665
DpnI	GATC	5 cut(s)	303, 574, 829, 1091, 1145
DpnII	GATC	5 cut(s)	301, 572, 827, 1089, 1143
Eam1104I	CTCTTC	1 cut(s)	714
EarI	CTCTTC	1 cut(s)	714
Ecl136II	GAGCTC	1 cut(s)	707
Eco130I	CCWWGG	3 cut(s)	906, 963, 1155
Eco24I	GRGCYC	1 cut(s)	709
Eco47I	GGWCC	1 cut(s)	1018
Eco53kI	GAGCTC	1 cut(s)	707
Eco57I	CTGAAG	2 cut(s)	242, 1128
Eco72I	CACGTG	1 cut(s)	833
Eco88I	CYCGRG	1 cut(s)	87
EcoICRI	GAGCTC	1 cut(s)	707
EcoNI	CCTNNNNNAGG	1 cut(s)	1025
EcoRII	CCWGG	2 cut(s)	305, 763
EcoT14I	CCWWGG	3 cut(s)	906, 963, 1155
EcoT38I	GRGCYC	1 cut(s)	709
ErhI	CCWWGG	3 cut(s)	906, 963, 1155
FaeI	CATG	6 cut(s)	140, 421, 491, 716, 1012, 1144
FatI	CATG	6 cut(s)	136, 417, 487, 712, 1008, 1140
FbaI	TGATCA	1 cut(s)	1143
Fnu4HI	GCNGC	3 cut(s)	198, 903, 1113
FokI	GGATG	1 cut(s)	1172
FriOI	GRGCYC	1 cut(s)	709
Fsp4HI	GCNGC	3 cut(s)	198, 903, 1113
FspBI	CTAG	4 cut(s)	743, 1005, 1049, 1151
GlaI	GCGC	2 cut(s)	485, 599
GluI	GCNGC	3 cut(s)	198, 903, 1113
GsaI	CCCAGC	1 cut(s)	447
HaeIII	GGCC	2 cut(s)	192, 941
HapII	CCGG	1 cut(s)	1056
HhaI	GCGC	2 cut(s)	486, 600
Hin1II	CATG	6 cut(s)	140, 421, 491, 716, 1012, 1144
Hin6I	GCGC	2 cut(s)	484, 598
HinP1I	GCGC	2 cut(s)	484, 598
HinfI	GANTC	8 cut(s)	322, 661, 739, 746, 782, 863, 911, 1059
HpaII	CCGG	1 cut(s)	1056
HphI	GGTGA	1 cut(s)	35
Hpy188I	TCNGA	8 cut(s)	261, 372, 396, 461, 471, 607, 668, 1130
Hpy188III	TCNNGA	5 cut(s)	245, 713, 733, 743, 1169
HpyAV	CCTTC	2 cut(s)	533, 982
HpyCH4III	ACNGT	3 cut(s)	29, 647, 757
HpyCH4IV	ACGT	4 cut(s)	463, 551, 560, 832
HpyF10VI	GCNNNNNNNGC	6 cut(s)	65, 236, 506, 857, 899, 1109
HpyF3I	CTNAG	3 cut(s)	215, 495, 665
HpySE526I	ACGT	4 cut(s)	463, 551, 560, 832
Hsp92II	CATG	6 cut(s)	140, 421, 491, 716, 1012, 1144
HspAI	GCGC	2 cut(s)	484, 598
Ksp22I	TGATCA	1 cut(s)	1143
Kzo9I	GATC	5 cut(s)	301, 572, 827, 1089, 1143
LguI	GCTCTTC	1 cut(s)	714
LmnI	GCTCC	3 cut(s)	310, 380, 595
Lsp1109I	GCAGC	3 cut(s)	184, 889, 1124
LweI	GCATC	2 cut(s)	46, 706
MabI	ACCWGGT	1 cut(s)	763
MaeI	CTAG	4 cut(s)	743, 1005, 1049, 1151
MaeII	ACGT	4 cut(s)	463, 551, 560, 832
MaeIII	GTNAC	4 cut(s)	23, 29, 561, 1040
MalI	GATC	5 cut(s)	303, 574, 829, 1091, 1145
MboI	GATC	5 cut(s)	301, 572, 827, 1089, 1143
MboII	GAAGA	6 cut(s)	244, 248, 274, 488, 701, 1099
MfeI	CAATTG	1 cut(s)	846
MflI	RGATCY	1 cut(s)	572
MhlI	GDGCHC	2 cut(s)	709, 958
MluCI	AATT	3 cut(s)	846, 1122, 1131
MlyI	GAGTC	3 cut(s)	733, 791, 1068
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	9 cut(s)	16, 433, 538, 586, 662, 729, 764, 799, 1165
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	4 cut(s)	120, 167, 252, 1025
MspI	CCGG	1 cut(s)	1056
MspR9I	CCNGG	2 cut(s)	307, 765
MunI	CAATTG	1 cut(s)	846
Mva1269I	GAATGC	1 cut(s)	213
MvaI	CCWGG	2 cut(s)	307, 765
MwoI	GCNNNNNNNGC	6 cut(s)	65, 236, 506, 857, 899, 1109
NdeII	GATC	5 cut(s)	301, 572, 827, 1089, 1143
NheI	GCTAGC	1 cut(s)	1150
NlaIII	CATG	6 cut(s)	140, 421, 491, 716, 1012, 1144
NlaIV	GGNNCC	1 cut(s)	634
NmeAIII	GCCGAG	1 cut(s)	877
NmuCI	GTSAC	3 cut(s)	23, 29, 561
PagI	TCATGA	1 cut(s)	712
PasI	CCCWGGG	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	714
PcsI	WCGNNNNNNNCGW	1 cut(s)	557
PctI	GAATGC	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	5 cut(s)	322, 661, 746, 863, 911
PkrI	GCNGC	3 cut(s)	199, 904, 1114
PleI	GAGTC	3 cut(s)	733, 790, 1067
PmaCI	CACGTG	1 cut(s)	833
PmlI	CACGTG	1 cut(s)	833
PpsI	GAGTC	3 cut(s)	733, 790, 1067
Ppu21I	YACGTR	1 cut(s)	833
PshBI	ATTAAT	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	709
Psp1406I	AACGTT	1 cut(s)	551
Psp6I	CCWGG	2 cut(s)	305, 763
PspCI	CACGTG	1 cut(s)	833
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	2 cut(s)	305, 763
PspN4I	GGNNCC	1 cut(s)	634
PspPI	GGNCC	2 cut(s)	939, 1018
PstI	CTGCAG	1 cut(s)	580
PsuI	RGATCY	1 cut(s)	572
RsaI	GTAC	3 cut(s)	63, 104, 762
RsaNI	GTAC	3 cut(s)	62, 103, 761
SacI	GAGCTC	1 cut(s)	709
SapI	GCTCTTC	1 cut(s)	714
SaqAI	TTAA	4 cut(s)	120, 167, 252, 1025
SatI	GCNGC	3 cut(s)	198, 903, 1113
Sau3AI	GATC	5 cut(s)	301, 572, 827, 1089, 1143
Sau96I	GGNCC	2 cut(s)	939, 1018
SchI	GAGTC	3 cut(s)	733, 791, 1068
ScrFI	CCNGG	2 cut(s)	307, 765
SduI	GDGCHC	2 cut(s)	709, 958
SexAI	ACCWGGT	1 cut(s)	763
SfaNI	GCATC	2 cut(s)	46, 706
SfcI	CTRYAG	3 cut(s)	501, 576, 915
SinI	GGWCC	1 cut(s)	1018
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	3 cut(s)	846, 1122, 1131
SspI	AATATT	1 cut(s)	124
SspMI	CTAG	4 cut(s)	743, 1005, 1049, 1151
SstI	GAGCTC	1 cut(s)	709
StyD4I	CCNGG	2 cut(s)	305, 763
StyI	CCWWGG	3 cut(s)	906, 963, 1155
TaaI	ACNGT	3 cut(s)	29, 647, 757
TaiI	ACGT	4 cut(s)	466, 554, 563, 835
TaqI	TCGA	1 cut(s)	300
TasI	AATT	3 cut(s)	846, 1122, 1131
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	5 cut(s)	322, 661, 746, 863, 911
Tru1I	TTAA	4 cut(s)	120, 167, 252, 1025
Tru9I	TTAA	4 cut(s)	120, 167, 252, 1025
TscAI	CASTG	4 cut(s)	34, 219, 652, 657
TseFI	GTSAC	3 cut(s)	23, 29, 561
TseI	GCWGC	3 cut(s)	197, 902, 1112
Tsp45I	GTSAC	3 cut(s)	23, 29, 561
TspDTI	ATGAA	3 cut(s)	597, 701, 1176
TspRI	CASTG	4 cut(s)	34, 219, 652, 657
VpaK11BI	GGWCC	1 cut(s)	1018
VspI	ATTAAT	1 cut(s)	120
XagI	CCTNNNNNAGG	1 cut(s)	1025
XbaI	TCTAGA	1 cut(s)	742
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	4 cut(s)	743, 1005, 1049, 1151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.