Rorug07G0089800
TCP Family

assists the folding of proteins upon ATP hydrolysis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0010305
Physical Location & Seq
Reverse (-)
7035457 .. 7038878
3422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0089800.1

Sequence Viewer

Length: 1254 bp
ATGGCACCTTCTTGTCAAAGTTTGGTTCTTTTGTTAGCTGTGCTAGTGCTGGGATTAAGCCTACCATGGTCAGATGCTATTCGGATCAATAAAGTTAAGACCAGGACTAGCGTTTATGTCTCCCCTAAGCTTGTGTTGGAACCAGGGTCAGTTGCAGACAAGTATTTCTATAACATTAACTTCCCAAAAGGTCATATTGCTATCAAGTATTTCAATGCTGAAGTGATCGATGAACAAGGGAATCCTATTCCTCTTCACGAGACTTATCTGCATCATTGGGTTCTTGGAAGATATTATGGCAGGACAAGTTATGTGGAACCAGAGCAGATTGGTTTCGATGATATTGACGAATCAGATTTTCAGTTCGTGAGAAACAGTGGTTTGTGCCAGAATAATGTTCTTGGACAGTACTATGGACTCGGGTCAGAAACACGAAAGACAGACACACATGTACCGGATCCTTTTGGAATAGAGATTGGCAACCCTGCAGAGATTCCTGCTGGATATGAGGAGAGATGGATGCTCAATGTTCATGCTATTGATACTCGGGGCGCAGAGGATAGGTTGGGATGCACTGAATGCAGGTGTGATTTGTATAATGTAACAAAAGATGGACGAGGCCAGCCGTTGAGGCCAGGGTACACAGGGGGTTTGCACTGCTGTTATGATGGTACACAGTGTAGCGTAAAACAAGGCTATAATGGTGTCAAGAGAAACCTCTACTTGAGATACACTGTGAAGTGGGTTGATTGGTCTGATTCTATTGTGCCTGTCAAGATTTATATCTTTGATGCCACTGATAGAACGGATCATTCCTCTCTTCAACATGATTGCCGGGTCGAATATAATGTTGAGCCTTGCAGTACTGTTGATACGGTAAATGATCAGTGTTTTGACAATCAACGGGCAATCGTTACCATGCCAACTGGTGGTTATATCATCTATGGTGTAGCCCATCAGCACACTGGGGGGCGCGGTTCAACTCTATATCGAGAGGACGGACGGGTTGTGTGTTCATCAATACCAATTTATGGACAAAGCGAGGAAGTTGGAGATGAGGCTGGTTACATTGTAGGAATGTCCACTTGCTATCCACATCCGGGCTCTGTCAAAATAAAGGATGGGGAGACTCTTGTTGTGGGATCTAATTACAGCAGCTCGCAGCCGCACACAGGAGTCATGGGTCTCTTCTACATTTTGGTTGCAGAGCACCTGCCAAAGTCCTCCTTTTTTAGCTTGGACTCTTCGCTTTGA

Protein Analysis

417

Amino Acids

46.48

Weight (kDa)

5.44

Isoelectric Point (pI)

35.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURNod19 PF07712 33 - 404 2.1e-182 Stress up-regulated Nod 19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 573, 1221
Acc36I ACCTGC 2 cut(s) 573, 1221
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 2 cut(s) 929, 1031
AccII CGCG 1 cut(s) 975
AciI CCGC 2 cut(s) 975, 1166
AclWI GGATC 5 cut(s) 92, 452, 465, 816, 1150
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 5 cut(s) 410, 453, 641, 673, 865
AfiI CCNNNNNNNGG 4 cut(s) 929, 1031, 1100, 1172
AflIII ACRYGT 1 cut(s) 448
AgsI TTSAA 3 cut(s) 214, 824, 981
AjnI CCWGG 3 cut(s) 101, 142, 634
AluBI AGCT 4 cut(s) 38, 130, 1158, 1236
AluI AGCT 4 cut(s) 38, 130, 1158, 1236
Alw21I GWGCWC 1 cut(s) 1212
Alw26I GTCTC 4 cut(s) 124, 254, 1121, 1190
AlwI GGATC 5 cut(s) 92, 452, 465, 816, 1150
Ama87I CYCGRG 2 cut(s) 419, 546
AoxI GGCC 2 cut(s) 619, 632
ApeKI GCWGC 2 cut(s) 1155, 1162
AspLEI GCGC 2 cut(s) 554, 975
AsuC2I CCSGG 2 cut(s) 836, 1101
AvaI CYCGRG 2 cut(s) 419, 546
BaeI ACNNNNGTAYC 2 cut(s) 435, 468
BamHI GGATCC 1 cut(s) 457
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 1106
BauI CACGAG 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 1212
BbvI GCAGC 2 cut(s) 1167, 1174
BccI CCATC 5 cut(s) 510, 605, 662, 963, 1115
BceAI ACGGC 1 cut(s) 610
BciT130I CCWGG 3 cut(s) 103, 144, 636
BclI TGATCA 1 cut(s) 883
BcnI CCSGG 2 cut(s) 836, 1101
BcoDI GTCTC 4 cut(s) 124, 254, 1121, 1190
BfaI CTAG 2 cut(s) 44, 108
BfmI CTRYAG 1 cut(s) 486
BfuAI ACCTGC 2 cut(s) 573, 1221
BglI GCCNNNNNGGC 1 cut(s) 631
BisI GCNGC 3 cut(s) 1156, 1163, 1166
BlsI GCNGC 3 cut(s) 1157, 1164, 1167
BmcAI AGTACT 2 cut(s) 410, 865
Bme1390I CCNGG 5 cut(s) 103, 144, 636, 836, 1101
BmeT110I CYCGRG 2 cut(s) 419, 546
BmiI GGNNCC 4 cut(s) 6, 141, 318, 459
BmrFI CCNGG 5 cut(s) 103, 144, 636, 836, 1101
BmrI ACTGGG 1 cut(s) 975
BmsI GCATC 5 cut(s) 64, 280, 510, 560, 781
BmuI ACTGGG 1 cut(s) 975
BoxI GACNNNNGTC 1 cut(s) 421
Bpu10I CCTNAGC 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 745
BpuMI CCSGG 2 cut(s) 836, 1101
Bsa29I ATCGAT 1 cut(s) 228
BsaBI GATNNNNATC 1 cut(s) 782
BsaI GGTCTC 1 cut(s) 1190
BsaJI CCNNGG 3 cut(s) 65, 143, 635
BsaWI WCCGGW 1 cut(s) 454
Bsc4I CCNNNNNNNGG 4 cut(s) 929, 1031, 1100, 1172
Bse1I ACTGG 2 cut(s) 931, 970
Bse8I GATNNNNATC 1 cut(s) 782
BseBI CCWGG 3 cut(s) 103, 144, 636
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 3 cut(s) 65, 143, 635
BseGI GGATG 4 cut(s) 525, 575, 1096, 1126
BseJI GATNNNNATC 1 cut(s) 782
BseLI CCNNNNNNNGG 4 cut(s) 929, 1031, 1100, 1172
BseNI ACTGG 2 cut(s) 931, 970
BseRI GAGGAG 1 cut(s) 524
BseXI GCAGC 2 cut(s) 1167, 1174
BseYI CCCAGC 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 975
BshFI GGCC 2 cut(s) 621, 634
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 1212
BsiHKCI CYCGRG 2 cut(s) 419, 546
BsiSI CCGG 3 cut(s) 455, 835, 1100
BslI CCNNNNNNNGG 4 cut(s) 929, 1031, 1100, 1172
BsmAI GTCTC 4 cut(s) 124, 254, 1121, 1190
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 2 cut(s) 621, 634
Bso31I GGTCTC 1 cut(s) 1190
BsoBI CYCGRG 2 cut(s) 419, 546
Bsp1286I GDGCHC 2 cut(s) 1106, 1212
Bsp143I GATC 6 cut(s) 84, 225, 457, 808, 883, 1142
Bsp19I CCATGG 1 cut(s) 65
BspACI CCGC 2 cut(s) 975, 1166
BspANI GGCC 2 cut(s) 621, 634
BspDI ATCGAT 1 cut(s) 228
BspFNI CGCG 1 cut(s) 975
BspLI GGNNCC 4 cut(s) 6, 141, 318, 459
BspMAI CTGCAG 1 cut(s) 490
BspMI ACCTGC 2 cut(s) 573, 1221
BspPI GGATC 5 cut(s) 92, 452, 465, 816, 1150
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 1190
BsrI ACTGG 2 cut(s) 931, 970
BssECI CCNNGG 3 cut(s) 65, 143, 635
BssMI GATC 6 cut(s) 84, 225, 457, 808, 883, 1142
BssSI CACGAG 1 cut(s) 257
BssT1I CCWWGG 1 cut(s) 65
Bst2BI CACGAG 1 cut(s) 257
Bst2UI CCWGG 3 cut(s) 103, 144, 636
Bst4CI ACNGT 6 cut(s) 377, 408, 678, 736, 868, 877
Bst6I CTCTTC 4 cut(s) 258, 825, 1193, 1249
BstAPI GCANNNNNTGC 1 cut(s) 579
BstC8I GCNNGC 2 cut(s) 623, 1160
BstDEI CTNAG 1 cut(s) 126
BstDSI CCRYGG 1 cut(s) 65
BstF5I GGATG 4 cut(s) 525, 575, 1096, 1126
BstFNI CGCG 1 cut(s) 975
BstHHI GCGC 2 cut(s) 554, 975
BstKTI GATC 6 cut(s) 87, 228, 460, 811, 886, 1145
BstMAI GTCTC 4 cut(s) 124, 254, 1121, 1190
BstMBI GATC 6 cut(s) 84, 225, 457, 808, 883, 1142
BstMWI GCNNNNNNNGC 2 cut(s) 579, 631
BstNI CCWGG 3 cut(s) 103, 144, 636
BstNSI RCATGY 1 cut(s) 452
BstPAI GACNNNNGTC 1 cut(s) 421
BstSCI CCNGG 5 cut(s) 101, 142, 634, 834, 1099
BstSFI CTRYAG 1 cut(s) 486
BstUI CGCG 1 cut(s) 975
BstV1I GCAGC 2 cut(s) 1167, 1174
BstX2I RGATCY 2 cut(s) 457, 1142
BstYI RGATCY 2 cut(s) 457, 1142
Bsu15I ATCGAT 1 cut(s) 228
BsuRI GGCC 2 cut(s) 621, 634
BsuTUI ATCGAT 1 cut(s) 228
BtgI CCRYGG 1 cut(s) 65
BtsCI GGATG 4 cut(s) 525, 575, 1096, 1126
BtsI GCAGTG 1 cut(s) 655
BtsIMutI CAGTG 8 cut(s) 382, 573, 655, 683, 732, 795, 893, 963
BveI ACCTGC 2 cut(s) 573, 1221
Cac8I GCNNGC 2 cut(s) 623, 1160
CfoI GCGC 2 cut(s) 554, 975
ClaI ATCGAT 1 cut(s) 228
Csp6I GTAC 5 cut(s) 409, 452, 640, 672, 864
CspCI CAANNNNNGTGG 2 cut(s) 294, 329
CviAII CATG 6 cut(s) 66, 449, 533, 827, 919, 1180
CviQI GTAC 5 cut(s) 409, 452, 640, 672, 864
DdeI CTNAG 1 cut(s) 126
DpnI GATC 6 cut(s) 86, 227, 459, 810, 885, 1144
DpnII GATC 6 cut(s) 84, 225, 457, 808, 883, 1142
Eam1104I CTCTTC 4 cut(s) 258, 825, 1193, 1249
EarI CTCTTC 4 cut(s) 258, 825, 1193, 1249
Eco130I CCWWGG 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 1106
Eco31I GGTCTC 1 cut(s) 1190
Eco57I CTGAAG 1 cut(s) 240
Eco88I CYCGRG 2 cut(s) 419, 546
EcoRII CCWGG 3 cut(s) 101, 142, 634
EcoT14I CCWWGG 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 1106
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 6 cut(s) 69, 452, 536, 830, 922, 1183
FalI AAGNNNNNCTT 2 cut(s) 1211, 1243
FatI CATG 6 cut(s) 65, 448, 532, 826, 918, 1179
FbaI TGATCA 1 cut(s) 883
Fnu4HI GCNGC 3 cut(s) 1156, 1163, 1166
FokI GGATG 4 cut(s) 532, 582, 1083, 1133
FriOI GRGCYC 1 cut(s) 1106
Fsp4HI GCNGC 3 cut(s) 1156, 1163, 1166
FspBI CTAG 2 cut(s) 44, 108
GlaI GCGC 2 cut(s) 553, 974
GluI GCNGC 3 cut(s) 1156, 1163, 1166
GsaI CCCAGC 1 cut(s) 53
HaeIII GGCC 2 cut(s) 621, 634
HapII CCGG 3 cut(s) 455, 835, 1100
HhaI GCGC 2 cut(s) 554, 975
Hin1II CATG 6 cut(s) 69, 452, 536, 830, 922, 1183
Hin6I GCGC 2 cut(s) 552, 973
HinP1I GCGC 2 cut(s) 552, 973
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 8 cut(s) 241, 350, 417, 493, 758, 1129, 1176, 1241
HpaII CCGG 3 cut(s) 455, 835, 1100
Hpy166II GTNNAC 3 cut(s) 642, 674, 1083
Hpy188I TCNGA 5 cut(s) 73, 84, 355, 427, 757
Hpy188III TCNNGA 5 cut(s) 257, 367, 709, 775, 992
Hpy8I GTNNAC 3 cut(s) 642, 674, 1083
HpyAV CCTTC 1 cut(s) 18
HpyCH4III ACNGT 6 cut(s) 377, 408, 678, 736, 868, 877
HpyCH4V TGCA 8 cut(s) 155, 271, 488, 573, 582, 655, 861, 1205
HpyF10VI GCNNNNNNNGC 2 cut(s) 579, 631
HpyF3I CTNAG 1 cut(s) 126
Hsp92II CATG 6 cut(s) 69, 452, 536, 830, 922, 1183
HspAI GCGC 2 cut(s) 552, 973
Ksp22I TGATCA 1 cut(s) 883
Kzo9I GATC 6 cut(s) 84, 225, 457, 808, 883, 1142
Lsp1109I GCAGC 2 cut(s) 1167, 1174
LweI GCATC 5 cut(s) 64, 280, 510, 560, 781
MaeI CTAG 2 cut(s) 44, 108
MaeIII GTNAC 3 cut(s) 601, 913, 1064
MalI GATC 6 cut(s) 86, 227, 459, 810, 885, 1144
MboI GATC 6 cut(s) 84, 225, 457, 808, 883, 1142
MboII GAAGA 5 cut(s) 245, 300, 812, 1180, 1236
MflI RGATCY 2 cut(s) 457, 1142
MhlI GDGCHC 2 cut(s) 1106, 1212
MluCI AATT 2 cut(s) 1026, 1147
MlyI GAGTC 4 cut(s) 411, 1123, 1185, 1235
MmeI TCCRAC 2 cut(s) 117, 1030
MseI TTAA 3 cut(s) 56, 96, 177
MspI CCGG 3 cut(s) 455, 835, 1100
MspR9I CCNGG 5 cut(s) 103, 144, 636, 836, 1101
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 3 cut(s) 103, 144, 636
MvnI CGCG 1 cut(s) 975
MwoI GCNNNNNNNGC 2 cut(s) 579, 631
NciI CCSGG 2 cut(s) 836, 1101
NcoI CCATGG 1 cut(s) 65
NdeII GATC 6 cut(s) 84, 225, 457, 808, 883, 1142
NlaIII CATG 6 cut(s) 69, 452, 536, 830, 922, 1183
NlaIV GGNNCC 4 cut(s) 6, 141, 318, 459
NspI RCATGY 1 cut(s) 452
PaqCI CACCTGC 2 cut(s) 573, 1221
PciI ACATGT 1 cut(s) 448
PctI GAATGC 1 cut(s) 584
PfeI GAWTC 4 cut(s) 241, 350, 493, 758
PflMI CCANNNNNTGG 2 cut(s) 929, 1031
PkrI GCNGC 3 cut(s) 1157, 1164, 1167
PleI GAGTC 4 cut(s) 411, 1123, 1184, 1235
PpsI GAGTC 4 cut(s) 411, 1123, 1184, 1235
PscI ACATGT 1 cut(s) 448
PshAI GACNNNNGTC 1 cut(s) 421
Psp6I CCWGG 3 cut(s) 101, 142, 634
PspFI CCCAGC 1 cut(s) 49
PspGI CCWGG 3 cut(s) 101, 142, 634
PspN4I GGNNCC 4 cut(s) 6, 141, 318, 459
PstI CTGCAG 1 cut(s) 490
PsuI RGATCY 2 cut(s) 457, 1142
RsaI GTAC 5 cut(s) 410, 453, 641, 673, 865
RsaNI GTAC 5 cut(s) 409, 452, 640, 672, 864
SaqAI TTAA 3 cut(s) 56, 96, 177
SatI GCNGC 3 cut(s) 1156, 1163, 1166
Sau3AI GATC 6 cut(s) 84, 225, 457, 808, 883, 1142
ScaI AGTACT 2 cut(s) 410, 865
SchI GAGTC 4 cut(s) 411, 1123, 1185, 1235
ScrFI CCNGG 5 cut(s) 103, 144, 636, 836, 1101
SduI GDGCHC 2 cut(s) 1106, 1212
SfaNI GCATC 5 cut(s) 64, 280, 510, 560, 781
SfcI CTRYAG 1 cut(s) 486
SmlI CTYRAG 1 cut(s) 724
SmoI CTYRAG 1 cut(s) 724
Sse9I AATT 2 cut(s) 1026, 1147
SsiI CCGC 2 cut(s) 975, 1166
SspMI CTAG 2 cut(s) 44, 108
StyD4I CCNGG 5 cut(s) 101, 142, 634, 834, 1099
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 6 cut(s) 377, 408, 678, 736, 868, 877
TaqI TCGA 4 cut(s) 228, 336, 840, 991
TasI AATT 2 cut(s) 1026, 1147
TatI WGTACW 2 cut(s) 408, 863
TauI GCSGC 1 cut(s) 1168
TfiI GAWTC 4 cut(s) 241, 350, 493, 758
Tru1I TTAA 3 cut(s) 56, 96, 177
Tru9I TTAA 3 cut(s) 56, 96, 177
TscAI CASTG 8 cut(s) 382, 580, 662, 683, 739, 802, 893, 970
TseI GCWGC 2 cut(s) 1155, 1162
TspDTI ATGAA 3 cut(s) 246, 521, 1005
TspGWI ACGGA 2 cut(s) 821, 1014
TspRI CASTG 8 cut(s) 382, 580, 662, 683, 739, 802, 893, 970
Van91I CCANNNNNTGG 2 cut(s) 929, 1031
XceI RCATGY 1 cut(s) 452
XcmI CCANNNNNNNNNTGG 1 cut(s) 962
XspI CTAG 2 cut(s) 44, 108
ZrmI AGTACT 2 cut(s) 410, 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.