Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009725.1

Orthogroup ID

OG0010305

Physical Location & Seq

Genomic Coordinates Forward (+)

44083 .. 46373

Gene Structure 2291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009725.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atggctgtttccggccagacgcccgatatcatgggcgaccgtcagtacggtcaggacgttcgcacgcaaaatgtggtggcctgtcaagctattgccaatgtcgtcaaatcttcacttggccctgttggtcttgacaagatgcttgttgatgatattggtgacgtgactattacaaatgatggagctaccatactcaagatgctagaagttgagcatcctgctgccaaggtacttgtggatctggctgagcttcaagacaaagaagttggagatgggacgacatcagtcgtcattcttgctgcagagttgttaaagcgagcaaatgatctagtgaagcacaaaattcacccaacatccattatcagtggttacaggcttgctatgagggaagcatgcaaatatgttgaggaaaagttagccgtgaaggttgaaaagctcggaaaagattgcctagtaaattgtgcaaaaacaagcatgtcctcgaagttgatatctggtgacagtgatttctttgcaaatttggttgtagatgctgtacaagctgtaaagatgaccaatgctcggggggacatcaagtacccaatcaaggggatcaatattttgaaagctcatggaaaaagtgcaagagaaagttatctcttgaatggatatgcactaaatacaggccgtgctgcacaaggaatgccacttaaagtctcccctgcaaggattgcttgccttgacttgaatcttcagaagacaaaaatgcaaatgggtgtccaagttttagttagcgaccctagggagcttgaaaaaatccgccaaaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0032991 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

269

Amino Acids

29.13

Weight (kDa)

8.84

Isoelectric Point (pI)

27.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20050
fragaria_vesca	FvH4_5g20270
malus_domestica	MD04G1052300.v1.1 MD06G1047900.v1.1
prunus_persica	Prupe.5G058100_v2.0.a1
pyrus_communis	pycom04g04600 pycom06g04080 pycom06g04090
rosa_chinensis	RchiOBHm_Chr7g0205331
rosa_laevigata	RLG00000003387
rosa_multiflora	Rmu_sc0009317.1_g000004 Rmu_sc0009725.1_g000010 Rmu_ssc0000004.1_g000023
rosa_roxburghii	Rroxscaffold_3G00252460
rosa_rugosa	Rorug07G0089800
rosa_samantha	Rh7AG220500 Rh7BG216600 Rh7CG233400 Rh7CG233500 Rh7DG227400
rosa_wichuraiana	Rw7G019060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	799
AclWI	GGATC	2 cut(s)	246, 599
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	2 cut(s)	342, 517
AcuI	CTGAAG	1 cut(s)	716
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	4 cut(s)	47, 231, 537, 578
AfiI	CCNNNNNNNGG	4 cut(s)	561, 586, 587, 705
AgsI	TTSAA	6 cut(s)	254, 431, 604, 643, 727, 791
AjiI	CACGTC	1 cut(s)	163
AluBI	AGCT	7 cut(s)	89, 185, 250, 436, 542, 608, 787
AluI	AGCT	7 cut(s)	89, 185, 250, 436, 542, 608, 787
Alw26I	GTCTC	1 cut(s)	700
AlwI	GGATC	2 cut(s)	246, 599
Ama87I	CYCGRG	1 cut(s)	561
AoxI	GGCC	4 cut(s)	13, 78, 118, 664
ApeKI	GCWGC	3 cut(s)	221, 299, 671
ApoI	RAATTY	2 cut(s)	342, 517
AspA2I	CCTAGG	1 cut(s)	779
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	3 cut(s)	170, 338, 509
AvaI	CYCGRG	1 cut(s)	561
AvrII	CCTAGG	1 cut(s)	779
BbsI	GAAGAC	1 cut(s)	743
BbvI	GCAGC	3 cut(s)	208, 286, 658
BccI	CCATC	2 cut(s)	173, 266
BceAI	ACGGC	2 cut(s)	404, 651
BcoDI	GTCTC	1 cut(s)	700
BfaI	CTAG	4 cut(s)	203, 329, 452, 780
BfmI	CTRYAG	1 cut(s)	300
BisI	GCNGC	3 cut(s)	222, 300, 672
BlnI	CCTAGG	1 cut(s)	779
BlpI	GCTNAGC	1 cut(s)	246
BlsI	GCNGC	3 cut(s)	223, 301, 673
BmeT110I	CYCGRG	1 cut(s)	561
BmgBI	CACGTC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	119
BmsI	GCATC	4 cut(s)	129, 189, 223, 520
BoxI	GACNNNNGTC	1 cut(s)	284
BpiI	GAAGAC	1 cut(s)	743
Bpu1102I	GCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	225, 779
Bsc4I	CCNNNNNNNGG	4 cut(s)	561, 586, 587, 705
BseDI	CCNNGG	2 cut(s)	225, 779
BseGI	GGATG	2 cut(s)	214, 353
BseLI	CCNNNNNNNGG	4 cut(s)	561, 586, 587, 705
BseMII	CTCAG	1 cut(s)	237
BseXI	GCAGC	3 cut(s)	208, 286, 658
BsgI	GTGCAG	1 cut(s)	657
Bsh1285I	CGRYCG	1 cut(s)	40
BshFI	GGCC	4 cut(s)	15, 80, 120, 666
BsiEI	CGRYCG	1 cut(s)	40
BsiHKCI	CYCGRG	1 cut(s)	561
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	2 cut(s)	289, 581
BslI	CCNNNNNNNGG	4 cut(s)	561, 586, 587, 705
BsmAI	GTCTC	1 cut(s)	700
BsmFI	GGGAC	2 cut(s)	289, 581
BsmI	GAATGC	1 cut(s)	687
BsnI	GGCC	4 cut(s)	15, 80, 120, 666
BsoBI	CYCGRG	1 cut(s)	561
Bsp1407I	TGTACA	1 cut(s)	535
Bsp143I	GATC	3 cut(s)	238, 325, 591
Bsp1720I	GCTNAGC	1 cut(s)	246
BspACI	CCGC	1 cut(s)	799
BspANI	GGCC	4 cut(s)	15, 80, 120, 666
BspCNI	CTCAG	1 cut(s)	238
BspMAI	CTGCAG	1 cut(s)	304
BspPI	GGATC	2 cut(s)	246, 599
BsrGI	TGTACA	1 cut(s)	535
BssECI	CCNNGG	2 cut(s)	225, 779
BssMI	GATC	3 cut(s)	238, 325, 591
BssNI	GRCGYC	1 cut(s)	20
BssT1I	CCWWGG	2 cut(s)	225, 779
Bst4CI	ACNGT	3 cut(s)	41, 50, 503
BstACI	GRCGYC	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	710
BstAUI	TGTACA	1 cut(s)	535
BstC8I	GCNNGC	5 cut(s)	65, 318, 378, 394, 715
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	2 cut(s)	214, 353
BstKTI	GATC	3 cut(s)	241, 328, 594
BstMAI	GTCTC	1 cut(s)	700
BstMBI	GATC	3 cut(s)	238, 325, 591
BstMCI	CGRYCG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 539, 710
BstNSI	RCATGY	2 cut(s)	396, 478
BstPAI	GACNNNNGTC	1 cut(s)	284
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	3 cut(s)	208, 286, 658
BstV2I	GAAGAC	1 cut(s)	743
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	4 cut(s)	15, 80, 120, 666
BtrI	CACGTC	1 cut(s)	163
BtsCI	GGATG	2 cut(s)	214, 353
BtsIMutI	CAGTG	2 cut(s)	370, 508
Cac8I	GCNNGC	5 cut(s)	65, 318, 378, 394, 715
Cfr13I	GGNCC	1 cut(s)	119
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	4 cut(s)	46, 230, 536, 577
CviAII	CATG	4 cut(s)	31, 393, 475, 611
CviQI	GTAC	4 cut(s)	46, 230, 536, 577
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	3 cut(s)	240, 327, 593
DpnII	GATC	3 cut(s)	238, 325, 591
EaeI	YGGCCR	1 cut(s)	13
EciI	GGCGGA	1 cut(s)	788
Eco130I	CCWWGG	2 cut(s)	225, 779
Eco32I	GATATC	2 cut(s)	28, 492
Eco57I	CTGAAG	1 cut(s)	716
Eco88I	CYCGRG	1 cut(s)	561
EcoRV	GATATC	2 cut(s)	28, 492
EcoT14I	CCWWGG	2 cut(s)	225, 779
ErhI	CCWWGG	2 cut(s)	225, 779
FaeI	CATG	4 cut(s)	34, 396, 478, 614
FaiI	YATR	8 cut(s)	32, 191, 383, 394, 402, 476, 612, 651
FalI	AAGNNNNNCTT	2 cut(s)	697, 729
FaqI	GGGAC	2 cut(s)	289, 581
FatI	CATG	4 cut(s)	30, 392, 474, 610
Fnu4HI	GCNGC	3 cut(s)	222, 300, 672
FokI	GGATG	2 cut(s)	201, 340
Fsp4HI	GCNGC	3 cut(s)	222, 300, 672
FspBI	CTAG	4 cut(s)	203, 329, 452, 780
GluI	GCNGC	3 cut(s)	222, 300, 672
HaeIII	GGCC	4 cut(s)	15, 80, 120, 666
HapII	CCGG	1 cut(s)	12
HgaI	GACGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	4 cut(s)	34, 396, 478, 614
HinfI	GANTC	1 cut(s)	727
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	3 cut(s)	170, 338, 509
Hpy188I	TCNGA	2 cut(s)	440, 735
Hpy188III	TCNNGA	5 cut(s)	53, 131, 196, 254, 640
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	3 cut(s)	41, 50, 503
HpyCH4IV	ACGT	2 cut(s)	57, 162
HpyCH4V	TGCA	9 cut(s)	302, 396, 464, 515, 623, 653, 674, 704, 748
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 539, 710
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	2 cut(s)	57, 162
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	4 cut(s)	34, 396, 478, 614
Kzo9I	GATC	3 cut(s)	238, 325, 591
LmnI	GCTCC	2 cut(s)	182, 784
Lsp1109I	GCAGC	3 cut(s)	208, 286, 658
LweI	GCATC	4 cut(s)	129, 189, 223, 520
MaeI	CTAG	4 cut(s)	203, 329, 452, 780
MaeII	ACGT	2 cut(s)	57, 162
MaeIII	GTNAC	4 cut(s)	158, 163, 368, 497
MalI	GATC	3 cut(s)	240, 327, 593
MboI	GATC	3 cut(s)	238, 325, 591
MboII	GAAGA	3 cut(s)	102, 722, 748
MflI	RGATCY	1 cut(s)	238
MluCI	AATT	3 cut(s)	342, 457, 517
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	3 cut(s)	378, 400, 490
MseI	TTAA	2 cut(s)	311, 690
MspI	CCGG	1 cut(s)	12
Mva1269I	GAATGC	1 cut(s)	687
MwoI	GCNNNNNNNGC	3 cut(s)	86, 539, 710
NdeII	GATC	3 cut(s)	238, 325, 591
NlaIII	CATG	4 cut(s)	34, 396, 478, 614
NmuCI	GTSAC	3 cut(s)	158, 163, 497
NspI	RCATGY	2 cut(s)	396, 478
PaeI	GCATGC	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PctI	GAATGC	1 cut(s)	687
PfeI	GAWTC	1 cut(s)	727
PkrI	GCNGC	3 cut(s)	223, 301, 673
PshAI	GACNNNNGTC	1 cut(s)	284
PspPI	GGNCC	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	4 cut(s)	47, 231, 537, 578
RsaNI	GTAC	4 cut(s)	46, 230, 536, 577
SaqAI	TTAA	2 cut(s)	311, 690
SatI	GCNGC	3 cut(s)	222, 300, 672
Sau3AI	GATC	3 cut(s)	238, 325, 591
Sau96I	GGNCC	1 cut(s)	119
SfaNI	GCATC	4 cut(s)	129, 189, 223, 520
SfcI	CTRYAG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SphI	GCATGC	1 cut(s)	396
Sse9I	AATT	3 cut(s)	342, 457, 517
SsiI	CCGC	1 cut(s)	799
SspI	AATATT	1 cut(s)	598
SspMI	CTAG	4 cut(s)	203, 329, 452, 780
StyI	CCWWGG	2 cut(s)	225, 779
TaaI	ACNGT	3 cut(s)	41, 50, 503
TaiI	ACGT	2 cut(s)	60, 165
TaqI	TCGA	1 cut(s)	482
TasI	AATT	3 cut(s)	342, 457, 517
TatI	WGTACW	1 cut(s)	535
TfiI	GAWTC	1 cut(s)	727
Tru1I	TTAA	2 cut(s)	311, 690
Tru9I	TTAA	2 cut(s)	311, 690
TscAI	CASTG	2 cut(s)	370, 508
TseFI	GTSAC	3 cut(s)	158, 163, 497
TseI	GCWGC	3 cut(s)	221, 299, 671
Tsp45I	GTSAC	3 cut(s)	158, 163, 497
TspRI	CASTG	2 cut(s)	370, 508
XapI	RAATTY	2 cut(s)	342, 517
XceI	RCATGY	2 cut(s)	396, 478
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XmaJI	CCTAGG	1 cut(s)	779
XspI	CTAG	4 cut(s)	203, 329, 452, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.