Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009317.1

Orthogroup ID

OG0010305

Physical Location & Seq

Genomic Coordinates Reverse (-)

7763 .. 11346

Gene Structure 3584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009317.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atgcgccatgttgccaaggctacgggtgcaacaatggtatcaactttcgctgatatggaaggagaggaaacatttgattcttcacttcttggatctgcagatgaagttgtagaggagcgcgtttctgatgatgatgtaattttgataaaagggaccaaaactaatagtgcggtctccttgatccttagaggtgcaaatgactacatgcttgacgagatggagagagctcttcatgatgctctatctattgtcaagaggactctagaatcgaacacggtggtacctggtggaggtgcagttgagactgccttgtgtgagtatttggagtgctttgctataacactaggatctcgtgagcagttggcaattgcagagtttgctgaatctttgacaatcataccaaaggtgctagctgtcaatgctgccaaggactctacagacttggttgcaaagatgaggtcctaccaccacaaggcacaagctccgggtgacaggaggcagcagtcgcattgcaactggggtttggatcttgtaaaaggagtagtggttaataacttagaggctggagtcattgagcctgcaatgagcaaaataaagatgattcagtttgcaactgaagcggccatcacgattctccgaattgatgacatgatcaggctagtcaaagatgaaagtcagggtgaggactgtgaaggtaagccaactttcacacctaagatagtctccataggtccactccatcatggcttgagagccctggaagaggaaaaaaataggtatcttcaacattatctctgtgggacagaaagagcatcagaggattactctacaagtaaaataaaagatcaagaagcaagactgcgcagctgttactcggagacaattgagtttaatagcgatgaacttgtgagaatcattctagtcgatgccgtgttcatcattgagatctttctgaggtattatttccccgaattgcaggatgagaatgactacatattgacagatccccattggttacaaggtgtttcttgtgacttggggttcctggaaaatcaattgccgttattcattcttgaggatctttttgaccaaacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0032991 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

365

Amino Acids

40.77

Weight (kDa)

4.67

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20050
fragaria_vesca	FvH4_5g20270
malus_domestica	MD04G1052300.v1.1 MD06G1047900.v1.1
prunus_persica	Prupe.5G058100_v2.0.a1
pyrus_communis	pycom04g04600 pycom06g04080 pycom06g04090
rosa_chinensis	RchiOBHm_Chr7g0205331
rosa_laevigata	RLG00000003387
rosa_multiflora	Rmu_sc0009317.1_g000004 Rmu_sc0009725.1_g000010 Rmu_ssc0000004.1_g000023
rosa_roxburghii	Rroxscaffold_3G00252460
rosa_rugosa	Rorug07G0089800
rosa_samantha	Rh7AG220500 Rh7BG216600 Rh7CG233400 Rh7CG233500 Rh7DG227400
rosa_wichuraiana	Rw7G019060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	863
Acc65I	GGTACC	1 cut(s)	280
AccB1I	GGYRCC	1 cut(s)	280
AccII	CGCG	1 cut(s)	120
AciI	CCGC	2 cut(s)	170, 620
AclWI	GGATC	6 cut(s)	100, 175, 355, 534, 998, 1086
AcoI	YGGCCR	1 cut(s)	621
AcuI	CTGAAG	1 cut(s)	636
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	3 cut(s)	290, 472, 763
AgsI	TTSAA	1 cut(s)	785
AjnI	CCWGG	3 cut(s)	283, 756, 1044
AluBI	AGCT	4 cut(s)	227, 413, 482, 867
AluI	AGCT	4 cut(s)	227, 413, 482, 867
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	4 cut(s)	178, 296, 727, 872
AlwI	GGATC	6 cut(s)	100, 175, 355, 534, 998, 1086
AoxI	GGCC	1 cut(s)	621
ApeKI	GCWGC	3 cut(s)	422, 499, 864
ArsI	GACNNNNNNTTYG	2 cut(s)	443, 475
Asp718I	GGTACC	1 cut(s)	280
AspLEI	GCGC	3 cut(s)	6, 120, 864
AspS9I	GGNCC	3 cut(s)	153, 459, 731
AsuC2I	CCSGG	1 cut(s)	486
AsuHPI	GGTGA	2 cut(s)	500, 692
AsuNHI	GCTAGC	1 cut(s)	409
AvaII	GGWCC	3 cut(s)	153, 459, 731
BaeI	ACNNNNGTAYC	4 cut(s)	21, 54, 264, 297
BanI	GGYRCC	1 cut(s)	280
BanII	GRGCYC	2 cut(s)	229, 757
BauI	CACGAG	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	3 cut(s)	409, 511, 876
BccI	CCATC	3 cut(s)	211, 632, 747
BceAI	ACGGC	2 cut(s)	914, 1045
BciT130I	CCWGG	3 cut(s)	285, 758, 1046
BclI	TGATCA	1 cut(s)	651
BcnI	CCSGG	1 cut(s)	486
BcoDI	GTCTC	4 cut(s)	178, 296, 727, 872
BfaI	CTAG	5 cut(s)	263, 344, 410, 659, 920
BfmI	CTRYAG	2 cut(s)	96, 435
BglII	AGATCT	1 cut(s)	945
BisI	GCNGC	4 cut(s)	423, 500, 621, 865
BlsI	GCNGC	4 cut(s)	424, 501, 622, 866
Bme1390I	CCNGG	4 cut(s)	285, 486, 758, 1046
Bme18I	GGWCC	3 cut(s)	153, 459, 731
BmgT120I	GGNCC	3 cut(s)	153, 459, 731
BmiI	GGNNCC	3 cut(s)	154, 282, 1043
BmrFI	CCNGG	4 cut(s)	285, 486, 758, 1046
BmrI	ACTGGG	1 cut(s)	526
BmsI	GCATC	3 cut(s)	226, 821, 916
BmtI	GCTAGC	1 cut(s)	413
BmuI	ACTGGG	1 cut(s)	526
BplI	GAGNNNNNCTC	2 cut(s)	809, 841
BpmI	CTGGAG	1 cut(s)	585
BpuEI	CTTGAG	2 cut(s)	769, 1094
BpuMI	CCSGG	1 cut(s)	486
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	3 cut(s)	15, 426, 756
BsaXI	ACNNNNNCTCC	4 cut(s)	282, 312, 531, 561
Bsc4I	CCNNNNNNNGG	3 cut(s)	290, 472, 763
Bse1I	ACTGG	1 cut(s)	521
Bse3DI	GCAATG	2 cut(s)	508, 588
BseBI	CCWGG	3 cut(s)	285, 758, 1046
BseDI	CCNNGG	3 cut(s)	15, 426, 756
BseGI	GGATG	1 cut(s)	985
BseLI	CCNNNNNNNGG	3 cut(s)	290, 472, 763
BseMI	GCAATG	2 cut(s)	508, 588
BseMII	CTCAG	1 cut(s)	944
BseNI	ACTGG	1 cut(s)	521
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	3 cut(s)	409, 511, 876
BsgI	GTGCAG	1 cut(s)	315
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	1 cut(s)	623
BshNI	GGYRCC	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	485
BslFI	GGGAC	2 cut(s)	166, 814
BslI	CCNNNNNNNGG	3 cut(s)	290, 472, 763
BsmAI	GTCTC	4 cut(s)	178, 296, 727, 872
BsmFI	GGGAC	2 cut(s)	166, 814
BsnI	GGCC	1 cut(s)	623
Bso31I	GGTCTC	1 cut(s)	178
Bsp1286I	GDGCHC	2 cut(s)	229, 757
Bsp143I	GATC	9 cut(s)	92, 180, 347, 526, 651, 844, 945, 1003, 1078
BspACI	CCGC	2 cut(s)	170, 620
BspANI	GGCC	1 cut(s)	623
BspCNI	CTCAG	1 cut(s)	945
BspFNI	CGCG	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	3 cut(s)	154, 282, 1043
BspMAI	CTGCAG	1 cut(s)	100
BspOI	GCTAGC	1 cut(s)	413
BspPI	GGATC	6 cut(s)	100, 175, 355, 534, 998, 1086
BspQI	GCTCTTC	1 cut(s)	234
BspT107I	GGYRCC	1 cut(s)	280
BspTNI	GGTCTC	1 cut(s)	178
BsrDI	GCAATG	2 cut(s)	508, 588
BsrI	ACTGG	1 cut(s)	521
BssECI	CCNNGG	3 cut(s)	15, 426, 756
BssMI	GATC	9 cut(s)	92, 180, 347, 526, 651, 844, 945, 1003, 1078
BssSI	CACGAG	1 cut(s)	351
BssT1I	CCWWGG	2 cut(s)	15, 426
Bst2BI	CACGAG	1 cut(s)	351
Bst2UI	CCWGG	3 cut(s)	285, 758, 1046
Bst4CI	ACNGT	2 cut(s)	277, 689
Bst6I	CTCTTC	2 cut(s)	234, 756
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	411, 579
BstDEI	CTNAG	4 cut(s)	185, 556, 714, 953
BstENI	CCTNNNNNAGG	2 cut(s)	288, 761
BstF5I	GGATG	1 cut(s)	985
BstFNI	CGCG	1 cut(s)	120
BstHHI	GCGC	3 cut(s)	6, 120, 864
BstKTI	GATC	9 cut(s)	95, 183, 350, 529, 654, 847, 948, 1006, 1081
BstMAI	GTCTC	4 cut(s)	178, 296, 727, 872
BstMBI	GATC	9 cut(s)	92, 180, 347, 526, 651, 844, 945, 1003, 1078
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 377, 419, 505, 617
BstNI	CCWGG	3 cut(s)	285, 758, 1046
BstNSI	RCATGY	1 cut(s)	208
BstSCI	CCNGG	4 cut(s)	283, 484, 756, 1044
BstSFI	CTRYAG	2 cut(s)	96, 435
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	3 cut(s)	409, 511, 876
BstX2I	RGATCY	6 cut(s)	92, 347, 526, 945, 1003, 1078
BstYI	RGATCY	6 cut(s)	92, 347, 526, 945, 1003, 1078
BsuRI	GGCC	1 cut(s)	623
BtgZI	GCGATG	1 cut(s)	912
BtsCI	GGATG	1 cut(s)	985
Cac8I	GCNNGC	2 cut(s)	411, 579
CciI	TCATGA	1 cut(s)	232
CfoI	GCGC	3 cut(s)	6, 120, 864
Cfr13I	GGNCC	3 cut(s)	153, 459, 731
CsiI	ACCWGGT	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	5 cut(s)	8, 205, 233, 649, 743
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	4 cut(s)	185, 556, 714, 953
DpnI	GATC	9 cut(s)	94, 182, 349, 528, 653, 846, 947, 1005, 1080
DpnII	GATC	9 cut(s)	92, 180, 347, 526, 651, 844, 945, 1003, 1078
EaeI	YGGCCR	1 cut(s)	621
Eam1104I	CTCTTC	2 cut(s)	234, 756
EarI	CTCTTC	2 cut(s)	234, 756
Ecl136II	GAGCTC	1 cut(s)	227
Eco130I	CCWWGG	2 cut(s)	15, 426
Eco24I	GRGCYC	2 cut(s)	229, 757
Eco31I	GGTCTC	1 cut(s)	178
Eco47I	GGWCC	3 cut(s)	153, 459, 731
Eco53kI	GAGCTC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	636
EcoICRI	GAGCTC	1 cut(s)	227
EcoNI	CCTNNNNNAGG	2 cut(s)	288, 761
EcoO109I	RGGNCCY	1 cut(s)	459
EcoRII	CCWGG	3 cut(s)	283, 756, 1044
EcoT14I	CCWWGG	2 cut(s)	15, 426
EcoT38I	GRGCYC	2 cut(s)	229, 757
ErhI	CCWWGG	2 cut(s)	15, 426
FaeI	CATG	5 cut(s)	11, 208, 236, 652, 746
FaqI	GGGAC	2 cut(s)	166, 814
FatI	CATG	5 cut(s)	7, 204, 232, 648, 742
FbaI	TGATCA	1 cut(s)	651
Fnu4HI	GCNGC	4 cut(s)	423, 500, 621, 865
FokI	GGATG	1 cut(s)	992
FriOI	GRGCYC	2 cut(s)	229, 757
Fsp4HI	GCNGC	4 cut(s)	423, 500, 621, 865
FspBI	CTAG	5 cut(s)	263, 344, 410, 659, 920
FspI	TGCGCA	1 cut(s)	863
GlaI	GCGC	3 cut(s)	5, 119, 863
GluI	GCNGC	4 cut(s)	423, 500, 621, 865
GsuI	CTGGAG	1 cut(s)	585
HaeIII	GGCC	1 cut(s)	623
HapII	CCGG	1 cut(s)	485
HhaI	GCGC	3 cut(s)	6, 120, 864
Hin1II	CATG	5 cut(s)	11, 208, 236, 652, 746
Hin6I	GCGC	3 cut(s)	4, 118, 862
HinP1I	GCGC	3 cut(s)	4, 118, 862
HinfI	GANTC	9 cut(s)	77, 259, 266, 383, 431, 567, 601, 631, 912
HpaII	CCGG	1 cut(s)	485
HphI	GGTGA	2 cut(s)	500, 692
Hpy166II	GTNNAC	1 cut(s)	734
Hpy188I	TCNGA	5 cut(s)	127, 638, 817, 877, 954
Hpy188III	TCNNGA	7 cut(s)	233, 253, 263, 353, 628, 848, 1073
Hpy8I	GTNNAC	1 cut(s)	734
HpyAV	CCTTC	2 cut(s)	53, 686
HpyCH4III	ACNGT	2 cut(s)	277, 689
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 377, 419, 505, 617
HpyF3I	CTNAG	4 cut(s)	185, 556, 714, 953
Hsp92II	CATG	5 cut(s)	11, 208, 236, 652, 746
HspAI	GCGC	3 cut(s)	4, 118, 862
KpnI	GGTACC	1 cut(s)	284
Ksp22I	TGATCA	1 cut(s)	651
Kzo9I	GATC	9 cut(s)	92, 180, 347, 526, 651, 844, 945, 1003, 1078
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	2 cut(s)	115, 487
Lsp1109I	GCAGC	3 cut(s)	409, 511, 876
LweI	GCATC	3 cut(s)	226, 821, 916
MabI	ACCWGGT	1 cut(s)	283
MaeI	CTAG	5 cut(s)	263, 344, 410, 659, 920
MaeIII	GTNAC	4 cut(s)	488, 869, 1014, 1031
MalI	GATC	9 cut(s)	94, 182, 349, 528, 653, 846, 947, 1005, 1080
MboI	GATC	9 cut(s)	92, 180, 347, 526, 651, 844, 945, 1003, 1078
MboII	GAAGA	4 cut(s)	72, 221, 773, 773
MfeI	CAATTG	3 cut(s)	366, 882, 1055
MflI	RGATCY	6 cut(s)	92, 347, 526, 945, 1003, 1078
MhlI	GDGCHC	2 cut(s)	229, 757
MluCI	AATT	6 cut(s)	138, 366, 639, 882, 971, 1055
MlyI	GAGTC	3 cut(s)	253, 425, 576
MseI	TTAA	2 cut(s)	549, 891
MspA1I	CMGCKG	1 cut(s)	867
MspI	CCGG	1 cut(s)	485
MspR9I	CCNGG	4 cut(s)	285, 486, 758, 1046
MunI	CAATTG	3 cut(s)	366, 882, 1055
MvaI	CCWGG	3 cut(s)	285, 758, 1046
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	5 cut(s)	26, 377, 419, 505, 617
NciI	CCSGG	1 cut(s)	486
NdeII	GATC	9 cut(s)	92, 180, 347, 526, 651, 844, 945, 1003, 1078
NheI	GCTAGC	1 cut(s)	409
NlaIII	CATG	5 cut(s)	11, 208, 236, 652, 746
NlaIV	GGNNCC	3 cut(s)	154, 282, 1043
NmuCI	GTSAC	2 cut(s)	488, 1031
NsbI	TGCGCA	1 cut(s)	863
NspI	RCATGY	1 cut(s)	208
PagI	TCATGA	1 cut(s)	232
PciSI	GCTCTTC	1 cut(s)	234
PfeI	GAWTC	6 cut(s)	77, 266, 383, 601, 631, 912
PfoI	TCCNGGA	1 cut(s)	1044
PkrI	GCNGC	4 cut(s)	424, 501, 622, 866
PleI	GAGTC	3 cut(s)	253, 425, 575
PpsI	GAGTC	3 cut(s)	253, 425, 575
PpuMI	RGGWCCY	1 cut(s)	459
Psp124BI	GAGCTC	1 cut(s)	229
Psp5II	RGGWCCY	1 cut(s)	459
Psp6I	CCWGG	3 cut(s)	283, 756, 1044
PspGI	CCWGG	3 cut(s)	283, 756, 1044
PspN4I	GGNNCC	3 cut(s)	154, 282, 1043
PspPI	GGNCC	3 cut(s)	153, 459, 731
PspPPI	RGGWCCY	1 cut(s)	459
PstI	CTGCAG	1 cut(s)	100
PsuI	RGATCY	6 cut(s)	92, 347, 526, 945, 1003, 1078
PvuII	CAGCTG	1 cut(s)	867
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
SacI	GAGCTC	1 cut(s)	229
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	549, 891
SatI	GCNGC	4 cut(s)	423, 500, 621, 865
Sau3AI	GATC	9 cut(s)	92, 180, 347, 526, 651, 844, 945, 1003, 1078
Sau96I	GGNCC	3 cut(s)	153, 459, 731
SchI	GAGTC	3 cut(s)	253, 425, 576
ScrFI	CCNGG	4 cut(s)	285, 486, 758, 1046
SduI	GDGCHC	2 cut(s)	229, 757
SexAI	ACCWGGT	1 cut(s)	283
SfaNI	GCATC	3 cut(s)	226, 821, 916
SfcI	CTRYAG	2 cut(s)	96, 435
SinI	GGWCC	3 cut(s)	153, 459, 731
SmlI	CTYRAG	2 cut(s)	748, 1073
SmoI	CTYRAG	2 cut(s)	748, 1073
Sse9I	AATT	6 cut(s)	138, 366, 639, 882, 971, 1055
SsiI	CCGC	2 cut(s)	170, 620
SspMI	CTAG	5 cut(s)	263, 344, 410, 659, 920
SstI	GAGCTC	1 cut(s)	229
StyD4I	CCNGG	4 cut(s)	283, 484, 756, 1044
StyI	CCWWGG	2 cut(s)	15, 426
TaaI	ACNGT	2 cut(s)	277, 689
TaqI	TCGA	2 cut(s)	269, 924
TasI	AATT	6 cut(s)	138, 366, 639, 882, 971, 1055
TauI	GCSGC	1 cut(s)	623
TfiI	GAWTC	6 cut(s)	77, 266, 383, 601, 631, 912
Tru1I	TTAA	2 cut(s)	549, 891
Tru9I	TTAA	2 cut(s)	549, 891
TseFI	GTSAC	2 cut(s)	488, 1031
TseI	GCWGC	3 cut(s)	422, 499, 864
Tsp45I	GTSAC	2 cut(s)	488, 1031
TspDTI	ATGAA	6 cut(s)	117, 221, 684, 915, 925, 1057
VpaK11BI	GGWCC	3 cut(s)	153, 459, 731
XagI	CCTNNNNNAGG	2 cut(s)	288, 761
XbaI	TCTAGA	1 cut(s)	262
XceI	RCATGY	1 cut(s)	208
XspI	CTAG	5 cut(s)	263, 344, 410, 659, 920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.