Rh7AG220500
TCP Family

assists the folding of proteins upon ATP hydrolysis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0010305
Physical Location & Seq
Reverse (-)
20496864 .. 20504254
7391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG220500.1

Sequence Viewer

Length: 1251 bp
ATGGCTGTTTCCGGCCAGACGCCCGATATCATGGGCGACCGTCAGTACGGTCAGGACGTTCGCACTCAAAATGTGGTGGCCTGTCAAGCTATTGCCAATGTCGTCAAATCTTCACTTGGCCCTGTTGGTCTCGACAAGATGCTTGTCGATGATATTGGTGACGTGACTATTACAAATGATGGAGCTACCATACTCAAGATGCTAGAAGTCGAGCATCCTGCTGCCAAGGTACTTGTGGATCTGGCTGAGCTTCAAGACAAAGAAGTTGGAGATGGGACGACATCAGTTGTCATTCTTGCTGCAGAGTTGTTAAAGCGAGCAAATGATCTAGTGAAGCACAAAATTCACCCAACATCCATTATCAGTGGTTACAGGCTTGCTATGAGGGAAGCGTGCAAATATGTTGAGGAAAAGTTAGCCGTGAAGGTTGAAAAGCTCGGAAAAGATTGCCTAGTAAATTGTGCAAAAACAAGCATGTCCTCGAAGTTGATATCTGGTGACAGTGATTTCTTTGCAAATTTGGTTGTAGATGCTGTACAAGCTGTAAAGATGACCAATGCTCGGGGGGACATCAAGTACCCAATCAAGGGGATTAATATTTTGAAAGCTCATGGAAAAAGTGCAAGAGAAAGTTATCTCTTGAATGGATATGCACTAAATACAGGCCGTGCTGCACAAGGAATGCCACTTAAAGTCTCCCCTGCAAGGATTGCTTGCCTTGACTTGAATCTTCAGAAGACAAAAATGCAAATGGGTGTCCAAGTTTTAGTTAGCGACCCTAGGGAGCTTGAAAAAATCCGCCAAAGAGAAGCGGATATGACGAAAGAACGTATAGAGAAACTTCTTAAAGCTGGAGCAAATGTTATTCTGACTACAAAAGGGATTGATGATATGGCACTCAAGTATTTTGTGGAGGCTGGGGCTATCGCTGTAAGACGTGTTCAGAAAGAAGATATGCGCCATGTTGCCAAGGCTACGGGTGCAACAATGGTATCAACTTTCGCTGATATGGAAGGAGAGGAAACATTTGATTCTTCACTTCTTGGATCTGCAGATGAAGTTGTAGAGGAGCGCGTTTCTGATGATGATGTAATTTTGATAAAAGGGACCAAAACTAATAGTGCGGTCTCCTTGATCCTTAGAGGTGCAAATGACTACATGCTTGACGAGATGGAGAGAGCTCTTCATGATGCTCTATCTATTGTCAAGAGGACTCTAGAATCGAACACGGTAAACTTTGGCGCTTCCTGA

Protein Analysis

416

Amino Acids

45.14

Weight (kDa)

5.98

Isoelectric Point (pI)

27.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 31 - 415 3.9e-121 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1074
AciI CCGC 3 cut(s) 799, 812, 1124
AclWI GGATC 3 cut(s) 246, 1054, 1129
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 2 cut(s) 342, 517
AcuI CTGAAG 1 cut(s) 716
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 4 cut(s) 47, 231, 537, 578
AfiI CCNNNNNNNGG 4 cut(s) 561, 586, 587, 705
AflIII ACRYGT 1 cut(s) 937
AgsI TTSAA 6 cut(s) 254, 431, 604, 643, 727, 791
AjiI CACGTC 2 cut(s) 163, 938
AluBI AGCT 9 cut(s) 89, 185, 250, 436, 542, 608, 787, 851, 1181
AluI AGCT 9 cut(s) 89, 185, 250, 436, 542, 608, 787, 851, 1181
Alw21I GWGCWC 1 cut(s) 1183
Alw26I GTCTC 3 cut(s) 134, 700, 1132
AlwI GGATC 3 cut(s) 246, 1054, 1129
Ama87I CYCGRG 1 cut(s) 561
AoxI GGCC 4 cut(s) 13, 78, 118, 664
ApeKI GCWGC 3 cut(s) 221, 299, 671
ApoI RAATTY 2 cut(s) 342, 517
AseI ATTAAT 1 cut(s) 594
AspA2I CCTAGG 1 cut(s) 779
AspLEI GCGC 3 cut(s) 960, 1074, 1244
AspS9I GGNCC 2 cut(s) 119, 1107
AsuHPI GGTGA 3 cut(s) 170, 338, 509
AvaI CYCGRG 1 cut(s) 561
AvaII GGWCC 1 cut(s) 1107
AvrII CCTAGG 1 cut(s) 779
BaeI ACNNNNGTAYC 2 cut(s) 975, 1008
BanII GRGCYC 1 cut(s) 1183
BbsI GAAGAC 1 cut(s) 743
Bbv12I GWGCWC 1 cut(s) 1183
BbvI GCAGC 3 cut(s) 208, 286, 658
BccI CCATC 3 cut(s) 173, 266, 1165
BceAI ACGGC 2 cut(s) 404, 651
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BcoDI GTCTC 3 cut(s) 134, 700, 1132
BfaI CTAG 5 cut(s) 203, 329, 452, 780, 1217
BfmI CTRYAG 2 cut(s) 300, 1050
BfoI RGCGCY 1 cut(s) 1245
BisI GCNGC 3 cut(s) 222, 300, 672
BlnI CCTAGG 1 cut(s) 779
BlpI GCTNAGC 1 cut(s) 246
BlsI GCNGC 3 cut(s) 223, 301, 673
Bme18I GGWCC 1 cut(s) 1107
BmeT110I CYCGRG 1 cut(s) 561
BmgBI CACGTC 2 cut(s) 163, 938
BmgT120I GGNCC 2 cut(s) 119, 1107
BmiI GGNNCC 1 cut(s) 1108
BmsI GCATC 5 cut(s) 129, 189, 223, 520, 1180
BpiI GAAGAC 1 cut(s) 743
BpmI CTGGAG 1 cut(s) 873
Bpu1102I GCTNAGC 1 cut(s) 246
BpuEI CTTGAG 2 cut(s) 179, 884
BsaHI GRCGYC 1 cut(s) 20
BsaI GGTCTC 2 cut(s) 134, 1132
BsaJI CCNNGG 3 cut(s) 225, 779, 969
BsaXI ACNNNNNCTCC 2 cut(s) 846, 876
Bsc4I CCNNNNNNNGG 4 cut(s) 561, 586, 587, 705
BseDI CCNNGG 3 cut(s) 225, 779, 969
BseGI GGATG 2 cut(s) 214, 353
BseLI CCNNNNNNNGG 4 cut(s) 561, 586, 587, 705
BseMII CTCAG 1 cut(s) 237
BseRI GAGGAG 1 cut(s) 1082
BseXI GCAGC 3 cut(s) 208, 286, 658
BseYI CCCAGC 1 cut(s) 917
BsgI GTGCAG 1 cut(s) 657
Bsh1236I CGCG 1 cut(s) 1074
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 4 cut(s) 15, 80, 120, 666
BsiEI CGRYCG 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 1183
BsiHKCI CYCGRG 1 cut(s) 561
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 3 cut(s) 289, 581, 1120
BslI CCNNNNNNNGG 4 cut(s) 561, 586, 587, 705
BsmAI GTCTC 3 cut(s) 134, 700, 1132
BsmFI GGGAC 3 cut(s) 289, 581, 1120
BsmI GAATGC 1 cut(s) 687
BsnI GGCC 4 cut(s) 15, 80, 120, 666
Bso31I GGTCTC 2 cut(s) 134, 1132
BsoBI CYCGRG 1 cut(s) 561
Bsp1286I GDGCHC 1 cut(s) 1183
Bsp1407I TGTACA 1 cut(s) 535
Bsp143I GATC 4 cut(s) 238, 325, 1046, 1134
Bsp1720I GCTNAGC 1 cut(s) 246
BspACI CCGC 3 cut(s) 799, 812, 1124
BspANI GGCC 4 cut(s) 15, 80, 120, 666
BspCNI CTCAG 1 cut(s) 238
BspFNI CGCG 1 cut(s) 1074
BspHI TCATGA 1 cut(s) 1186
BspLI GGNNCC 1 cut(s) 1108
BspMAI CTGCAG 2 cut(s) 304, 1054
BspPI GGATC 3 cut(s) 246, 1054, 1129
BspQI GCTCTTC 1 cut(s) 1188
BspTNI GGTCTC 2 cut(s) 134, 1132
BsrGI TGTACA 1 cut(s) 535
BssECI CCNNGG 3 cut(s) 225, 779, 969
BssMI GATC 4 cut(s) 238, 325, 1046, 1134
BssNI GRCGYC 1 cut(s) 20
BssT1I CCWWGG 3 cut(s) 225, 779, 969
Bst4CI ACNGT 4 cut(s) 41, 50, 503, 1231
Bst6I CTCTTC 1 cut(s) 1188
BstACI GRCGYC 1 cut(s) 20
BstAPI GCANNNNNTGC 1 cut(s) 710
BstAUI TGTACA 1 cut(s) 535
BstC8I GCNNGC 4 cut(s) 318, 378, 394, 715
BstDEI CTNAG 2 cut(s) 246, 1139
BstF5I GGATG 2 cut(s) 214, 353
BstFNI CGCG 1 cut(s) 1074
BstH2I RGCGCY 1 cut(s) 1245
BstHHI GCGC 3 cut(s) 960, 1074, 1244
BstKTI GATC 4 cut(s) 241, 328, 1049, 1137
BstMAI GTCTC 3 cut(s) 134, 700, 1132
BstMBI GATC 4 cut(s) 238, 325, 1046, 1134
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 4 cut(s) 86, 539, 710, 980
BstNSI RCATGY 2 cut(s) 478, 1162
BstSFI CTRYAG 2 cut(s) 300, 1050
BstUI CGCG 1 cut(s) 1074
BstV1I GCAGC 3 cut(s) 208, 286, 658
BstV2I GAAGAC 1 cut(s) 743
BstX2I RGATCY 2 cut(s) 238, 1046
BstYI RGATCY 2 cut(s) 238, 1046
BsuRI GGCC 4 cut(s) 15, 80, 120, 666
BtrI CACGTC 2 cut(s) 163, 938
BtsCI GGATG 2 cut(s) 214, 353
BtsIMutI CAGTG 2 cut(s) 370, 508
Cac8I GCNNGC 4 cut(s) 318, 378, 394, 715
CciI TCATGA 1 cut(s) 1186
CfoI GCGC 3 cut(s) 960, 1074, 1244
Cfr13I GGNCC 2 cut(s) 119, 1107
CseI GACGC 1 cut(s) 28
Csp6I GTAC 4 cut(s) 46, 230, 536, 577
CviAII CATG 6 cut(s) 31, 475, 611, 962, 1159, 1187
CviQI GTAC 4 cut(s) 46, 230, 536, 577
DdeI CTNAG 2 cut(s) 246, 1139
DpnI GATC 4 cut(s) 240, 327, 1048, 1136
DpnII GATC 4 cut(s) 238, 325, 1046, 1134
EaeI YGGCCR 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 1188
EarI CTCTTC 1 cut(s) 1188
EciI GGCGGA 1 cut(s) 788
Ecl136II GAGCTC 1 cut(s) 1181
Eco130I CCWWGG 3 cut(s) 225, 779, 969
Eco24I GRGCYC 1 cut(s) 1183
Eco31I GGTCTC 2 cut(s) 134, 1132
Eco32I GATATC 2 cut(s) 28, 492
Eco47I GGWCC 1 cut(s) 1107
Eco53kI GAGCTC 1 cut(s) 1181
Eco57I CTGAAG 1 cut(s) 716
Eco88I CYCGRG 1 cut(s) 561
EcoICRI GAGCTC 1 cut(s) 1181
EcoRV GATATC 2 cut(s) 28, 492
EcoT14I CCWWGG 3 cut(s) 225, 779, 969
EcoT38I GRGCYC 1 cut(s) 1183
ErhI CCWWGG 3 cut(s) 225, 779, 969
FaeI CATG 6 cut(s) 34, 478, 614, 965, 1162, 1190
FalI AAGNNNNNCTT 2 cut(s) 697, 729
FaqI GGGAC 3 cut(s) 289, 581, 1120
FatI CATG 6 cut(s) 30, 474, 610, 961, 1158, 1186
Fnu4HI GCNGC 3 cut(s) 222, 300, 672
FokI GGATG 2 cut(s) 201, 340
FriOI GRGCYC 1 cut(s) 1183
Fsp4HI GCNGC 3 cut(s) 222, 300, 672
FspBI CTAG 5 cut(s) 203, 329, 452, 780, 1217
GlaI GCGC 3 cut(s) 959, 1073, 1243
GluI GCNGC 3 cut(s) 222, 300, 672
GsaI CCCAGC 1 cut(s) 921
GsuI CTGGAG 1 cut(s) 873
HaeII RGCGCY 1 cut(s) 1245
HaeIII GGCC 4 cut(s) 15, 80, 120, 666
HapII CCGG 1 cut(s) 12
HgaI GACGC 1 cut(s) 28
HhaI GCGC 3 cut(s) 960, 1074, 1244
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 6 cut(s) 34, 478, 614, 965, 1162, 1190
Hin6I GCGC 3 cut(s) 958, 1072, 1242
HinP1I GCGC 3 cut(s) 958, 1072, 1242
HinfI GANTC 4 cut(s) 727, 1031, 1213, 1220
HpaII CCGG 1 cut(s) 12
HphI GGTGA 3 cut(s) 170, 338, 509
Hpy166II GTNNAC 1 cut(s) 1234
Hpy188I TCNGA 5 cut(s) 440, 735, 870, 945, 1081
Hpy188III TCNNGA 9 cut(s) 53, 131, 196, 254, 640, 1187, 1207, 1217, 1248
Hpy8I GTNNAC 1 cut(s) 1234
HpyAV CCTTC 2 cut(s) 418, 1007
HpyCH4III ACNGT 4 cut(s) 41, 50, 503, 1231
HpyCH4IV ACGT 4 cut(s) 57, 162, 829, 937
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 539, 710, 980
HpyF3I CTNAG 2 cut(s) 246, 1139
HpySE526I ACGT 4 cut(s) 57, 162, 829, 937
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 6 cut(s) 34, 478, 614, 965, 1162, 1190
HspAI GCGC 3 cut(s) 958, 1072, 1242
Kzo9I GATC 4 cut(s) 238, 325, 1046, 1134
LguI GCTCTTC 1 cut(s) 1188
LmnI GCTCC 4 cut(s) 182, 784, 854, 1069
Lsp1109I GCAGC 3 cut(s) 208, 286, 658
LweI GCATC 5 cut(s) 129, 189, 223, 520, 1180
MaeI CTAG 5 cut(s) 203, 329, 452, 780, 1217
MaeII ACGT 4 cut(s) 57, 162, 829, 937
MaeIII GTNAC 4 cut(s) 158, 163, 368, 497
MalI GATC 4 cut(s) 240, 327, 1048, 1136
MboI GATC 4 cut(s) 238, 325, 1046, 1134
MboII GAAGA 6 cut(s) 102, 722, 748, 962, 1026, 1175
MflI RGATCY 2 cut(s) 238, 1046
MhlI GDGCHC 1 cut(s) 1183
MluCI AATT 4 cut(s) 342, 457, 517, 1092
MlyI GAGTC 1 cut(s) 1207
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 8 cut(s) 378, 400, 490, 907, 1012, 1060, 1136, 1203
MseI TTAA 4 cut(s) 311, 594, 690, 846
MspI CCGG 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 687
MvnI CGCG 1 cut(s) 1074
MwoI GCNNNNNNNGC 4 cut(s) 86, 539, 710, 980
NdeII GATC 4 cut(s) 238, 325, 1046, 1134
NlaIII CATG 6 cut(s) 34, 478, 614, 965, 1162, 1190
NlaIV GGNNCC 1 cut(s) 1108
NmuCI GTSAC 3 cut(s) 158, 163, 497
NspI RCATGY 2 cut(s) 478, 1162
PagI TCATGA 1 cut(s) 1186
PciSI GCTCTTC 1 cut(s) 1188
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PctI GAATGC 1 cut(s) 687
PfeI GAWTC 3 cut(s) 727, 1031, 1220
PkrI GCNGC 3 cut(s) 223, 301, 673
PleI GAGTC 1 cut(s) 1207
PpsI GAGTC 1 cut(s) 1207
PshBI ATTAAT 1 cut(s) 594
Psp124BI GAGCTC 1 cut(s) 1183
PspFI CCCAGC 1 cut(s) 917
PspN4I GGNNCC 1 cut(s) 1108
PspPI GGNCC 2 cut(s) 119, 1107
PsrI GAACNNNNNNTAC 2 cut(s) 924, 956
PstI CTGCAG 2 cut(s) 304, 1054
PsuI RGATCY 2 cut(s) 238, 1046
RsaI GTAC 4 cut(s) 47, 231, 537, 578
RsaNI GTAC 4 cut(s) 46, 230, 536, 577
SacI GAGCTC 1 cut(s) 1183
SapI GCTCTTC 1 cut(s) 1188
SaqAI TTAA 4 cut(s) 311, 594, 690, 846
SatI GCNGC 3 cut(s) 222, 300, 672
Sau3AI GATC 4 cut(s) 238, 325, 1046, 1134
Sau96I GGNCC 2 cut(s) 119, 1107
SchI GAGTC 1 cut(s) 1207
SduI GDGCHC 1 cut(s) 1183
SfaNI GCATC 5 cut(s) 129, 189, 223, 520, 1180
SfcI CTRYAG 2 cut(s) 300, 1050
SinI GGWCC 1 cut(s) 1107
SmlI CTYRAG 2 cut(s) 194, 899
SmoI CTYRAG 2 cut(s) 194, 899
Sse9I AATT 4 cut(s) 342, 457, 517, 1092
SsiI CCGC 3 cut(s) 799, 812, 1124
SspI AATATT 1 cut(s) 598
SspMI CTAG 5 cut(s) 203, 329, 452, 780, 1217
SstI GAGCTC 1 cut(s) 1183
StyI CCWWGG 3 cut(s) 225, 779, 969
TaaI ACNGT 4 cut(s) 41, 50, 503, 1231
TaiI ACGT 4 cut(s) 60, 165, 832, 940
TaqI TCGA 5 cut(s) 132, 147, 210, 482, 1223
TasI AATT 4 cut(s) 342, 457, 517, 1092
TatI WGTACW 1 cut(s) 535
TfiI GAWTC 3 cut(s) 727, 1031, 1220
Tru1I TTAA 4 cut(s) 311, 594, 690, 846
Tru9I TTAA 4 cut(s) 311, 594, 690, 846
TscAI CASTG 2 cut(s) 370, 508
TseFI GTSAC 3 cut(s) 158, 163, 497
TseI GCWGC 3 cut(s) 221, 299, 671
Tsp45I GTSAC 3 cut(s) 158, 163, 497
TspDTI ATGAA 2 cut(s) 1071, 1175
TspRI CASTG 2 cut(s) 370, 508
VpaK11BI GGWCC 1 cut(s) 1107
VspI ATTAAT 1 cut(s) 594
XapI RAATTY 2 cut(s) 342, 517
XbaI TCTAGA 1 cut(s) 1216
XceI RCATGY 2 cut(s) 478, 1162
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
XmaJI CCTAGG 1 cut(s) 779
XspI CTAG 5 cut(s) 203, 329, 452, 780, 1217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.