Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0010305

Physical Location & Seq

Genomic Coordinates Forward (+)

5115737 .. 5120448

Gene Structure 4712 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g04080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGACCATGTCCTCTCAGACCCCCGATATCTTGGGCGACCGTCAGTACGGTCAGGACGTCCGCACTCAAAATGTGATGGCCTGCCAAGCTGTTGCAAACATTGTCAAATCTTCACTCGGCCCCGTTGGCCTCGACAAGATGCTTGTCGATGATATTGGTGATGTGACTATTACTAATGATGGAGCTACTATACTCAAGATGTTAGAAGTTGAGCATCCTGCTGCCAAGGTGCTTGTGGAGTTGGCTGAGCTCCAAGATCGAGAAGTTGGAGATGGGACGACATCAGTGGTGATTGTAGCTGCAGAAGAGCAAATCGATCTTGTAAGGAATAAGATTCACCCAACATCCATAATCAGTGGTTACAGACTTGCTATGAGGGAAGCATGCAAATATGTTGAGGAAAAATTAGCTGTGAAGGTTGACAAGCTTGGAAAAGATTCTCTAGTAAATTGTGCAAAGACAAGCATGTCCTCAAAGTTGATAGGCAGTGACAGTGACTTCTTTGCAAATATGGTTGTCGATGCAGTACAAGCTGTAAAGATGACCAATGCTCGGGGGGAAGTCAAGTACCCAATCAAGGGGATTAATGTTTTGAAAGCTCATGGAAAAAGTGCAAGAGATAGCTATCTCTTAACTGGTTATGCACTAAATACAGGCCGTGCTGCACAAGGAATGCCACTTAGAGTTTCCCCTGCAAAGATTGCCTGTCTTGACTTTAATCTTCAGAAAACCAAAATGCAAATGGGTGTCCAAGTTTTAGTTAGTGATCCCAGGGAGCTTGAAAAAATTCGCCAAAGAGAAGCTGATATGACAAAAGAGCGTATTGAAAAACTTCTGAAAGCTGGAGCAAATGTTATTCTGACTACCAAGGGGATTGACGACATGGCACTCAAGTATTTTGTGGAGGCTGGGGCTATCGCTGTAAGACGTATTCAGAAAGAAGATATGCGCCATGTTGCTAAGGCTACAGGTGCAACAATGGTTTCAACTTTCGCTGATATGGAAGGGGAGGAAACATTCGATACGTCACTTCTTGGATCTGCCGATGAAGTTGTAGAGGAGCGCATTTCTGATGATGATGTGATTTTGATAAAAGGAACAAAAAATAACAGTGCGGTGTCATTGATCCATCAGAGGTGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0032991 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

382

Amino Acids

41.52

Weight (kDa)

6.06

Isoelectric Point (pI)

28.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20050
fragaria_vesca	FvH4_5g20270
malus_domestica	MD04G1052300.v1.1 MD06G1047900.v1.1
prunus_persica	Prupe.5G058100_v2.0.a1
pyrus_communis	pycom04g04600 pycom06g04080 pycom06g04090
rosa_chinensis	RchiOBHm_Chr7g0205331
rosa_laevigata	RLG00000003387
rosa_multiflora	Rmu_sc0009317.1_g000004 Rmu_sc0009725.1_g000010 Rmu_ssc0000004.1_g000023
rosa_roxburghii	Rroxscaffold_3G00252460
rosa_rugosa	Rorug07G0089800
rosa_samantha	Rh7AG220500 Rh7BG216600 Rh7CG233400 Rh7CG233500 Rh7DG227400
rosa_wichuraiana	Rw7G019060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	466
AatII	GACGTC	1 cut(s)	60
AciI	CCGC	2 cut(s)	61, 1115
AclWI	GGATC	3 cut(s)	761, 1045, 1120
AcsI	RAATTY	1 cut(s)	786
AcuI	CTGAAG	1 cut(s)	707
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	3 cut(s)	47, 528, 569
AfiI	CCNNNNNNNGG	3 cut(s)	552, 577, 578
AgsI	TTSAA	4 cut(s)	595, 782, 827, 987
AjnI	CCWGG	1 cut(s)	770
Alw21I	GWGCWC	1 cut(s)	252
AlwI	GGATC	3 cut(s)	761, 1045, 1120
Ama87I	CYCGRG	1 cut(s)	552
AoxI	GGCC	4 cut(s)	78, 118, 127, 655
ApeKI	GCWGC	3 cut(s)	221, 299, 662
ApoI	RAATTY	1 cut(s)	786
AseI	ATTAAT	1 cut(s)	585
Asp700I	GAANNNNTTC	3 cut(s)	436, 786, 831
AspLEI	GCGC	2 cut(s)	951, 1065
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	3 cut(s)	170, 301, 329
AvaI	CYCGRG	1 cut(s)	552
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	3 cut(s)	208, 286, 649
BccI	CCATC	4 cut(s)	70, 173, 266, 1137
BceAI	ACGGC	1 cut(s)	642
BciT130I	CCWGG	1 cut(s)	772
BfaI	CTAG	1 cut(s)	443
BfmI	CTRYAG	2 cut(s)	300, 966
BglI	GCCNNNNNGGC	1 cut(s)	126
BisI	GCNGC	3 cut(s)	222, 300, 663
BlpI	GCTNAGC	1 cut(s)	246
BlsI	GCNGC	3 cut(s)	223, 301, 664
Bme1390I	CCNGG	1 cut(s)	772
BmeT110I	CYCGRG	1 cut(s)	552
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	772
BmsI	GCATC	3 cut(s)	129, 223, 511
BpmI	CTGGAG	1 cut(s)	864
Bpu10I	CCTNAGC	1 cut(s)	960
Bpu1102I	GCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	2 cut(s)	179, 875
Bsa29I	ATCGAT	1 cut(s)	315
BsaBI	GATNNNNATC	1 cut(s)	624
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	4 cut(s)	225, 770, 771, 867
BsaXI	ACNNNNNCTCC	2 cut(s)	837, 867
Bsc4I	CCNNNNNNNGG	3 cut(s)	552, 577, 578
Bse1I	ACTGG	1 cut(s)	640
Bse8I	GATNNNNATC	1 cut(s)	624
BseBI	CCWGG	1 cut(s)	772
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	4 cut(s)	225, 770, 771, 867
BseGI	GGATG	2 cut(s)	214, 344
BseJI	GATNNNNATC	1 cut(s)	624
BseLI	CCNNNNNNNGG	3 cut(s)	552, 577, 578
BseMII	CTCAG	2 cut(s)	29, 237
BseNI	ACTGG	1 cut(s)	640
BseRI	GAGGAG	1 cut(s)	1073
BseXI	GCAGC	3 cut(s)	208, 286, 649
BseYI	CCCAGC	1 cut(s)	908
BsgI	GTGCAG	1 cut(s)	648
Bsh1285I	CGRYCG	1 cut(s)	40
BshFI	GGCC	4 cut(s)	80, 120, 129, 657
BshVI	ATCGAT	1 cut(s)	315
BsiEI	CGRYCG	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	552
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	3 cut(s)	552, 577, 578
BsmFI	GGGAC	1 cut(s)	289
BsmI	GAATGC	1 cut(s)	678
BsnI	GGCC	4 cut(s)	80, 120, 129, 657
BsoBI	CYCGRG	1 cut(s)	552
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	5 cut(s)	256, 316, 766, 1037, 1125
Bsp1720I	GCTNAGC	1 cut(s)	246
BspACI	CCGC	2 cut(s)	61, 1115
BspANI	GGCC	4 cut(s)	80, 120, 129, 657
BspCNI	CTCAG	2 cut(s)	28, 238
BspDI	ATCGAT	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	121
BspMAI	CTGCAG	1 cut(s)	304
BspPI	GGATC	3 cut(s)	761, 1045, 1120
BspQI	GCTCTTC	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	640
BssECI	CCNNGG	4 cut(s)	225, 770, 771, 867
BssMI	GATC	5 cut(s)	256, 316, 766, 1037, 1125
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	2 cut(s)	225, 867
Bst2UI	CCWGG	1 cut(s)	772
Bst4CI	ACNGT	4 cut(s)	41, 50, 494, 1112
Bst6I	CTCTTC	1 cut(s)	300
BstACI	GRCGYC	1 cut(s)	57
BstAPI	GCANNNNNTGC	1 cut(s)	701
BstC8I	GCNNGC	2 cut(s)	82, 385
BstDEI	CTNAG	4 cut(s)	15, 246, 680, 960
BstF5I	GGATG	2 cut(s)	214, 344
BstHHI	GCGC	2 cut(s)	951, 1065
BstKTI	GATC	5 cut(s)	259, 319, 769, 1040, 1128
BstMBI	GATC	5 cut(s)	256, 316, 766, 1037, 1125
BstMCI	CGRYCG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 126, 530, 701, 971
BstNI	CCWGG	1 cut(s)	772
BstNSI	RCATGY	2 cut(s)	387, 469
BstSCI	CCNGG	1 cut(s)	770
BstSFI	CTRYAG	2 cut(s)	300, 966
BstV1I	GCAGC	3 cut(s)	208, 286, 649
BstX2I	RGATCY	1 cut(s)	1037
BstYI	RGATCY	1 cut(s)	1037
Bsu15I	ATCGAT	1 cut(s)	315
BsuRI	GGCC	4 cut(s)	80, 120, 129, 657
BsuTUI	ATCGAT	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	214, 344
BtsI	GCAGTG	1 cut(s)	493
BtsIMutI	CAGTG	5 cut(s)	291, 361, 493, 499, 1117
Cac8I	GCNNGC	2 cut(s)	82, 385
CfoI	GCGC	2 cut(s)	951, 1065
Cfr13I	GGNCC	1 cut(s)	119
ClaI	ATCGAT	1 cut(s)	315
Csp6I	GTAC	3 cut(s)	46, 527, 568
CviAII	CATG	6 cut(s)	7, 384, 466, 602, 883, 953
CviQI	GTAC	3 cut(s)	46, 527, 568
DdeI	CTNAG	4 cut(s)	15, 246, 680, 960
DpnI	GATC	5 cut(s)	258, 318, 768, 1039, 1127
DpnII	GATC	5 cut(s)	256, 316, 766, 1037, 1125
DrdI	GACNNNNNNGTC	1 cut(s)	466
DseDI	GACNNNNNNGTC	1 cut(s)	466
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Ecl136II	GAGCTC	1 cut(s)	250
Eco130I	CCWWGG	2 cut(s)	225, 867
Eco24I	GRGCYC	1 cut(s)	252
Eco32I	GATATC	1 cut(s)	28
Eco53kI	GAGCTC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	707
Eco88I	CYCGRG	1 cut(s)	552
EcoICRI	GAGCTC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	770
EcoRV	GATATC	1 cut(s)	28
EcoT14I	CCWWGG	2 cut(s)	225, 867
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	2 cut(s)	225, 867
FaeI	CATG	6 cut(s)	10, 387, 469, 605, 886, 956
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	6 cut(s)	6, 383, 465, 601, 882, 952
Fnu4HI	GCNGC	3 cut(s)	222, 300, 663
FokI	GGATG	2 cut(s)	201, 331
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	3 cut(s)	222, 300, 663
FspBI	CTAG	1 cut(s)	443
GlaI	GCGC	2 cut(s)	950, 1064
GluI	GCNGC	3 cut(s)	222, 300, 663
GsaI	CCCAGC	1 cut(s)	912
GsuI	CTGGAG	1 cut(s)	864
HaeIII	GGCC	4 cut(s)	80, 120, 129, 657
HhaI	GCGC	2 cut(s)	951, 1065
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	6 cut(s)	10, 387, 469, 605, 886, 956
Hin6I	GCGC	2 cut(s)	949, 1063
HinP1I	GCGC	2 cut(s)	949, 1063
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	2 cut(s)	334, 437
HphI	GGTGA	3 cut(s)	170, 301, 329
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	7 cut(s)	18, 726, 837, 861, 936, 1072, 1134
Hpy188III	TCNNGA	4 cut(s)	53, 196, 260, 710
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	2 cut(s)	409, 998
HpyCH4III	ACNGT	4 cut(s)	41, 50, 494, 1112
HpyCH4IV	ACGT	3 cut(s)	57, 928, 1025
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 126, 530, 701, 971
HpyF3I	CTNAG	4 cut(s)	15, 246, 680, 960
HpySE526I	ACGT	3 cut(s)	57, 928, 1025
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	6 cut(s)	10, 387, 469, 605, 886, 956
HspAI	GCGC	2 cut(s)	949, 1063
Kzo9I	GATC	5 cut(s)	256, 316, 766, 1037, 1125
LguI	GCTCTTC	1 cut(s)	300
LmnI	GCTCC	5 cut(s)	182, 255, 775, 845, 1060
Lsp1109I	GCAGC	3 cut(s)	208, 286, 649
LweI	GCATC	3 cut(s)	129, 223, 511
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	3 cut(s)	57, 928, 1025
MaeIII	GTNAC	5 cut(s)	163, 359, 488, 494, 1026
MalI	GATC	5 cut(s)	258, 318, 768, 1039, 1127
MboI	GATC	5 cut(s)	256, 316, 766, 1037, 1125
MboII	GAAGA	4 cut(s)	102, 317, 713, 953
MflI	RGATCY	1 cut(s)	1037
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	3 cut(s)	404, 448, 786
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	9 cut(s)	22, 140, 369, 391, 481, 898, 1003, 1051, 1128
MroXI	GAANNNNTTC	3 cut(s)	436, 786, 831
MseI	TTAA	3 cut(s)	585, 632, 717
MspR9I	CCNGG	1 cut(s)	772
Mva1269I	GAATGC	1 cut(s)	678
MvaI	CCWGG	1 cut(s)	772
MwoI	GCNNNNNNNGC	5 cut(s)	86, 126, 530, 701, 971
NdeII	GATC	5 cut(s)	256, 316, 766, 1037, 1125
NlaIII	CATG	6 cut(s)	10, 387, 469, 605, 886, 956
NlaIV	GGNNCC	1 cut(s)	121
NmeAIII	GCCGAG	1 cut(s)	96
NmuCI	GTSAC	4 cut(s)	163, 488, 494, 1026
NspI	RCATGY	2 cut(s)	387, 469
PaeI	GCATGC	1 cut(s)	387
PasI	CCCWGGG	1 cut(s)	771
PciSI	GCTCTTC	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PctI	GAATGC	1 cut(s)	678
PdmI	GAANNNNTTC	3 cut(s)	436, 786, 831
PfeI	GAWTC	2 cut(s)	334, 437
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	3 cut(s)	223, 301, 664
PshBI	ATTAAT	1 cut(s)	585
Psp124BI	GAGCTC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	770
PspFI	CCCAGC	1 cut(s)	908
PspGI	CCWGG	1 cut(s)	770
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	1037
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	3 cut(s)	47, 528, 569
RsaNI	GTAC	3 cut(s)	46, 527, 568
SacI	GAGCTC	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	300
SaqAI	TTAA	3 cut(s)	585, 632, 717
SatI	GCNGC	3 cut(s)	222, 300, 663
Sau3AI	GATC	5 cut(s)	256, 316, 766, 1037, 1125
Sau96I	GGNCC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	772
SduI	GDGCHC	1 cut(s)	252
SfaNI	GCATC	3 cut(s)	129, 223, 511
SfcI	CTRYAG	2 cut(s)	300, 966
SfiI	GGCCNNNNNGGCC	1 cut(s)	126
SmlI	CTYRAG	2 cut(s)	194, 890
SmoI	CTYRAG	2 cut(s)	194, 890
SphI	GCATGC	1 cut(s)	387
Sse9I	AATT	3 cut(s)	404, 448, 786
SsiI	CCGC	2 cut(s)	61, 1115
SspMI	CTAG	1 cut(s)	443
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	770
StyI	CCWWGG	2 cut(s)	225, 867
TaaI	ACNGT	4 cut(s)	41, 50, 494, 1112
TaiI	ACGT	3 cut(s)	60, 931, 1028
TaqI	TCGA	6 cut(s)	132, 147, 259, 315, 519, 1020
TasI	AATT	3 cut(s)	404, 448, 786
TatI	WGTACW	1 cut(s)	526
TfiI	GAWTC	2 cut(s)	334, 437
Tru1I	TTAA	3 cut(s)	585, 632, 717
Tru9I	TTAA	3 cut(s)	585, 632, 717
TscAI	CASTG	5 cut(s)	291, 361, 493, 499, 1117
TseFI	GTSAC	4 cut(s)	163, 488, 494, 1026
TseI	GCWGC	3 cut(s)	221, 299, 662
Tsp45I	GTSAC	4 cut(s)	163, 488, 494, 1026
TspDTI	ATGAA	1 cut(s)	1062
TspRI	CASTG	5 cut(s)	291, 361, 493, 499, 1117
Tth111I	GACNNNGTC	1 cut(s)	7
VspI	ATTAAT	1 cut(s)	585
XapI	RAATTY	1 cut(s)	786
XceI	RCATGY	2 cut(s)	387, 469
XcmI	CCANNNNNNNNNTGG	2 cut(s)	232, 739
XmnI	GAANNNNTTC	3 cut(s)	436, 786, 831
XspI	CTAG	1 cut(s)	443
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.