Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0010305

Physical Location & Seq

Genomic Coordinates Forward (+)

5120522 .. 5122018

Gene Structure 1497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g04090.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGTGGTACCAGGTGGAGGTGCAGTTGAGTCCGCATTGTCTGTGTATTTGGAGAGTTTTGCTACAACATTAGGATCACGTGAGCAGTTGGCAATTGCTGAGTTTGCTGAAGCTTTGTTGATTATACCAAAGGTGCTTGCCGTCAATGCTGCCAAGGATTCTACAGATCTAGTTTCAATACTACGGGCCAACCACCACAGGGCACAAACCAAGGCAACAACCAAGACTGACAAGAAGGATAAGGATTATTCTAGCATGGGCTTAGACCTATTAAAGGGAGAAGTTCGTAACAACCTTGAAGCCGGAGTCATTGAGCCTGCAATGAGTAAAGTGAAGATAATTCAGTTTGCTACTGAAGCAGCTATTACCATTCTCCGAATTGATGACATGATCAGGCTAGTCAAGGATGAAAGTCAAGAGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0032991 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

142

Amino Acids

15.2

Weight (kDa)

5.42

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20050
fragaria_vesca	FvH4_5g20270
malus_domestica	MD04G1052300.v1.1 MD06G1047900.v1.1
prunus_persica	Prupe.5G058100_v2.0.a1
pyrus_communis	pycom04g04600 pycom06g04080 pycom06g04090
rosa_chinensis	RchiOBHm_Chr7g0205331
rosa_laevigata	RLG00000003387
rosa_multiflora	Rmu_sc0009317.1_g000004 Rmu_sc0009725.1_g000010 Rmu_ssc0000004.1_g000023
rosa_roxburghii	Rroxscaffold_3G00252460
rosa_rugosa	Rorug07G0089800
rosa_samantha	Rh7AG220500 Rh7BG216600 Rh7CG233400 Rh7CG233500 Rh7DG227400
rosa_wichuraiana	Rw7G019060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	7
AccB1I	GGYRCC	1 cut(s)	7
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	1 cut(s)	82
AcuI	CTGAAG	2 cut(s)	129, 375
AcvI	CACGTG	1 cut(s)	80
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	3 cut(s)	17, 199, 274
AgsI	TTSAA	2 cut(s)	177, 299
AjnI	CCWGG	1 cut(s)	10
AluBI	AGCT	2 cut(s)	113, 362
AluI	AGCT	2 cut(s)	113, 362
AlwI	GGATC	1 cut(s)	82
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	2 cut(s)	149, 359
Asp718I	GGTACC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	186
BaeGI	GKGCMC	1 cut(s)	205
BanI	GGYRCC	1 cut(s)	7
BbrPI	CACGTG	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	136, 371
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	12
BclI	TGATCA	1 cut(s)	390
BfaI	CTAG	3 cut(s)	170, 252, 398
BfmI	CTRYAG	1 cut(s)	162
BglII	AGATCT	1 cut(s)	166
BisI	GCNGC	2 cut(s)	150, 360
BlsI	GCNGC	2 cut(s)	151, 361
Bme1390I	CCNGG	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	12
BsaAI	YACGTR	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	153, 210
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 199, 274
Bse3DI	GCAATG	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	12
BseDI	CCNNGG	2 cut(s)	153, 210
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	3 cut(s)	17, 199, 274
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	90
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	2 cut(s)	136, 371
BsgI	GTGCAG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	188
BshNI	GGYRCC	1 cut(s)	7
BsiSI	CCGG	1 cut(s)	303
BslI	CCNNNNNNNGG	3 cut(s)	17, 199, 274
BsnI	GGCC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	3 cut(s)	74, 166, 390
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	327
BssECI	CCNNGG	2 cut(s)	153, 210
BssMI	GATC	3 cut(s)	74, 166, 390
BssT1I	CCWWGG	2 cut(s)	153, 210
Bst2UI	CCWGG	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	138, 318
BstDEI	CTNAG	2 cut(s)	99, 262
BstENI	CCTNNNNNAGG	1 cut(s)	272
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	3 cut(s)	77, 169, 393
BstMBI	GATC	3 cut(s)	74, 166, 390
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 146, 356
BstNI	CCWGG	1 cut(s)	12
BstSCI	CCNGG	1 cut(s)	10
BstSFI	CTRYAG	1 cut(s)	162
BstSLI	GKGCMC	1 cut(s)	205
BstV1I	GCAGC	2 cut(s)	136, 371
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	412
Cac8I	GCNNGC	2 cut(s)	138, 318
Cfr13I	GGNCC	1 cut(s)	186
CsiI	ACCWGGT	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	2 cut(s)	256, 388
CviJI	RGCY	7 cut(s)	113, 188, 261, 302, 316, 362, 397
CviKI_1	RGCY	7 cut(s)	113, 188, 261, 302, 316, 362, 397
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	2 cut(s)	99, 262
DpnI	GATC	3 cut(s)	76, 168, 392
DpnII	GATC	3 cut(s)	74, 166, 390
Eco130I	CCWWGG	2 cut(s)	153, 210
Eco57I	CTGAAG	2 cut(s)	129, 375
Eco72I	CACGTG	1 cut(s)	80
EcoNI	CCTNNNNNAGG	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	10
EcoT14I	CCWWGG	2 cut(s)	153, 210
ErhI	CCWWGG	2 cut(s)	153, 210
FaeI	CATG	2 cut(s)	259, 391
FaiI	YATR	3 cut(s)	125, 257, 389
FatI	CATG	2 cut(s)	255, 387
FbaI	TGATCA	1 cut(s)	390
Fnu4HI	GCNGC	2 cut(s)	150, 360
FokI	GGATG	1 cut(s)	419
Fsp4HI	GCNGC	2 cut(s)	150, 360
FspBI	CTAG	3 cut(s)	170, 252, 398
GluI	GCNGC	2 cut(s)	150, 360
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	1 cut(s)	303
Hin1II	CATG	2 cut(s)	259, 391
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	3 cut(s)	29, 158, 306
HpaII	CCGG	1 cut(s)	303
Hpy188I	TCNGA	1 cut(s)	377
Hpy188III	TCNNGA	1 cut(s)	416
HpyAV	CCTTC	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	2 cut(s)	23, 320
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 146, 356
HpyF3I	CTNAG	2 cut(s)	99, 262
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	2 cut(s)	259, 391
KpnI	GGTACC	1 cut(s)	11
Ksp22I	TGATCA	1 cut(s)	390
Kzo9I	GATC	3 cut(s)	74, 166, 390
LpnPI	CCDG	5 cut(s)	24, 184, 316, 330, 379
Lsp1109I	GCAGC	2 cut(s)	136, 371
MabI	ACCWGGT	1 cut(s)	10
MaeI	CTAG	3 cut(s)	170, 252, 398
MaeII	ACGT	1 cut(s)	79
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	3 cut(s)	76, 168, 392
MboI	GATC	3 cut(s)	74, 166, 390
MboII	GAAGA	1 cut(s)	346
MfeI	CAATTG	1 cut(s)	93
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	3 cut(s)	93, 339, 378
MlyI	GAGTC	2 cut(s)	38, 315
MnlI	CCTC	2 cut(s)	11, 412
MseI	TTAA	2 cut(s)	272, 424
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	12
MunI	CAATTG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	3 cut(s)	104, 146, 356
NdeII	GATC	3 cut(s)	74, 166, 390
NlaIII	CATG	2 cut(s)	259, 391
NlaIV	GGNNCC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	2 cut(s)	151, 361
PleI	GAGTC	2 cut(s)	37, 314
PmaCI	CACGTG	1 cut(s)	80
PmlI	CACGTG	1 cut(s)	80
PpsI	GAGTC	2 cut(s)	37, 314
Ppu21I	YACGTR	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	10
PspCI	CACGTG	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	10
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	186
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	272, 424
SatI	GCNGC	2 cut(s)	150, 360
Sau3AI	GATC	3 cut(s)	74, 166, 390
Sau96I	GGNCC	1 cut(s)	186
SchI	GAGTC	2 cut(s)	38, 315
ScrFI	CCNGG	1 cut(s)	12
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	8 cut(s)	16, 22, 82, 115, 135, 270, 297, 364
SexAI	ACCWGGT	1 cut(s)	10
SfcI	CTRYAG	1 cut(s)	162
Sse9I	AATT	3 cut(s)	93, 339, 378
SsiI	CCGC	1 cut(s)	33
SspMI	CTAG	3 cut(s)	170, 252, 398
StyD4I	CCNGG	1 cut(s)	10
StyI	CCWWGG	2 cut(s)	153, 210
TaiI	ACGT	1 cut(s)	82
TasI	AATT	3 cut(s)	93, 339, 378
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	2 cut(s)	272, 424
Tru9I	TTAA	2 cut(s)	272, 424
TseI	GCWGC	2 cut(s)	149, 359
TspDTI	ATGAA	1 cut(s)	423
XagI	CCTNNNNNAGG	1 cut(s)	272
XspI	CTAG	3 cut(s)	170, 252, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.