pycom04g04600
TCP Family

assists the folding of proteins upon ATP hydrolysis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0010305
Physical Location & Seq
Reverse (-)
4209271 .. 4213175
3905 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1179 bp
ATGTCCTCAAAGTTGATAGGTGGTGACAGTGACTTCTTTGCAAATATGGTTGTAGATGCAGTACAAGCTGTAAAGATGACCAATGCTCGGGGGGAAGTCAAGTACCCAATCAAGGGGATTAATATTTTGAAAGCTCATGGAAAAAGTGCAAGAGATAGCTATCTCTTAACTGGTTATGCACTAAATACAGGCCGTGCTGCACAAGGAATGCCACTGAGAGTTTCCCCTGCGAAGATTGCCTGTCTTGACTTTAATCTTCAGAAGACCAAAATGCAAATGGGTGTCCAAGTTTTAGTTATCGATCCCAGGGAGCTTGAAAAGATTCGCCAAAGAGAAGCTGATATGACAAAAGAGCGTATTGAGAAACTTCTGAAAGTTGGAGCAAATGTTATTCTGACCACAAAAGGGATTGACGACATGGCACTCAAGTATTTTGTGGAGGCTGGGGCTATTGCAGTCAGACGTGTTCAGAAAGAAGATATGCGCCATGTTGCTAAGGCTACAGGTGCAACAATGGTTTCAACTTTCGCTGATATGGAAGGGGAGGAAACGTTTGATACGTCACTTCTTGGATCTGCAGATGAAGTTGTGGAGGAGCGCATTTCTGATGATGATGTGATTTTGATAAAAGGAACCAAAAATAACAGTGCAGTGTCGTTGATTCTCAGAGGTGCAAATGACTATATGCTTGATGAGATGGAAAGAGCTCTTCATGATGCTTTGTCTATTGTCAAGAGGACTCTAGAATCTAACACGGTAGTACCAGGTGGAGGTGCAGTTGAGTCTGCATTGTCTCTGTATTTGGAGGGTTTTGCTACAACATTAGGATCACGTGAGCAGTTGGCAATTGCCGAGTTTGCTGAATCTTTGTTGATTATACCAAAGGTTCTTGCTGTCAATGCTGCCAAGGATTCTACAGATTTAGTTTCAATACTACGGGCCAACCACCACAGGGCACAAACCAAGGCAACAAACAGGACTGACAAGAAGGATAAGGATTATTCTAGCATGGGCTTGGACCTATTAAAGGGAGAAGTTCGTAACAACCTAGAAGCCGGAGTCATTGAGCCTGCAATGAGTAAAGTGAAGATCATTCAGTTTGCAACTGAAGCAGCTATTACAATTCTCCGAATTGATGACATGATCAGGCTAGCCAAGGATGAAAGTCAAGAGGGTTAG

Protein Analysis

393

Amino Acids

42.76

Weight (kDa)

5.9

Isoelectric Point (pI)

32.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 1 - 383 1.2e-102 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 551
AclWI GGATC 3 cut(s) 296, 580, 835
AcuI CTGAAG 2 cut(s) 242, 1128
AcvI CACGTG 1 cut(s) 833
AfaI GTAC 3 cut(s) 63, 104, 762
AfiI CCNNNNNNNGG 7 cut(s) 87, 112, 113, 405, 770, 952, 1027
AflIII ACRYGT 1 cut(s) 463
AgsI TTSAA 4 cut(s) 130, 317, 522, 930
AjiI CACGTC 1 cut(s) 464
AjnI CCWGG 2 cut(s) 305, 763
AluBI AGCT 7 cut(s) 68, 134, 159, 313, 338, 707, 1115
AluI AGCT 7 cut(s) 68, 134, 159, 313, 338, 707, 1115
Alw21I GWGCWC 1 cut(s) 709
Alw26I GTCTC 1 cut(s) 798
AlwI GGATC 3 cut(s) 296, 580, 835
Ama87I CYCGRG 1 cut(s) 87
AoxI GGCC 2 cut(s) 190, 939
ApeKI GCWGC 3 cut(s) 197, 902, 1112
AseI ATTAAT 1 cut(s) 120
Asp700I GAANNNNTTC 1 cut(s) 321
AspLEI GCGC 2 cut(s) 486, 600
AspS9I GGNCC 2 cut(s) 939, 1018
AsuHPI GGTGA 1 cut(s) 35
AsuNHI GCTAGC 1 cut(s) 1150
AvaI CYCGRG 1 cut(s) 87
AvaII GGWCC 1 cut(s) 1018
BaeGI GKGCMC 1 cut(s) 958
BaeI ACNNNNGTAYC 2 cut(s) 744, 777
BanII GRGCYC 1 cut(s) 709
BbrPI CACGTG 1 cut(s) 833
BbsI GAAGAC 1 cut(s) 269
Bbv12I GWGCWC 1 cut(s) 709
BbvI GCAGC 3 cut(s) 184, 889, 1124
BccI CCATC 1 cut(s) 691
BceAI ACGGC 1 cut(s) 177
BciT130I CCWGG 2 cut(s) 307, 765
BclI TGATCA 1 cut(s) 1143
BcoDI GTCTC 1 cut(s) 798
BfaI CTAG 4 cut(s) 743, 1005, 1049, 1151
BfmI CTRYAG 3 cut(s) 501, 576, 915
BisI GCNGC 3 cut(s) 198, 903, 1113
BlsI GCNGC 3 cut(s) 199, 904, 1114
Bme1390I CCNGG 2 cut(s) 307, 765
Bme18I GGWCC 1 cut(s) 1018
BmeT110I CYCGRG 1 cut(s) 87
BmgBI CACGTC 1 cut(s) 464
BmgT120I GGNCC 2 cut(s) 939, 1018
BmiI GGNNCC 1 cut(s) 634
BmrFI CCNGG 2 cut(s) 307, 765
BmsI GCATC 2 cut(s) 46, 706
BmtI GCTAGC 1 cut(s) 1154
BpiI GAAGAC 1 cut(s) 269
Bpu10I CCTNAGC 1 cut(s) 495
BpuEI CTTGAG 1 cut(s) 410
Bsa29I ATCGAT 1 cut(s) 300
BsaAI YACGTR 1 cut(s) 833
BsaBI GATNNNNATC 1 cut(s) 159
BsaJI CCNNGG 5 cut(s) 305, 306, 906, 963, 1155
BsaXI ACNNNNNCTCC 6 cut(s) 372, 402, 536, 566, 762, 792
Bsc4I CCNNNNNNNGG 7 cut(s) 87, 112, 113, 405, 770, 952, 1027
Bse1I ACTGG 1 cut(s) 175
Bse3DI GCAATG 1 cut(s) 1080
Bse8I GATNNNNATC 1 cut(s) 159
BseBI CCWGG 2 cut(s) 307, 765
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 5 cut(s) 305, 306, 906, 963, 1155
BseGI GGATG 1 cut(s) 1165
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 7 cut(s) 87, 112, 113, 405, 770, 952, 1027
BseMI GCAATG 1 cut(s) 1080
BseMII CTCAG 2 cut(s) 206, 679
BseNI ACTGG 1 cut(s) 175
BseRI GAGGAG 1 cut(s) 608
BseSI GKGCMC 1 cut(s) 958
BseXI GCAGC 3 cut(s) 184, 889, 1124
BseYI CCCAGC 1 cut(s) 443
BsgI GTGCAG 3 cut(s) 183, 669, 795
BshFI GGCC 2 cut(s) 192, 941
BshVI ATCGAT 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 709
BsiHKCI CYCGRG 1 cut(s) 87
BsiSI CCGG 1 cut(s) 1056
BslI CCNNNNNNNGG 7 cut(s) 87, 112, 113, 405, 770, 952, 1027
BsmAI GTCTC 1 cut(s) 798
BsmI GAATGC 1 cut(s) 213
BsnI GGCC 2 cut(s) 192, 941
BsoBI CYCGRG 1 cut(s) 87
Bsp1286I GDGCHC 2 cut(s) 709, 958
Bsp143I GATC 5 cut(s) 301, 572, 827, 1089, 1143
BspANI GGCC 2 cut(s) 192, 941
BspCNI CTCAG 2 cut(s) 207, 678
BspDI ATCGAT 1 cut(s) 300
BspHI TCATGA 1 cut(s) 712
BspLI GGNNCC 1 cut(s) 634
BspMAI CTGCAG 1 cut(s) 580
BspOI GCTAGC 1 cut(s) 1154
BspPI GGATC 3 cut(s) 296, 580, 835
BspQI GCTCTTC 1 cut(s) 714
BsrDI GCAATG 1 cut(s) 1080
BsrI ACTGG 1 cut(s) 175
BssECI CCNNGG 5 cut(s) 305, 306, 906, 963, 1155
BssMI GATC 5 cut(s) 301, 572, 827, 1089, 1143
BssT1I CCWWGG 3 cut(s) 906, 963, 1155
Bst2UI CCWGG 2 cut(s) 307, 765
Bst4CI ACNGT 3 cut(s) 29, 647, 757
Bst6I CTCTTC 1 cut(s) 714
BstBAI YACGTR 1 cut(s) 833
BstC8I GCNNGC 2 cut(s) 1071, 1152
BstDEI CTNAG 3 cut(s) 215, 495, 665
BstENI CCTNNNNNAGG 1 cut(s) 1025
BstF5I GGATG 1 cut(s) 1165
BstHHI GCGC 2 cut(s) 486, 600
BstKTI GATC 5 cut(s) 304, 575, 830, 1092, 1146
BstMAI GTCTC 1 cut(s) 798
BstMBI GATC 5 cut(s) 301, 572, 827, 1089, 1143
BstMWI GCNNNNNNNGC 6 cut(s) 65, 236, 506, 857, 899, 1109
BstNI CCWGG 2 cut(s) 307, 765
BstSCI CCNGG 2 cut(s) 305, 763
BstSFI CTRYAG 3 cut(s) 501, 576, 915
BstSLI GKGCMC 1 cut(s) 958
BstV1I GCAGC 3 cut(s) 184, 889, 1124
BstV2I GAAGAC 1 cut(s) 269
BstX2I RGATCY 1 cut(s) 572
BstYI RGATCY 1 cut(s) 572
Bsu15I ATCGAT 1 cut(s) 300
BsuRI GGCC 2 cut(s) 192, 941
BsuTUI ATCGAT 1 cut(s) 300
BtrI CACGTC 1 cut(s) 464
BtsCI GGATG 1 cut(s) 1165
BtsI GCAGTG 1 cut(s) 657
BtsIMutI CAGTG 4 cut(s) 34, 212, 652, 657
Cac8I GCNNGC 2 cut(s) 1071, 1152
CciI TCATGA 1 cut(s) 712
CfoI GCGC 2 cut(s) 486, 600
Cfr13I GGNCC 2 cut(s) 939, 1018
ClaI ATCGAT 1 cut(s) 300
CsiI ACCWGGT 1 cut(s) 763
Csp6I GTAC 3 cut(s) 62, 103, 761
CviAII CATG 6 cut(s) 137, 418, 488, 713, 1009, 1141
CviQI GTAC 3 cut(s) 62, 103, 761
DdeI CTNAG 3 cut(s) 215, 495, 665
DpnI GATC 5 cut(s) 303, 574, 829, 1091, 1145
DpnII GATC 5 cut(s) 301, 572, 827, 1089, 1143
Eam1104I CTCTTC 1 cut(s) 714
EarI CTCTTC 1 cut(s) 714
Ecl136II GAGCTC 1 cut(s) 707
Eco130I CCWWGG 3 cut(s) 906, 963, 1155
Eco24I GRGCYC 1 cut(s) 709
Eco47I GGWCC 1 cut(s) 1018
Eco53kI GAGCTC 1 cut(s) 707
Eco57I CTGAAG 2 cut(s) 242, 1128
Eco72I CACGTG 1 cut(s) 833
Eco88I CYCGRG 1 cut(s) 87
EcoICRI GAGCTC 1 cut(s) 707
EcoNI CCTNNNNNAGG 1 cut(s) 1025
EcoRII CCWGG 2 cut(s) 305, 763
EcoT14I CCWWGG 3 cut(s) 906, 963, 1155
EcoT38I GRGCYC 1 cut(s) 709
ErhI CCWWGG 3 cut(s) 906, 963, 1155
FaeI CATG 6 cut(s) 140, 421, 491, 716, 1012, 1144
FatI CATG 6 cut(s) 136, 417, 487, 712, 1008, 1140
FbaI TGATCA 1 cut(s) 1143
Fnu4HI GCNGC 3 cut(s) 198, 903, 1113
FokI GGATG 1 cut(s) 1172
FriOI GRGCYC 1 cut(s) 709
Fsp4HI GCNGC 3 cut(s) 198, 903, 1113
FspBI CTAG 4 cut(s) 743, 1005, 1049, 1151
GlaI GCGC 2 cut(s) 485, 599
GluI GCNGC 3 cut(s) 198, 903, 1113
GsaI CCCAGC 1 cut(s) 447
HaeIII GGCC 2 cut(s) 192, 941
HapII CCGG 1 cut(s) 1056
HhaI GCGC 2 cut(s) 486, 600
Hin1II CATG 6 cut(s) 140, 421, 491, 716, 1012, 1144
Hin6I GCGC 2 cut(s) 484, 598
HinP1I GCGC 2 cut(s) 484, 598
HinfI GANTC 8 cut(s) 322, 661, 739, 746, 782, 863, 911, 1059
HpaII CCGG 1 cut(s) 1056
HphI GGTGA 1 cut(s) 35
Hpy188I TCNGA 8 cut(s) 261, 372, 396, 461, 471, 607, 668, 1130
Hpy188III TCNNGA 5 cut(s) 245, 713, 733, 743, 1169
HpyAV CCTTC 2 cut(s) 533, 982
HpyCH4III ACNGT 3 cut(s) 29, 647, 757
HpyCH4IV ACGT 4 cut(s) 463, 551, 560, 832
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 236, 506, 857, 899, 1109
HpyF3I CTNAG 3 cut(s) 215, 495, 665
HpySE526I ACGT 4 cut(s) 463, 551, 560, 832
Hsp92II CATG 6 cut(s) 140, 421, 491, 716, 1012, 1144
HspAI GCGC 2 cut(s) 484, 598
Ksp22I TGATCA 1 cut(s) 1143
Kzo9I GATC 5 cut(s) 301, 572, 827, 1089, 1143
LguI GCTCTTC 1 cut(s) 714
LmnI GCTCC 3 cut(s) 310, 380, 595
Lsp1109I GCAGC 3 cut(s) 184, 889, 1124
LweI GCATC 2 cut(s) 46, 706
MabI ACCWGGT 1 cut(s) 763
MaeI CTAG 4 cut(s) 743, 1005, 1049, 1151
MaeII ACGT 4 cut(s) 463, 551, 560, 832
MaeIII GTNAC 4 cut(s) 23, 29, 561, 1040
MalI GATC 5 cut(s) 303, 574, 829, 1091, 1145
MboI GATC 5 cut(s) 301, 572, 827, 1089, 1143
MboII GAAGA 6 cut(s) 244, 248, 274, 488, 701, 1099
MfeI CAATTG 1 cut(s) 846
MflI RGATCY 1 cut(s) 572
MhlI GDGCHC 2 cut(s) 709, 958
MluCI AATT 3 cut(s) 846, 1122, 1131
MlyI GAGTC 3 cut(s) 733, 791, 1068
MmeI TCCRAC 1 cut(s) 358
MnlI CCTC 9 cut(s) 16, 433, 538, 586, 662, 729, 764, 799, 1165
MroXI GAANNNNTTC 1 cut(s) 321
MseI TTAA 4 cut(s) 120, 167, 252, 1025
MspI CCGG 1 cut(s) 1056
MspR9I CCNGG 2 cut(s) 307, 765
MunI CAATTG 1 cut(s) 846
Mva1269I GAATGC 1 cut(s) 213
MvaI CCWGG 2 cut(s) 307, 765
MwoI GCNNNNNNNGC 6 cut(s) 65, 236, 506, 857, 899, 1109
NdeII GATC 5 cut(s) 301, 572, 827, 1089, 1143
NheI GCTAGC 1 cut(s) 1150
NlaIII CATG 6 cut(s) 140, 421, 491, 716, 1012, 1144
NlaIV GGNNCC 1 cut(s) 634
NmeAIII GCCGAG 1 cut(s) 877
NmuCI GTSAC 3 cut(s) 23, 29, 561
PagI TCATGA 1 cut(s) 712
PasI CCCWGGG 1 cut(s) 306
PciSI GCTCTTC 1 cut(s) 714
PcsI WCGNNNNNNNCGW 1 cut(s) 557
PctI GAATGC 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 5 cut(s) 322, 661, 746, 863, 911
PkrI GCNGC 3 cut(s) 199, 904, 1114
PleI GAGTC 3 cut(s) 733, 790, 1067
PmaCI CACGTG 1 cut(s) 833
PmlI CACGTG 1 cut(s) 833
PpsI GAGTC 3 cut(s) 733, 790, 1067
Ppu21I YACGTR 1 cut(s) 833
PshBI ATTAAT 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 709
Psp1406I AACGTT 1 cut(s) 551
Psp6I CCWGG 2 cut(s) 305, 763
PspCI CACGTG 1 cut(s) 833
PspFI CCCAGC 1 cut(s) 443
PspGI CCWGG 2 cut(s) 305, 763
PspN4I GGNNCC 1 cut(s) 634
PspPI GGNCC 2 cut(s) 939, 1018
PstI CTGCAG 1 cut(s) 580
PsuI RGATCY 1 cut(s) 572
RsaI GTAC 3 cut(s) 63, 104, 762
RsaNI GTAC 3 cut(s) 62, 103, 761
SacI GAGCTC 1 cut(s) 709
SapI GCTCTTC 1 cut(s) 714
SaqAI TTAA 4 cut(s) 120, 167, 252, 1025
SatI GCNGC 3 cut(s) 198, 903, 1113
Sau3AI GATC 5 cut(s) 301, 572, 827, 1089, 1143
Sau96I GGNCC 2 cut(s) 939, 1018
SchI GAGTC 3 cut(s) 733, 791, 1068
ScrFI CCNGG 2 cut(s) 307, 765
SduI GDGCHC 2 cut(s) 709, 958
SexAI ACCWGGT 1 cut(s) 763
SfaNI GCATC 2 cut(s) 46, 706
SfcI CTRYAG 3 cut(s) 501, 576, 915
SinI GGWCC 1 cut(s) 1018
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
Sse9I AATT 3 cut(s) 846, 1122, 1131
SspI AATATT 1 cut(s) 124
SspMI CTAG 4 cut(s) 743, 1005, 1049, 1151
SstI GAGCTC 1 cut(s) 709
StyD4I CCNGG 2 cut(s) 305, 763
StyI CCWWGG 3 cut(s) 906, 963, 1155
TaaI ACNGT 3 cut(s) 29, 647, 757
TaiI ACGT 4 cut(s) 466, 554, 563, 835
TaqI TCGA 1 cut(s) 300
TasI AATT 3 cut(s) 846, 1122, 1131
TatI WGTACW 1 cut(s) 61
TfiI GAWTC 5 cut(s) 322, 661, 746, 863, 911
Tru1I TTAA 4 cut(s) 120, 167, 252, 1025
Tru9I TTAA 4 cut(s) 120, 167, 252, 1025
TscAI CASTG 4 cut(s) 34, 219, 652, 657
TseFI GTSAC 3 cut(s) 23, 29, 561
TseI GCWGC 3 cut(s) 197, 902, 1112
Tsp45I GTSAC 3 cut(s) 23, 29, 561
TspDTI ATGAA 3 cut(s) 597, 701, 1176
TspRI CASTG 4 cut(s) 34, 219, 652, 657
VpaK11BI GGWCC 1 cut(s) 1018
VspI ATTAAT 1 cut(s) 120
XagI CCTNNNNNAGG 1 cut(s) 1025
XbaI TCTAGA 1 cut(s) 742
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 4 cut(s) 743, 1005, 1049, 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.