Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003378

Physical Location & Seq

Genomic Coordinates Reverse (-)

5203917 .. 5208360

Gene Structure 4444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g05410.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1995 bp

ATGGAGGGGGTGGATCATTTGGCGCAAGAGCGGAGCAAGGCGCAGTTCGATGTCGACCAGATGAAAGTCATCTGGGCCGGCTCTCGCCACACCTTGGAAGTGTCCGATCGAATTGCTCGCCTCGTCGCTAGCGATCCGGTCTTTAGAAAGGATAACAGAACATTGCTGAGTAGGAAGGATTTGTTTAAAAATACTCTGCAAAAAGCGGCTCATGCTTGGAAACGGATCACAGAGCTGCGGCTATCCGAGGAAGAGGCGTACTGGTTAAGGCATTATGTGGATCAACCAGCGTATACGGATCTTCATTGGGGAATGTTCGTGCCTGCTATTAAAGGATCAGGTACTGAGGAGCAGCAAAAGAAGTGGTTGCCGCTGGCATACAAAATGCAAATCATTGGTTGCTATGCTCAGACTGAACTTGGTCATGGCTCCAATGTTCAAGGGCTGGAGACCACTGCAACTTTCGATCCAAAGACTGACGAGTTTGTTATTAATAGTCCTACTCTCACATCAAGCAAATGGTGGCCTGGTGGTTTAGGAAAGGCTGCTACACATGCTGTTGTTTATGCCCGTCTTATTACTGATGGTCAAGACCATGGAGTGCATGGTTTCATTGTCCAACTTCGGAGCTTGGATGATCACTTACCACTTCCAGGCATAATAGTTGGCGATATTGGGATGAAATTTGGAAGTGGGGCATACAACTCCATGGACAATGGTGTTCTTAGACTTGATCATGTCCGTATACCAAGGGAACAAATGTTGATGAGGGTCTCACAGGTCACAAGAGAAGGAAAATACGTACAATCCAATGTTCCACGACAGCTGCTGTACGGAACTATGGTTTATGTGCGGCAAACGATTGTAGCTGATGCTTCCTCTGCTTTATCACGGGCAGTATGTATTGCTACTAGGTATAGTGTCGTTCGTCGACAATTTGGTTCACAAGATGGTGGCCTTGAAACACAGGTCATTGATTACAAGACTCAGCAAAGTAGGCTCTTCCCTTTGCTGGCTTCTGCCTATGCTTTTAGATTTGTTGGTGAGTGGTTGAAATGGCTATACACGGATGTGACAGAGAAGTTGCAAGCTAATGATTTCTTGACATTGCCTGAGGCTCATGCATGCACTGCGGGTCTGAAATCATTGACCACTTCTGCAACTGCTGATGGCATTGAAGAATGCAGGAAATTATGTGGTGGCCATGGTTATCTATCTAACAGTGGGCTTCCTGAATTATTTGCCGTTTATGTACCAGCATGTACATATGAAGGAGACAACATTGTTCTACTTCTACAGGTTGCAAGGTTTCTTATGAAGACTGTTGCTCAGCTACCATCTGGAAAAAAGCCTGTTGGAACCACAACTTATATGGGCCGTGCTCAACATTTGATCCAATGTCGTTGTAGTGCTCAAAAAGCTGAGGATTGGTTGAACCCTAGTGTGATACTTGAGGTATTTGAAGCAAGGGCTATTAGGATGTCGATTGCCTGCGCTCAAGACCTTAGCAAGTTTTCAAATCAAGAAGAAGGCTTTGCAGAACTCTCATCTAATTTAGCTGAGGCAGCAGTAGCTCATTGCCAATTAATTGTTGTTTCCAAGTTCATCGATAAAGTCCAACAAGACATACCGGGAAAGGGGGTGAAAAAACAGCTGGAGATCCTCTGCAACATCTATGCTTTATACACTATTCACAAGCATTTGGGTGATTTCCTCTCCACTGGAAGCATCACAGCAAAGCAAGCTTCACTTGCAAATGATCAACTTAGATCTCTTTATTCCCAGCTCCGTCCCAATGCCATTGCCCTCGTTGATGCATTTAATTTCACCGACCACTACCTCGGCTCAGTTCTAGGCCGCTATGATGGTAATGTGTACCCGAGTCTCTATGCGGAGGCTTGGAAAGATCCTCTTAACGAGTCAGTTGTGCCCGATGGCTATCGGGAATATGTCCAGCCCCTGCTGAAGAACCAGCTCCGTAACGCAAGACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001676 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009694 GO:0009695 GO:0009987 GO:0010035 GO:0010038 GO:0010817 GO:0016042 GO:0016053 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030054 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0042221 GO:0042445 GO:0042446 GO:0042579 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0046686 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0072330 GO:0097159 GO:1901265 GO:1901363 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_M Acyl-CoA_ox_N

Protein Analysis

665

Amino Acids

74.18

Weight (kDa)

8.14

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35690 AT4G16760 AT4G16760
fragaria_vesca	FvH4_5g19470
malus_domestica	MD04G1060500.v1.1 MD13G1127300.v1.1
prunus_persica	Prupe.5G065100_v2.0.a1 Prupe.7G067100_v2.0.a1
pyrus_communis	pycom04g05410 pycom13g11040
rosa_chinensis	RchiOBHm_Chr3g0481201 RchiOBHm_Chr3g0481221 RchiOBHm_Chr7g0204041
rosa_laevigata	RLG00000003492 RLG00000023411 RLG00000023414 RLG00000023415
rosa_multiflora	Rmu_sc0000064.1_g000003 Rmu_sc0001311.1_g000009 Rmu_sc0001551.1_g000009 Rmu_sc0001843.1_g000010 Rmu_sc0009910.1_g000005
rosa_roxburghii	Rroxscaffold_3G00253400 Rroxscaffold_6G00400590
rosa_rugosa	Rorug03G0190400 Rorug07G0080100 Rorug07G0080200
rosa_samantha	Rh3AG241300 Rh3BG276600 Rh3DG268000 Rh7AG210200 Rh7BG208600
rosa_wichuraiana	Rw3G021520 Rw3G021530 Rw3G021550 Rw7G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccBSI	CCGCTC	1 cut(s)	31
AccI	GTMKAC	4 cut(s)	54, 293, 745, 931
AciI	CCGC	8 cut(s)	31, 206, 238, 371, 853, 1133, 1858, 1892
AcoI	YGGCCR	1 cut(s)	1201
AcsI	RAATTY	1 cut(s)	683
AcuI	CTGAAG	1 cut(s)	1985
AfaI	GTAC	7 cut(s)	260, 343, 804, 833, 1254, 1264, 1877
AfiI	CCNNNNNNNGG	4 cut(s)	94, 653, 1012, 1637
AgsI	TTSAA	7 cut(s)	440, 962, 1054, 1178, 1435, 1463, 1518
AjnI	CCWGG	2 cut(s)	526, 652
AleI	CACNNNNGTG	1 cut(s)	1070
Alw21I	GWGCWC	2 cut(s)	1384, 1414
Alw26I	GTCTC	4 cut(s)	443, 778, 1269, 1889
AlwNI	CAGNNNCTG	3 cut(s)	344, 829, 1960
Ama87I	CYCGRG	1 cut(s)	1879
AoxI	GGCC	6 cut(s)	75, 524, 955, 1201, 1375, 1855
ApeKI	GCWGC	5 cut(s)	235, 352, 545, 826, 1565
ApoI	RAATTY	1 cut(s)	683
AseI	ATTAAT	2 cut(s)	492, 1586
AspLEI	GCGC	3 cut(s)	25, 43, 1496
AspS9I	GGNCC	2 cut(s)	75, 1375
AsuC2I	CCSGG	1 cut(s)	1632
AsuHPI	GGTGA	4 cut(s)	1055, 1654, 1718, 1819
AsuNHI	GCTAGC	1 cut(s)	128
AvaI	CYCGRG	1 cut(s)	1879
AxyI	CCTNAGG	1 cut(s)	1113
BaeGI	GKGCMC	1 cut(s)	1932
BalI	TGGCCA	1 cut(s)	1203
BbsI	GAAGAC	1 cut(s)	1325
Bbv12I	GWGCWC	2 cut(s)	1384, 1414
BbvCI	CCTCAGC	2 cut(s)	1422, 1560
BbvI	GCAGC	5 cut(s)	222, 364, 532, 813, 1577
BccI	CCATC	6 cut(s)	578, 944, 1163, 1345, 1859, 1928
BceAI	ACGGC	2 cut(s)	1229, 1362
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BciT130I	CCWGG	2 cut(s)	528, 654
BclI	TGATCA	3 cut(s)	637, 733, 1759
BcnI	CCSGG	1 cut(s)	1632
BcoDI	GTCTC	4 cut(s)	443, 778, 1269, 1889
BfaI	CTAG	4 cut(s)	129, 912, 1440, 1853
BfmI	CTRYAG	1 cut(s)	1295
BglII	AGATCT	1 cut(s)	1769
BlpI	GCTNAGC	1 cut(s)	1329
Bme1390I	CCNGG	3 cut(s)	528, 654, 1632
BmeT110I	CYCGRG	1 cut(s)	1879
BmgT120I	GGNCC	2 cut(s)	75, 1375
BmiI	GGNNCC	2 cut(s)	430, 1360
BmrFI	CCNGG	3 cut(s)	528, 654, 1632
BmsI	GCATC	3 cut(s)	862, 1737, 1804
BmtI	GCTAGC	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	1325
BpmI	CTGGAG	2 cut(s)	467, 1676
Bpu10I	CCTNAGC	3 cut(s)	1422, 1505, 1560
Bpu1102I	GCTNAGC	1 cut(s)	1329
BpuEI	CTTGAG	2 cut(s)	1472, 1482
BpuMI	CCSGG	1 cut(s)	1632
Bsa29I	ATCGAT	1 cut(s)	1608
BsaAI	YACGTR	1 cut(s)	802
BsaBI	GATNNNNATC	1 cut(s)	1938
BsaI	GGTCTC	2 cut(s)	443, 778
BsaJI	CCNNGG	7 cut(s)	93, 246, 595, 708, 749, 1204, 1840
BsaWI	WCCGGW	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 653, 1012, 1637
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	2 cut(s)	266, 1726
Bse21I	CCTNAGG	1 cut(s)	1113
Bse3DI	GCAATG	4 cut(s)	161, 1106, 1576, 1800
Bse8I	GATNNNNATC	1 cut(s)	1938
BseBI	CCWGG	2 cut(s)	528, 654
BseCI	ATCGAT	1 cut(s)	1608
BseDI	CCNNGG	7 cut(s)	93, 246, 595, 708, 749, 1204, 1840
BseGI	GGATG	4 cut(s)	640, 684, 1075, 1485
BseJI	GATNNNNATC	1 cut(s)	1938
BseLI	CCNNNNNNNGG	4 cut(s)	94, 653, 1012, 1637
BseMI	GCAATG	4 cut(s)	161, 1106, 1576, 1800
BseMII	CTCAG	9 cut(s)	158, 336, 422, 1001, 1104, 1343, 1413, 1551, 1860
BseNI	ACTGG	2 cut(s)	266, 1726
BseRI	GAGGAG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	1932
BseXI	GCAGC	5 cut(s)	222, 364, 532, 813, 1577
BseYI	CCCAGC	1 cut(s)	1782
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	6 cut(s)	77, 526, 957, 1203, 1377, 1857
BshVI	ATCGAT	1 cut(s)	1608
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	2 cut(s)	1384, 1414
BsiHKCI	CYCGRG	1 cut(s)	1879
BsiSI	CCGG	3 cut(s)	78, 137, 1631
BslFI	GGGAC	1 cut(s)	1776
BslI	CCNNNNNNNGG	4 cut(s)	94, 653, 1012, 1637
BsmAI	GTCTC	4 cut(s)	443, 778, 1269, 1889
BsmFI	GGGAC	1 cut(s)	1776
BsmI	GAATGC	1 cut(s)	1187
BsnI	GGCC	6 cut(s)	77, 526, 957, 1203, 1377, 1857
Bso31I	GGTCTC	2 cut(s)	443, 778
BsoBI	CYCGRG	1 cut(s)	1879
Bsp1286I	GDGCHC	3 cut(s)	1384, 1414, 1932
Bsp1407I	TGTACA	1 cut(s)	1262
Bsp1720I	GCTNAGC	1 cut(s)	1329
Bsp19I	CCATGG	3 cut(s)	595, 708, 1204
BspACI	CCGC	8 cut(s)	31, 206, 238, 371, 853, 1133, 1858, 1892
BspANI	GGCC	6 cut(s)	77, 526, 957, 1203, 1377, 1857
BspCNI	CTCAG	9 cut(s)	159, 337, 421, 1000, 1105, 1342, 1414, 1552, 1859
BspDI	ATCGAT	1 cut(s)	1608
BspLI	GGNNCC	2 cut(s)	430, 1360
BspOI	GCTAGC	1 cut(s)	132
BspQI	GCTCTTC	1 cut(s)	1007
BspTNI	GGTCTC	2 cut(s)	443, 778
BsrBI	CCGCTC	1 cut(s)	31
BsrDI	GCAATG	4 cut(s)	161, 1106, 1576, 1800
BsrFI	RCCGGY	1 cut(s)	77
BsrGI	TGTACA	1 cut(s)	1262
BsrI	ACTGG	2 cut(s)	266, 1726
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	7 cut(s)	93, 246, 595, 708, 749, 1204, 1840
BssNAI	GTATAC	2 cut(s)	294, 746
BssT1I	CCWWGG	5 cut(s)	93, 595, 708, 749, 1204
Bst1107I	GTATAC	2 cut(s)	294, 746
Bst2UI	CCWGG	2 cut(s)	528, 654
Bst4CI	ACNGT	2 cut(s)	1223, 1324
Bst6I	CTCTTC	2 cut(s)	246, 1007
BstAPI	GCANNNNNTGC	1 cut(s)	1130
BstAUI	TGTACA	1 cut(s)	1262
BstBAI	YACGTR	1 cut(s)	802
BstDSI	CCRYGG	3 cut(s)	595, 708, 1204
BstF5I	GGATG	4 cut(s)	640, 684, 1075, 1485
BstHHI	GCGC	3 cut(s)	25, 43, 1496
BstMAI	GTCTC	4 cut(s)	443, 778, 1269, 1889
BstMCI	CGRYCG	1 cut(s)	109
BstNI	CCWGG	2 cut(s)	528, 654
BstNSI	RCATGY	3 cut(s)	557, 1128, 1263
BstSCI	CCNGG	3 cut(s)	526, 652, 1630
BstSFI	CTRYAG	1 cut(s)	1295
BstSLI	GKGCMC	1 cut(s)	1932
BstSNI	TACGTA	1 cut(s)	802
BstV1I	GCAGC	5 cut(s)	222, 364, 532, 813, 1577
BstV2I	GAAGAC	1 cut(s)	1325
BstX2I	RGATCY	4 cut(s)	298, 1659, 1769, 1906
BstYI	RGATCY	4 cut(s)	298, 1659, 1769, 1906
BstZ17I	GTATAC	2 cut(s)	294, 746
Bsu15I	ATCGAT	1 cut(s)	1608
Bsu36I	CCTNAGG	1 cut(s)	1113
BsuRI	GGCC	6 cut(s)	77, 526, 957, 1203, 1377, 1857
BsuTUI	ATCGAT	1 cut(s)	1608
BtgI	CCRYGG	3 cut(s)	595, 708, 1204
BtsCI	GGATG	4 cut(s)	640, 684, 1075, 1485
BtsI	GCAGTG	2 cut(s)	453, 1128
BtsIMutI	CAGTG	4 cut(s)	453, 1128, 1228, 1719
CaiI	CAGNNNCTG	3 cut(s)	344, 829, 1960
CfoI	GCGC	3 cut(s)	25, 43, 1496
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	2 cut(s)	75, 1375
ClaI	ATCGAT	1 cut(s)	1608
Csp6I	GTAC	7 cut(s)	259, 342, 803, 832, 1253, 1263, 1876
CspCI	CAANNNNNGTGG	2 cut(s)	344, 379
CviQI	GTAC	7 cut(s)	259, 342, 803, 832, 1253, 1263, 1876
DraI	TTTAAA	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	1201
Eam1104I	CTCTTC	2 cut(s)	246, 1007
EarI	CTCTTC	2 cut(s)	246, 1007
Eco105I	TACGTA	1 cut(s)	802
Eco130I	CCWWGG	5 cut(s)	93, 595, 708, 749, 1204
Eco31I	GGTCTC	2 cut(s)	443, 778
Eco57I	CTGAAG	1 cut(s)	1985
Eco81I	CCTNAGG	1 cut(s)	1113
Eco88I	CYCGRG	1 cut(s)	1879
EcoRII	CCWGG	2 cut(s)	526, 652
EcoT14I	CCWWGG	5 cut(s)	93, 595, 708, 749, 1204
EcoT22I	ATGCAT	2 cut(s)	1126, 1819
ErhI	CCWWGG	5 cut(s)	93, 595, 708, 749, 1204
FalI	AAGNNNNNCTT	4 cut(s)	1734, 1766, 1896, 1928
FaqI	GGGAC	1 cut(s)	1776
FauI	CCCGC	1 cut(s)	1126
FauNDI	CATATG	1 cut(s)	1267
FbaI	TGATCA	3 cut(s)	637, 733, 1759
FblI	GTMKAC	4 cut(s)	54, 293, 745, 931
FokI	GGATG	4 cut(s)	647, 691, 1082, 1492
FspBI	CTAG	4 cut(s)	129, 912, 1440, 1853
GlaI	GCGC	3 cut(s)	24, 42, 1495
GsaI	CCCAGC	1 cut(s)	1786
GsuI	CTGGAG	2 cut(s)	467, 1676
HaeIII	GGCC	6 cut(s)	77, 526, 957, 1203, 1377, 1857
HapII	CCGG	3 cut(s)	78, 137, 1631
HhaI	GCGC	3 cut(s)	25, 43, 1496
Hin6I	GCGC	3 cut(s)	23, 41, 1494
HinP1I	GCGC	3 cut(s)	23, 41, 1494
HincII	GTYRAC	2 cut(s)	55, 932
HindII	GTYRAC	2 cut(s)	55, 932
HindIII	AAGCTT	1 cut(s)	1743
HinfI	GANTC	3 cut(s)	985, 1882, 1919
HpaII	CCGG	3 cut(s)	78, 137, 1631
HphI	GGTGA	4 cut(s)	1055, 1654, 1718, 1819
Hpy166II	GTNNAC	6 cut(s)	55, 294, 746, 932, 944, 1876
Hpy188I	TCNGA	5 cut(s)	106, 247, 411, 627, 1140
Hpy188III	TCNNGA	7 cut(s)	590, 1102, 1232, 1341, 1499, 1523, 1943
Hpy8I	GTNNAC	6 cut(s)	55, 294, 746, 932, 944, 1876
Hpy99I	CGWCG	2 cut(s)	128, 933
HpyAV	CCTTC	4 cut(s)	169, 785, 1265, 1523
HpyCH4III	ACNGT	2 cut(s)	1223, 1324
HpyCH4IV	ACGT	1 cut(s)	801
HpySE526I	ACGT	1 cut(s)	801
HspAI	GCGC	3 cut(s)	23, 41, 1494
KroI	GCCGGC	1 cut(s)	77
KroNI	GCCGGC	1 cut(s)	79
Ksp22I	TGATCA	3 cut(s)	637, 733, 1759
LguI	GCTCTTC	1 cut(s)	1007
LmnI	GCTCC	6 cut(s)	33, 349, 434, 627, 1791, 1980
Lsp1109I	GCAGC	5 cut(s)	222, 364, 532, 813, 1577
LweI	GCATC	3 cut(s)	862, 1737, 1804
MaeI	CTAG	4 cut(s)	129, 912, 1440, 1853
MaeII	ACGT	1 cut(s)	801
MaeIII	GTNAC	3 cut(s)	781, 1072, 1979
MbiI	CCGCTC	1 cut(s)	31
MboII	GAAGA	7 cut(s)	263, 293, 994, 1190, 1330, 1538, 1978
MflI	RGATCY	4 cut(s)	298, 1659, 1769, 1906
MhlI	GDGCHC	3 cut(s)	1384, 1414, 1932
MlsI	TGGCCA	1 cut(s)	1203
MluCI	AATT	9 cut(s)	111, 683, 935, 1190, 1235, 1552, 1583, 1587, 1822
MluNI	TGGCCA	1 cut(s)	1203
MlyI	GAGTC	3 cut(s)	979, 1891, 1928
MmeI	TCCRAC	3 cut(s)	643, 1336, 1642
Mox20I	TGGCCA	1 cut(s)	1203
Mph1103I	ATGCAT	2 cut(s)	1126, 1819
MroNI	GCCGGC	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	1203
MseI	TTAA	7 cut(s)	186, 266, 330, 492, 1586, 1821, 1914
MslI	CAYNNNNRTG	2 cut(s)	1070, 1704
Msp20I	TGGCCA	1 cut(s)	1203
MspA1I	CMGCKG	3 cut(s)	373, 826, 1654
MspI	CCGG	3 cut(s)	78, 137, 1631
MspR9I	CCNGG	3 cut(s)	528, 654, 1632
Mva1269I	GAATGC	1 cut(s)	1187
MvaI	CCWGG	2 cut(s)	528, 654
NaeI	GCCGGC	1 cut(s)	79
NciI	CCSGG	1 cut(s)	1632
NcoI	CCATGG	3 cut(s)	595, 708, 1204
NdeI	CATATG	1 cut(s)	1267
NgoMIV	GCCGGC	1 cut(s)	77
NheI	GCTAGC	1 cut(s)	128
NlaIV	GGNNCC	2 cut(s)	430, 1360
NmeAIII	GCCGAG	1 cut(s)	1821
NmuCI	GTSAC	2 cut(s)	781, 1072
NsiI	ATGCAT	2 cut(s)	1126, 1819
NspI	RCATGY	3 cut(s)	557, 1128, 1263
OliI	CACNNNNGTG	1 cut(s)	1070
PaeI	GCATGC	1 cut(s)	1128
PciSI	GCTCTTC	1 cut(s)	1007
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	1 cut(s)	1187
PdiI	GCCGGC	1 cut(s)	79
PflMI	CCANNNNNTGG	1 cut(s)	94
Ple19I	CGATCG	1 cut(s)	109
PleI	GAGTC	3 cut(s)	979, 1890, 1927
PpsI	GAGTC	3 cut(s)	979, 1890, 1927
Ppu21I	YACGTR	1 cut(s)	802
PshBI	ATTAAT	2 cut(s)	492, 1586
Psp6I	CCWGG	2 cut(s)	526, 652
PspFI	CCCAGC	1 cut(s)	1782
PspGI	CCWGG	2 cut(s)	526, 652
PspN4I	GGNNCC	2 cut(s)	430, 1360
PspPI	GGNCC	2 cut(s)	75, 1375
PstNI	CAGNNNCTG	3 cut(s)	344, 829, 1960
PsuI	RGATCY	4 cut(s)	298, 1659, 1769, 1906
PvuI	CGATCG	1 cut(s)	109
PvuII	CAGCTG	2 cut(s)	826, 1654
RsaI	GTAC	7 cut(s)	260, 343, 804, 833, 1254, 1264, 1877
RsaNI	GTAC	7 cut(s)	259, 342, 803, 832, 1253, 1263, 1876
RseI	CAYNNNNRTG	2 cut(s)	1070, 1704
SalI	GTCGAC	2 cut(s)	53, 930
SapI	GCTCTTC	1 cut(s)	1007
SaqAI	TTAA	7 cut(s)	186, 266, 330, 492, 1586, 1821, 1914
Sau96I	GGNCC	2 cut(s)	75, 1375
SchI	GAGTC	3 cut(s)	979, 1891, 1928
ScrFI	CCNGG	3 cut(s)	528, 654, 1632
SduI	GDGCHC	3 cut(s)	1384, 1414, 1932
SfaNI	GCATC	3 cut(s)	862, 1737, 1804
SfcI	CTRYAG	1 cut(s)	1295
SmiMI	CAYNNNNRTG	2 cut(s)	1070, 1704
SmlI	CTYRAG	2 cut(s)	1451, 1497
SmoI	CTYRAG	2 cut(s)	1451, 1497
SnaBI	TACGTA	1 cut(s)	802
SphI	GCATGC	1 cut(s)	1128
Sse9I	AATT	9 cut(s)	111, 683, 935, 1190, 1235, 1552, 1583, 1587, 1822
SsiI	CCGC	8 cut(s)	31, 206, 238, 371, 853, 1133, 1858, 1892
SspMI	CTAG	4 cut(s)	129, 912, 1440, 1853
StyD4I	CCNGG	3 cut(s)	526, 652, 1630
StyI	CCWWGG	5 cut(s)	93, 595, 708, 749, 1204
TaaI	ACNGT	2 cut(s)	1223, 1324
TaiI	ACGT	1 cut(s)	804
TaqI	TCGA	7 cut(s)	48, 54, 109, 465, 931, 1484, 1608
TasI	AATT	9 cut(s)	111, 683, 935, 1190, 1235, 1552, 1583, 1587, 1822
TatI	WGTACW	1 cut(s)	1262
TauI	GCSGC	5 cut(s)	209, 241, 373, 856, 1860
Tru1I	TTAA	7 cut(s)	186, 266, 330, 492, 1586, 1821, 1914
Tru9I	TTAA	7 cut(s)	186, 266, 330, 492, 1586, 1821, 1914
TscAI	CASTG	4 cut(s)	460, 1135, 1228, 1726
TseFI	GTSAC	2 cut(s)	781, 1072
TseI	GCWGC	5 cut(s)	235, 352, 545, 826, 1565
Tsp45I	GTSAC	2 cut(s)	781, 1072
TspDTI	ATGAA	7 cut(s)	77, 293, 601, 695, 1284, 1331, 1594
TspGWI	ACGGA	7 cut(s)	238, 311, 731, 849, 1082, 1778, 1967
TspRI	CASTG	4 cut(s)	460, 1135, 1228, 1726
Van91I	CCANNNNNTGG	1 cut(s)	94
VspI	ATTAAT	2 cut(s)	492, 1586
XapI	RAATTY	1 cut(s)	683
XceI	RCATGY	3 cut(s)	557, 1128, 1263
XcmI	CCANNNNNNNNNTGG	2 cut(s)	602, 1369
XmiI	GTMKAC	4 cut(s)	54, 293, 745, 931
XspI	CTAG	4 cut(s)	129, 912, 1440, 1853
Zsp2I	ATGCAT	2 cut(s)	1126, 1819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.