Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003378

Physical Location & Seq

Genomic Coordinates Forward (+)

26111082 .. 26113094

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G021530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1974 bp

ATGGAAGGCAAAATGGATCATTTGGCGCATGAGAGGAGCAAGGCACAGTTCAGTGTCAAGGAGATGAAGGTCATCTGGGCCGGTTCTCTCCACGCCTTCCAAGTCTCTGATCGGATTTCCCAACTCGTGGCCAGCGATCCAGGCTTTAGAAAGGACAACAGAGCTGTGCTAAGCAGGAATGAGTTGTTTAAAAGTGCTCTGAGAAAAGCAGCTTATGTGCGGAAAAGGATCAATGAGCTTGCACTTTCTGAAGAAGAGGCATCATGGTTGAGGTTCTATGTTGATGAATTAGCATATGCTTATATGCATTGGACAACGTTTGTGCCTGCTATTAAAGGGTCTGCTACTGAGGAGCAGCAACAAAAGTGGTTACCTTTGGCAAACAACATGCAGATAATCGGTACTTACGCACAAACTGAACTTGGTCATGGCTCCAATGTTATAGGCCTTGAGACAACCGCGACTTTTGACCAGGAGACAGATGACTTCATCATCCATAGTCCTACTGTTGCTACACATGCTGTTGTTTATGCTCGGCTTATTACGGATGGCCAAGATTATGGAGTTCATGGTTTCCTAGTCCAAATTCGGAGCTTGGATGATCATTTTCCTCTTCTAGGTGTTACAGTTGGTGATATTGGGATGAAATTTGGAAGTGGAGCATTCAATTCCATGGACAATGGTTTCCTTAGATTCGATCAGGTGCGCATTCCAAGGAATCAAATGCTGATGAGGGTCTCACAAGTCACTAGACAAGGAAAGTATGTAGAATCCAACGTTCCAAAGCAGCTAATTTATGGAGCTATGGTTTATGTGAGACAAACCATCGTAGCTGATGCTTCCATTTTTCTGTCAAGAGCAGTATGTATTGCTACCAGGTACAGTGCTGGTCGTCGACAATTTGGTCCTCCACATAAGGATCAAAATGGTAATGGTGTTGAGACACAGATCATTGATTACAAGACTCAGCAAAGTAGACTCTTCCCTTTGCTGGCTTCTGCCTATGCTTTCAGATTTGTTGGCGAGTGGTTGAAATGGCTATATAGAGATTTGATCCAAAAGTTGGAAGCAAACGATTTCTCTACACTGCCCGAGGCGCATGCCTGCACTGCTGGTTTGAAGTCCTTGACAACTTCCGCTGCTGTTGATGGCATCGAAGAATGTCTGAAGCTATGTGGTGGCCATGGTTACTTGTCTAGCTGTGGACTTCCTGAGTTATATGCTACTTTTGTCCCTGCTTGTACTTATGAAGGCGATAACATTGTACTACTTCTACAGGTTTCAAGGTTTCGAATGAAGACCATTTCTCAGTTGCAGACTGGGAAAAAGCCTATTGGAACAACAACTTATATGGGACATGTGGAGCATTTGATCCAATGTCACTGTAAGGTTCAAAAAGCTGAGGATTGGTTGAACCCTAGTGTAATACTTGAGGCATTTGAAGCAAGGGCTATTAGATTATCGGTTGCTTGTGCCGAAAATCTCACCAAGTTTGCCACTCCATTACAAGGCTTTTCAGAACTCTCACCTGATTTAGTTGAAGCTGCAGTTGCTCATTGCCAACTAATTGTGGTTTCCAAGTTCATTGAGAAGCTGCAGCAAAACATTGAAGGAAATGGAGTGAAACAACAGTTGGAGACCCTCTGCAACATTTACTGTTTGAATCTTATTCACAAACATCTGGGTGATTTTCTGTCCACTGGAAGCATCAGTCCCAAGCAAGCTTCACTTGCCAGTGATCAACTTAGGAGTCTCTATTCCAAGCTTCGTCCCAATGTTATTGCCCTTGTTGATGCATTTAATTACACAGATCATTTCCTTGGCTCAGTTCTTGGGCGCTATGACGGTAATGTGTATCCAAACCTCTATGAGGAAGCATGGAAAGATCCGCTCAATGATTCTATTGTACCTGATGGGTATCATGAATTCATCAAGCCTGTGCTGAAGCAACAGCTCCAAAATGAAAGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001676 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009694 GO:0009695 GO:0009987 GO:0010035 GO:0010038 GO:0010817 GO:0016042 GO:0016053 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030054 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0042221 GO:0042445 GO:0042446 GO:0042579 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0046686 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0072330 GO:0097159 GO:1901265 GO:1901363 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_M Acyl-CoA_ox_N

Protein Analysis

657

Amino Acids

73.69

Weight (kDa)

6.71

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyl-CoA_ox_N	PF14749	19 - 133	3.2e-26	Acyl-coenzyme A oxidase N-terminal
ACOX_C_alpha1	PF22924	266 - 430	8.8e-61	Acyl-CoA oxidase, C-alpha1 domain
ACOX	PF01756	472 - 649	1.2e-55	Acyl-CoA oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35690 AT4G16760 AT4G16760
fragaria_vesca	FvH4_5g19470
malus_domestica	MD04G1060500.v1.1 MD13G1127300.v1.1
prunus_persica	Prupe.5G065100_v2.0.a1 Prupe.7G067100_v2.0.a1
pyrus_communis	pycom04g05410 pycom13g11040
rosa_chinensis	RchiOBHm_Chr3g0481201 RchiOBHm_Chr3g0481221 RchiOBHm_Chr7g0204041
rosa_laevigata	RLG00000003492 RLG00000023411 RLG00000023414 RLG00000023415
rosa_multiflora	Rmu_sc0000064.1_g000003 Rmu_sc0001311.1_g000009 Rmu_sc0001551.1_g000009 Rmu_sc0001843.1_g000010 Rmu_sc0009910.1_g000005
rosa_roxburghii	Rroxscaffold_3G00253400 Rroxscaffold_6G00400590
rosa_rugosa	Rorug03G0190400 Rorug07G0080100 Rorug07G0080200
rosa_samantha	Rh3AG241300 Rh3BG276600 Rh3DG268000 Rh7AG210200 Rh7BG208600
rosa_wichuraiana	Rw3G021520 Rw3G021530 Rw3G021550 Rw7G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	903
Acc16I	TGCGCA	1 cut(s)	707
AccB7I	CCANNNNNTGG	2 cut(s)	127, 1063
AccBSI	CCGCTC	1 cut(s)	1891
AccI	GTMKAC	2 cut(s)	895, 976
AccII	CGCG	1 cut(s)	461
AciI	CCGC	4 cut(s)	220, 459, 1137, 1889
AclI	AACGTT	2 cut(s)	317, 777
AclWI	GGATC	7 cut(s)	24, 131, 236, 927, 1048, 1366, 1880
AcoI	YGGCCR	3 cut(s)	129, 550, 1180
AcsI	RAATTY	3 cut(s)	585, 647, 1925
AcuI	CTGAAG	3 cut(s)	270, 1187, 1964
AfaI	GTAC	5 cut(s)	403, 881, 1243, 1266, 1908
AfiI	CCNNNNNNNGG	6 cut(s)	127, 617, 991, 1063, 1508, 1870
AflIII	ACRYGT	1 cut(s)	1357
AjnI	CCWGG	3 cut(s)	139, 471, 875
AjuI	GAANNNNNNNTTGG	2 cut(s)	1616, 1648
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	8 cut(s)	109, 446, 470, 742, 811, 935, 1631, 1757
AlwI	GGATC	7 cut(s)	24, 131, 236, 927, 1048, 1366, 1880
Ama87I	CYCGRG	1 cut(s)	1091
AoxI	GGCC	5 cut(s)	78, 129, 445, 550, 1180
ApeKI	GCWGC	7 cut(s)	209, 355, 787, 1139, 1544, 1594, 1597
ApoI	RAATTY	3 cut(s)	585, 647, 1925
AspLEI	GCGC	4 cut(s)	28, 708, 1099, 1839
AspS9I	GGNCC	2 cut(s)	78, 905
AsuHPI	GGTGA	4 cut(s)	644, 1477, 1518, 1697
AsuII	TTCGAA	1 cut(s)	1291
AvaI	CYCGRG	1 cut(s)	1091
AvaII	GGWCC	1 cut(s)	905
BalI	TGGCCA	3 cut(s)	131, 552, 1182
BauI	CACGAG	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	1304
Bbv12I	GWGCWC	1 cut(s)	199
BbvCI	CCTCAGC	1 cut(s)	1401
BbvI	GCAGC	7 cut(s)	221, 367, 799, 1126, 1531, 1581, 1609
BccI	CCATC	4 cut(s)	542, 833, 1142, 1907
BcgI	CGANNNNNNTGC	2 cut(s)	1082, 1116
BciT130I	CCWGG	3 cut(s)	141, 473, 877
BciVI	GTATCC	1 cut(s)	1866
BclI	TGATCA	2 cut(s)	601, 1738
BcoDI	GTCTC	8 cut(s)	109, 446, 470, 742, 811, 935, 1631, 1757
BfaI	CTAG	5 cut(s)	578, 617, 750, 1197, 1419
BfmI	CTRYAG	3 cut(s)	1274, 1545, 1595
BfoI	RGCGCY	1 cut(s)	1840
BfuI	GTATCC	1 cut(s)	1866
BisI	GCNGC	7 cut(s)	210, 356, 788, 1140, 1545, 1595, 1598
BlpI	GCTNAGC	1 cut(s)	170
BlsI	GCNGC	7 cut(s)	211, 357, 789, 1141, 1546, 1596, 1599
Bme1390I	CCNGG	3 cut(s)	141, 473, 877
Bme18I	GGWCC	1 cut(s)	905
BmeT110I	CYCGRG	1 cut(s)	1091
BmgT120I	GGNCC	2 cut(s)	78, 905
BmiI	GGNNCC	1 cut(s)	433
BmrFI	CCNGG	3 cut(s)	141, 473, 877
BmrI	ACTGGG	1 cut(s)	1329
BmsI	GCATC	5 cut(s)	269, 826, 1161, 1716, 1783
BmuI	ACTGGG	1 cut(s)	1329
BpiI	GAAGAC	1 cut(s)	1304
Bpu10I	CCTNAGC	1 cut(s)	1401
Bpu1102I	GCTNAGC	1 cut(s)	170
Bpu14I	TTCGAA	1 cut(s)	1291
BpuEI	CTTGAG	2 cut(s)	470, 1451
BsaBI	GATNNNNATC	1 cut(s)	1917
BsaI	GGTCTC	2 cut(s)	742, 1631
BsaJI	CCNNGG	5 cut(s)	672, 713, 1092, 1183, 1819
BsaXI	ACNNNNNCTCC	2 cut(s)	792, 822
Bsc4I	CCNNNNNNNGG	6 cut(s)	127, 617, 991, 1063, 1508, 1870
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	3 cut(s)	1324, 1705, 1734
Bse3DI	GCAATG	1 cut(s)	1555
Bse8I	GATNNNNATC	1 cut(s)	1917
BseBI	CCWGG	3 cut(s)	141, 473, 877
BseDI	CCNNGG	5 cut(s)	672, 713, 1092, 1183, 1819
BseGI	GGATG	4 cut(s)	492, 553, 604, 648
BseJI	GATNNNNATC	1 cut(s)	1917
BseLI	CCNNNNNNNGG	6 cut(s)	127, 617, 991, 1063, 1508, 1870
BseMI	GCAATG	1 cut(s)	1555
BseMII	CTCAG	7 cut(s)	191, 339, 980, 1203, 1322, 1392, 1839
BseNI	ACTGG	3 cut(s)	1324, 1705, 1734
BseRI	GAGGAG	2 cut(s)	49, 365
BseXI	GCAGC	7 cut(s)	221, 367, 799, 1126, 1531, 1581, 1609
BsgI	GTGCAG	1 cut(s)	1090
Bsh1236I	CGCG	1 cut(s)	461
BshFI	GGCC	5 cut(s)	80, 131, 447, 552, 1182
BsiHKAI	GWGCWC	1 cut(s)	199
BsiHKCI	CYCGRG	1 cut(s)	1091
BsiSI	CCGG	1 cut(s)	81
BslFI	GGGAC	4 cut(s)	1217, 1368, 1698, 1755
BslI	CCNNNNNNNGG	6 cut(s)	127, 617, 991, 1063, 1508, 1870
BsmAI	GTCTC	8 cut(s)	109, 446, 470, 742, 811, 935, 1631, 1757
BsmFI	GGGAC	4 cut(s)	1217, 1368, 1698, 1755
BsmI	GAATGC	2 cut(s)	662, 708
BsnI	GGCC	5 cut(s)	80, 131, 447, 552, 1182
Bso31I	GGTCTC	2 cut(s)	742, 1631
BsoBI	CYCGRG	1 cut(s)	1091
Bsp119I	TTCGAA	1 cut(s)	1291
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp1720I	GCTNAGC	1 cut(s)	170
Bsp19I	CCATGG	2 cut(s)	672, 1183
BspACI	CCGC	4 cut(s)	220, 459, 1137, 1889
BspANI	GGCC	5 cut(s)	80, 131, 447, 552, 1182
BspCNI	CTCAG	7 cut(s)	192, 340, 979, 1204, 1321, 1393, 1838
BspFNI	CGCG	1 cut(s)	461
BspHI	TCATGA	1 cut(s)	1921
BspLI	GGNNCC	1 cut(s)	433
BspMAI	CTGCAG	2 cut(s)	1549, 1599
BspPI	GGATC	7 cut(s)	24, 131, 236, 927, 1048, 1366, 1880
BspT104I	TTCGAA	1 cut(s)	1291
BspTNI	GGTCTC	2 cut(s)	742, 1631
BsrBI	CCGCTC	1 cut(s)	1891
BsrDI	GCAATG	1 cut(s)	1555
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	3 cut(s)	1324, 1705, 1734
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	5 cut(s)	672, 713, 1092, 1183, 1819
BssSI	CACGAG	1 cut(s)	125
BssT1I	CCWWGG	4 cut(s)	672, 713, 1183, 1819
Bst2BI	CACGAG	1 cut(s)	125
Bst2UI	CCWGG	3 cut(s)	141, 473, 877
Bst4CI	ACNGT	8 cut(s)	48, 508, 628, 884, 1385, 1632, 1658, 1847
Bst6I	CTCTTC	3 cut(s)	249, 618, 986
BstBI	TTCGAA	1 cut(s)	1291
BstC8I	GCNNGC	7 cut(s)	133, 240, 327, 993, 1101, 1105, 1722
BstDSI	CCRYGG	2 cut(s)	672, 1183
BstEII	GGTNACC	1 cut(s)	369
BstENI	CCTNNNNNAGG	2 cut(s)	615, 1868
BstF5I	GGATG	4 cut(s)	492, 553, 604, 648
BstFNI	CGCG	1 cut(s)	461
BstH2I	RGCGCY	1 cut(s)	1840
BstHHI	GCGC	4 cut(s)	28, 708, 1099, 1839
BstMAI	GTCTC	8 cut(s)	109, 446, 470, 742, 811, 935, 1631, 1757
BstMWI	GCNNNNNNNGC	7 cut(s)	141, 518, 1096, 1109, 1442, 1550, 1730
BstNI	CCWGG	3 cut(s)	141, 473, 877
BstNSI	RCATGY	4 cut(s)	391, 521, 1103, 1361
BstPI	GGTNACC	1 cut(s)	369
BstSCI	CCNGG	3 cut(s)	139, 471, 875
BstSFI	CTRYAG	3 cut(s)	1274, 1545, 1595
BstUI	CGCG	1 cut(s)	461
BstV1I	GCAGC	7 cut(s)	221, 367, 799, 1126, 1531, 1581, 1609
BstV2I	GAAGAC	1 cut(s)	1304
BstX2I	RGATCY	1 cut(s)	1885
BstXI	CCANNNNNNTGG	1 cut(s)	560
BstYI	RGATCY	1 cut(s)	1885
BsuI	GTATCC	1 cut(s)	1866
BsuRI	GGCC	5 cut(s)	80, 131, 447, 552, 1182
BtgI	CCRYGG	2 cut(s)	672, 1183
BtsCI	GGATG	4 cut(s)	492, 553, 604, 648
BtsI	GCAGTG	2 cut(s)	1085, 1107
BtsIMutI	CAGTG	7 cut(s)	58, 889, 1085, 1107, 1381, 1698, 1741
Cac8I	GCNNGC	7 cut(s)	133, 240, 327, 993, 1101, 1105, 1722
CciI	TCATGA	1 cut(s)	1921
CfoI	GCGC	4 cut(s)	28, 708, 1099, 1839
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	78, 905
CsiI	ACCWGGT	1 cut(s)	875
Csp6I	GTAC	5 cut(s)	402, 880, 1242, 1265, 1907
CspCI	CAANNNNNGTGG	2 cut(s)	347, 382
CviQI	GTAC	5 cut(s)	402, 880, 1242, 1265, 1907
DraI	TTTAAA	1 cut(s)	190
DrdI	GACNNNNNNGTC	1 cut(s)	903
DseDI	GACNNNNNNGTC	1 cut(s)	903
EaeI	YGGCCR	3 cut(s)	129, 550, 1180
Eam1104I	CTCTTC	3 cut(s)	249, 618, 986
EarI	CTCTTC	3 cut(s)	249, 618, 986
Eco130I	CCWWGG	4 cut(s)	672, 713, 1183, 1819
Eco147I	AGGCCT	1 cut(s)	447
Eco31I	GGTCTC	2 cut(s)	742, 1631
Eco47I	GGWCC	1 cut(s)	905
Eco57I	CTGAAG	3 cut(s)	270, 1187, 1964
Eco88I	CYCGRG	1 cut(s)	1091
Eco91I	GGTNACC	1 cut(s)	369
EcoNI	CCTNNNNNAGG	2 cut(s)	615, 1868
EcoO65I	GGTNACC	1 cut(s)	369
EcoRI	GAATTC	1 cut(s)	1925
EcoRII	CCWGG	3 cut(s)	139, 471, 875
EcoT14I	CCWWGG	4 cut(s)	672, 713, 1183, 1819
EcoT22I	ATGCAT	2 cut(s)	309, 1798
ErhI	CCWWGG	4 cut(s)	672, 713, 1183, 1819
FalI	AAGNNNNNCTT	2 cut(s)	1713, 1745
FaqI	GGGAC	4 cut(s)	1217, 1368, 1698, 1755
FauNDI	CATATG	1 cut(s)	295
FbaI	TGATCA	2 cut(s)	601, 1738
FblI	GTMKAC	2 cut(s)	895, 976
Fnu4HI	GCNGC	7 cut(s)	210, 356, 788, 1140, 1545, 1595, 1598
FokI	GGATG	4 cut(s)	479, 560, 611, 655
Fsp4HI	GCNGC	7 cut(s)	210, 356, 788, 1140, 1545, 1595, 1598
FspAI	RTGCGCAY	1 cut(s)	707
FspBI	CTAG	5 cut(s)	578, 617, 750, 1197, 1419
FspI	TGCGCA	1 cut(s)	707
GlaI	GCGC	4 cut(s)	27, 707, 1098, 1838
GluI	GCNGC	7 cut(s)	210, 356, 788, 1140, 1545, 1595, 1598
HaeII	RGCGCY	1 cut(s)	1840
HaeIII	GGCC	5 cut(s)	80, 131, 447, 552, 1182
HapII	CCGG	1 cut(s)	81
HhaI	GCGC	4 cut(s)	28, 708, 1099, 1839
Hin6I	GCGC	4 cut(s)	26, 706, 1097, 1837
HinP1I	GCGC	4 cut(s)	26, 706, 1097, 1837
HincII	GTYRAC	1 cut(s)	896
HindII	GTYRAC	1 cut(s)	896
HindIII	AAGCTT	2 cut(s)	1722, 1763
HinfI	GANTC	8 cut(s)	693, 718, 770, 964, 978, 1663, 1750, 1898
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	4 cut(s)	644, 1477, 1518, 1697
Hpy166II	GTNNAC	4 cut(s)	896, 977, 1205, 1698
Hpy188I	TCNGA	8 cut(s)	109, 114, 201, 250, 591, 1013, 1167, 1519
Hpy188III	TCNNGA	3 cut(s)	855, 1211, 1922
Hpy8I	GTNNAC	4 cut(s)	896, 977, 1205, 1698
Hpy99I	CGWCG	1 cut(s)	897
HpyAV	CCTTC	4 cut(s)	61, 106, 1244, 1604
HpyCH4III	ACNGT	8 cut(s)	48, 508, 628, 884, 1385, 1632, 1658, 1847
HpyCH4IV	ACGT	2 cut(s)	317, 777
HpyCH4V	TGCA	9 cut(s)	242, 307, 391, 1107, 1315, 1547, 1597, 1647, 1796
HpyF10VI	GCNNNNNNNGC	7 cut(s)	141, 518, 1096, 1109, 1442, 1550, 1730
HpySE526I	ACGT	2 cut(s)	317, 777
HspAI	GCGC	4 cut(s)	26, 706, 1097, 1837
Ksp22I	TGATCA	2 cut(s)	601, 1738
LmnI	GCTCC	8 cut(s)	36, 352, 437, 591, 659, 800, 1363, 1959
Lsp1109I	GCAGC	7 cut(s)	221, 367, 799, 1126, 1531, 1581, 1609
LweI	GCATC	5 cut(s)	269, 826, 1161, 1716, 1783
MabI	ACCWGGT	1 cut(s)	875
MaeI	CTAG	5 cut(s)	578, 617, 750, 1197, 1419
MaeII	ACGT	2 cut(s)	317, 777
MaeIII	GTNAC	5 cut(s)	369, 622, 745, 1187, 1379
MbiI	CCGCTC	1 cut(s)	1891
MboII	GAAGA	6 cut(s)	263, 266, 605, 973, 1169, 1309
MflI	RGATCY	1 cut(s)	1885
MhlI	GDGCHC	1 cut(s)	199
MlsI	TGGCCA	3 cut(s)	131, 552, 1182
MluCI	AATT	9 cut(s)	287, 585, 647, 667, 792, 899, 1566, 1801, 1925
MluNI	TGGCCA	3 cut(s)	131, 552, 1182
MlyI	GAGTC	3 cut(s)	958, 972, 1759
MmeI	TCCRAC	3 cut(s)	798, 1044, 1614
Mox20I	TGGCCA	3 cut(s)	131, 552, 1182
Mph1103I	ATGCAT	2 cut(s)	309, 1798
MscI	TGGCCA	3 cut(s)	131, 552, 1182
MseI	TTAA	3 cut(s)	189, 333, 1800
MslI	CAYNNNNRTG	1 cut(s)	1683
Msp20I	TGGCCA	3 cut(s)	131, 552, 1182
MspA1I	CMGCKG	1 cut(s)	1139
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	3 cut(s)	141, 473, 877
Mva1269I	GAATGC	2 cut(s)	662, 708
MvaI	CCWGG	3 cut(s)	141, 473, 877
MvnI	CGCG	1 cut(s)	461
MwoI	GCNNNNNNNGC	7 cut(s)	141, 518, 1096, 1109, 1442, 1550, 1730
NcoI	CCATGG	2 cut(s)	672, 1183
NdeI	CATATG	1 cut(s)	295
NlaIV	GGNNCC	1 cut(s)	433
NmeAIII	GCCGAG	1 cut(s)	514
NmuCI	GTSAC	2 cut(s)	745, 1379
NsbI	TGCGCA	1 cut(s)	707
NsiI	ATGCAT	2 cut(s)	309, 1798
NspI	RCATGY	4 cut(s)	391, 521, 1103, 1361
NspV	TTCGAA	1 cut(s)	1291
PaeI	GCATGC	1 cut(s)	1103
PagI	TCATGA	1 cut(s)	1921
PceI	AGGCCT	1 cut(s)	447
PciI	ACATGT	1 cut(s)	1357
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PctI	GAATGC	2 cut(s)	662, 708
PfeI	GAWTC	5 cut(s)	693, 718, 770, 1663, 1898
PflMI	CCANNNNNTGG	2 cut(s)	127, 1063
PkrI	GCNGC	7 cut(s)	211, 357, 789, 1141, 1546, 1596, 1599
PleI	GAGTC	3 cut(s)	958, 972, 1758
PpsI	GAGTC	3 cut(s)	958, 972, 1758
PscI	ACATGT	1 cut(s)	1357
Psp1406I	AACGTT	2 cut(s)	317, 777
Psp6I	CCWGG	3 cut(s)	139, 471, 875
PspEI	GGTNACC	1 cut(s)	369
PspGI	CCWGG	3 cut(s)	139, 471, 875
PspN4I	GGNNCC	1 cut(s)	433
PspPI	GGNCC	2 cut(s)	78, 905
PstI	CTGCAG	2 cut(s)	1549, 1599
PsuI	RGATCY	1 cut(s)	1885
RsaI	GTAC	5 cut(s)	403, 881, 1243, 1266, 1908
RsaNI	GTAC	5 cut(s)	402, 880, 1242, 1265, 1907
RseI	CAYNNNNRTG	1 cut(s)	1683
SalI	GTCGAC	1 cut(s)	894
SaqAI	TTAA	3 cut(s)	189, 333, 1800
SatI	GCNGC	7 cut(s)	210, 356, 788, 1140, 1545, 1595, 1598
Sau96I	GGNCC	2 cut(s)	78, 905
SchI	GAGTC	3 cut(s)	958, 972, 1759
ScrFI	CCNGG	3 cut(s)	141, 473, 877
SduI	GDGCHC	1 cut(s)	199
SexAI	ACCWGGT	1 cut(s)	875
SfaNI	GCATC	5 cut(s)	269, 826, 1161, 1716, 1783
SfcI	CTRYAG	3 cut(s)	1274, 1545, 1595
SfuI	TTCGAA	1 cut(s)	1291
SinI	GGWCC	1 cut(s)	905
SmiMI	CAYNNNNRTG	1 cut(s)	1683
SmlI	CTYRAG	2 cut(s)	449, 1430
SmoI	CTYRAG	2 cut(s)	449, 1430
SphI	GCATGC	1 cut(s)	1103
Sse9I	AATT	9 cut(s)	287, 585, 647, 667, 792, 899, 1566, 1801, 1925
SseBI	AGGCCT	1 cut(s)	447
SsiI	CCGC	4 cut(s)	220, 459, 1137, 1889
SspMI	CTAG	5 cut(s)	578, 617, 750, 1197, 1419
StuI	AGGCCT	1 cut(s)	447
StyD4I	CCNGG	3 cut(s)	139, 471, 875
StyI	CCWWGG	4 cut(s)	672, 713, 1183, 1819
TaaI	ACNGT	8 cut(s)	48, 508, 628, 884, 1385, 1632, 1658, 1847
TaiI	ACGT	2 cut(s)	320, 780
TaqI	TCGA	4 cut(s)	696, 895, 1155, 1291
TasI	AATT	9 cut(s)	287, 585, 647, 667, 792, 899, 1566, 1801, 1925
TatI	WGTACW	2 cut(s)	1241, 1264
TfiI	GAWTC	5 cut(s)	693, 718, 770, 1663, 1898
Tru1I	TTAA	3 cut(s)	189, 333, 1800
Tru9I	TTAA	3 cut(s)	189, 333, 1800
TscAI	CASTG	7 cut(s)	58, 889, 1092, 1114, 1388, 1705, 1741
TseFI	GTSAC	2 cut(s)	745, 1379
TseI	GCWGC	7 cut(s)	209, 355, 787, 1139, 1544, 1594, 1597
Tsp45I	GTSAC	2 cut(s)	745, 1379
TspGWI	ACGGA	1 cut(s)	560
TspRI	CASTG	7 cut(s)	58, 889, 1092, 1114, 1388, 1705, 1741
Van91I	CCANNNNNTGG	2 cut(s)	127, 1063
VpaK11BI	GGWCC	1 cut(s)	905
XagI	CCTNNNNNAGG	2 cut(s)	615, 1868
XapI	RAATTY	3 cut(s)	585, 647, 1925
XceI	RCATGY	4 cut(s)	391, 521, 1103, 1361
XmiI	GTMKAC	2 cut(s)	895, 976
XspI	CTAG	5 cut(s)	578, 617, 750, 1197, 1419
Zsp2I	ATGCAT	2 cut(s)	309, 1798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.