Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003378

Physical Location & Seq

Genomic Coordinates Forward (+)

6242399 .. 6244771

Gene Structure 2373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0080200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGTCCAGACTCCTCTCCTCCTCCTTGTTCCTCCTCCTCCTCACTCTCTTCGCCGCCTTCTCTCTCTCCTCCGCCGAGATCCGCACCTCGTCGGTCCGCGACGACTGGCGTCCGATCATCCCCTTCGACGAATTCGGCTTCACACACAAAGGCCGCCTCGAGCTCAAAGTCTCCAAGATCGCCCTCTCCCAGCAACCCGGCCCGGATCCGGATCTCTCCCGGGTCGGCTTCTTCCTCTGCACCCGGGACTCATGGATCCACGTCTTCCAGCAGCTCGAGGAGGGCGAGATCGGCTGCGCCCTCCTCTCCAATCTCGTCAAGCGCGTCTACACCTTCGACCAGCTCAAAGGCGGCGGCGACAGCTTCTCCACCGTGTTCTCCGAGACCGACGCCGATCAGTACACGCTTCTCTTCGCCAACTGCCTCCAGCCGCTTAGGGTTTCGATGGAGGTCAAGTCCGTGATGTACAATCTCGAAGGGAAGAACGGCGATAGCCGGGATTATCTCTCCGCCGGTAAAACTATTCTCCCGAGAATTTACTTCGTTTTCTCTCTGGCCTATATTGTTCTCGTCGGGCTCTGGATTTTCGTGCTCTACAAGAAACGACTCACCGTTTTCCGGATTCATTTCTTCATGCTCGCCGTGCTGGTTCTCAAGACTCTGAACTTGCTCTGTGAGGCTGAGGACAAGTCGTATATCAAACGCACCGGTTCGGCTCACGGCTGGGATGTGCTGTTCTATATCTTCAGCTTCTTGAAGGGAATTACTTTGTTTACTCTCATTGTTTTGATTGGGACCGGGTGGTCGTTCTTGAAGCCGTACTTGGCGGACAAGGAGAAGAAGGTTTTGATGATTGTGATTCCGCTACAGGTGGTTGCCAACATTGCCCAGGTTGTGATTGATGAGACCGGGCCTTTCGGCCACGACTGGGTTACTTGGAAGCAGGTGTTTTTGCTTGTGGATGTGGTGTGCTGCTGCGCGGTGTTGTTTCCGATTGTGTGGTCTATCAAGAACTTGCGTGAGGCTGCGAGGACTGATGGGAAGGCGGCTGTGAACTTGATGAAGCTGACTCTGTTCAGGCAGTACTACATTGTGGTTATATGCTACATTTACTTTACGAGGGTTGTGGTTTATGCATTGGAGACTATTACTTCATATCGCTACCTTTGGACCAGTGTGGTGGCTGCCGAGTTGGCTACTCTGGCCTTCTATGTGTTTACTGGGTACAAGTTCAAGCCAGAGGCTCACAATCCGTACTTTGTGATCGATGACGAGGAGGAAGAGGCTGCAGCTGAGCAGCTGAAGCTTGAAGATGAGTTCGAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001676 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009694 GO:0009695 GO:0009987 GO:0010035 GO:0010038 GO:0010817 GO:0016042 GO:0016053 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030054 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0042221 GO:0042445 GO:0042446 GO:0042579 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0046686 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0072330 GO:0097159 GO:1901265 GO:1901363 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_M Acyl-CoA_ox_N

Protein Analysis

442

Amino Acids

50.53

Weight (kDa)

6.14

Isoelectric Point (pI)

27.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAND6-7_N	PF21904	31 - 157	4.6e-31	CAND6/7, N-terminal domain
GOST_TM	PF06814	177 - 417	2.7e-32	GOST, seven transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35690 AT4G16760 AT4G16760
fragaria_vesca	FvH4_5g19470
malus_domestica	MD04G1060500.v1.1 MD13G1127300.v1.1
prunus_persica	Prupe.5G065100_v2.0.a1 Prupe.7G067100_v2.0.a1
pyrus_communis	pycom04g05410 pycom13g11040
rosa_chinensis	RchiOBHm_Chr3g0481201 RchiOBHm_Chr3g0481221 RchiOBHm_Chr7g0204041
rosa_laevigata	RLG00000003492 RLG00000023411 RLG00000023414 RLG00000023415
rosa_multiflora	Rmu_sc0000064.1_g000003 Rmu_sc0001311.1_g000009 Rmu_sc0001551.1_g000009 Rmu_sc0001843.1_g000010 Rmu_sc0009910.1_g000005
rosa_roxburghii	Rroxscaffold_3G00253400 Rroxscaffold_6G00400590
rosa_rugosa	Rorug03G0190400 Rorug07G0080100 Rorug07G0080200
rosa_samantha	Rh3AG241300 Rh3BG276600 Rh3DG268000 Rh7AG210200 Rh7BG208600
rosa_wichuraiana	Rw3G021520 Rw3G021530 Rw3G021550 Rw7G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	934
AasI	GACNNNNNNGTC	1 cut(s)	802
Acc36I	ACCTGC	1 cut(s)	934
AccI	GTMKAC	1 cut(s)	327
AccII	CGCG	3 cut(s)	99, 324, 980
AccIII	TCCGGA	2 cut(s)	208, 618
AclWI	GGATC	6 cut(s)	73, 200, 213, 219, 250, 263
AcoI	YGGCCR	1 cut(s)	919
AcsI	RAATTY	2 cut(s)	131, 534
AcuI	CTGAAG	2 cut(s)	730, 1322
AcyI	GRCGYC	2 cut(s)	109, 390
AfaI	GTAC	6 cut(s)	401, 467, 821, 1085, 1226, 1256
AfiI	CCNNNNNNNGG	3 cut(s)	208, 618, 928
AgeI	ACCGGT	1 cut(s)	707
AgsI	TTSAA	4 cut(s)	757, 814, 1234, 1310
AjiI	CACGTC	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	888
AjuI	GAANNNNNNNTTGG	2 cut(s)	806, 838
AloI	GAACNNNNNNTCC	2 cut(s)	719, 751
AluBI	AGCT	9 cut(s)	163, 274, 343, 363, 750, 1066, 1292, 1300, 1306
AluI	AGCT	9 cut(s)	163, 274, 343, 363, 750, 1066, 1292, 1300, 1306
Alw21I	GWGCWC	2 cut(s)	165, 594
Alw26I	GTCTC	4 cut(s)	175, 377, 899, 1136
AlwI	GGATC	6 cut(s)	73, 200, 213, 219, 250, 263
Ama87I	CYCGRG	5 cut(s)	158, 219, 243, 275, 529
Aor13HI	TCCGGA	2 cut(s)	208, 618
AoxI	GGCC	6 cut(s)	151, 199, 555, 911, 919, 1203
ApeKI	GCWGC	9 cut(s)	271, 294, 972, 975, 1025, 1184, 1286, 1289, 1297
ApoI	RAATTY	2 cut(s)	131, 534
AsiGI	ACCGGT	1 cut(s)	707
AspLEI	GCGC	3 cut(s)	299, 324, 980
AspS9I	GGNCC	5 cut(s)	94, 200, 795, 911, 1170
AsuC2I	CCSGG	9 cut(s)	198, 203, 220, 221, 244, 245, 497, 799, 910
AsuHPI	GGTGA	1 cut(s)	601
AsuII	TTCGAA	1 cut(s)	1320
AvaI	CYCGRG	5 cut(s)	158, 219, 243, 275, 529
AvaII	GGWCC	3 cut(s)	94, 795, 1170
BamHI	GGATCC	2 cut(s)	205, 255
BanII	GRGCYC	2 cut(s)	165, 579
BbsI	GAAGAC	1 cut(s)	256
Bbv12I	GWGCWC	2 cut(s)	165, 594
BbvCI	CCTCAGC	1 cut(s)	681
BbvI	GCAGC	9 cut(s)	281, 283, 959, 962, 1012, 1171, 1273, 1301, 1309
BccI	CCATC	2 cut(s)	439, 1031
BceAI	ACGGC	4 cut(s)	502, 626, 736, 802
BciT130I	CCWGG	1 cut(s)	890
BcnI	CCSGG	9 cut(s)	198, 203, 220, 221, 244, 245, 497, 799, 910
BcoDI	GTCTC	4 cut(s)	175, 377, 899, 1136
BfmI	CTRYAG	2 cut(s)	866, 1287
BfuAI	ACCTGC	1 cut(s)	934
BglI	GCCNNNNNGGC	1 cut(s)	1193
BlpI	GCTNAGC	1 cut(s)	1293
BmcAI	AGTACT	1 cut(s)	1085
Bme18I	GGWCC	3 cut(s)	94, 795, 1170
BmeT110I	CYCGRG	5 cut(s)	158, 219, 243, 275, 529
BmgBI	CACGTC	1 cut(s)	262
BmgT120I	GGNCC	5 cut(s)	94, 200, 795, 911, 1170
BmiI	GGNNCC	3 cut(s)	207, 257, 796
BmrI	ACTGGG	2 cut(s)	937, 1230
BmuI	ACTGGG	2 cut(s)	937, 1230
BoxI	GACNNNNGTC	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	410
Bpu10I	CCTNAGC	2 cut(s)	434, 681
Bpu1102I	GCTNAGC	1 cut(s)	1293
Bpu14I	TTCGAA	1 cut(s)	1320
BpuEI	CTTGAG	1 cut(s)	638
BpuMI	CCSGG	9 cut(s)	198, 203, 220, 221, 244, 245, 497, 799, 910
Bsa29I	ATCGAT	1 cut(s)	1266
BsaBI	GATNNNNATC	1 cut(s)	210
BsaHI	GRCGYC	2 cut(s)	109, 390
BsaI	GGTCTC	2 cut(s)	377, 899
BsaJI	CCNNGG	3 cut(s)	219, 243, 888
BsaWI	WCCGGW	3 cut(s)	208, 618, 707
BsaXI	ACNNNNNCTCC	4 cut(s)	350, 380, 440, 470
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 618, 928
Bse118I	RCCGGY	2 cut(s)	512, 707
Bse1I	ACTGG	4 cut(s)	110, 932, 1173, 1225
Bse3DI	GCAATG	1 cut(s)	882
Bse8I	GATNNNNATC	1 cut(s)	210
BseAI	TCCGGA	2 cut(s)	208, 618
BseBI	CCWGG	1 cut(s)	890
BseCI	ATCGAT	1 cut(s)	1266
BseDI	CCNNGG	3 cut(s)	219, 243, 888
BseGI	GGATG	3 cut(s)	117, 733, 967
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	3 cut(s)	208, 618, 928
BseMI	GCAATG	1 cut(s)	882
BseMII	CTCAG	2 cut(s)	672, 1284
BseNI	ACTGG	4 cut(s)	110, 932, 1173, 1225
BseRI	GAGGAG	9 cut(s)	7, 10, 23, 26, 29, 58, 293, 293, 1289
BseXI	GCAGC	9 cut(s)	281, 283, 959, 962, 1012, 1171, 1273, 1301, 1309
BseYI	CCCAGC	2 cut(s)	189, 723
BsgI	GTGCAG	1 cut(s)	223
Bsh1236I	CGCG	3 cut(s)	99, 324, 980
BshFI	GGCC	6 cut(s)	153, 201, 557, 913, 921, 1205
BshTI	ACCGGT	1 cut(s)	707
BshVI	ATCGAT	1 cut(s)	1266
BsiHKAI	GWGCWC	2 cut(s)	165, 594
BsiHKCI	CYCGRG	5 cut(s)	158, 219, 243, 275, 529
BslFI	GGGAC	2 cut(s)	260, 808
BslI	CCNNNNNNNGG	3 cut(s)	208, 618, 928
BsmAI	GTCTC	4 cut(s)	175, 377, 899, 1136
BsmFI	GGGAC	2 cut(s)	260, 808
BsnI	GGCC	6 cut(s)	153, 201, 557, 913, 921, 1205
Bso31I	GGTCTC	2 cut(s)	377, 899
BsoBI	CYCGRG	5 cut(s)	158, 219, 243, 275, 529
Bsp119I	TTCGAA	1 cut(s)	1320
Bsp1286I	GDGCHC	3 cut(s)	165, 579, 594
Bsp13I	TCCGGA	2 cut(s)	208, 618
Bsp1407I	TGTACA	1 cut(s)	465
Bsp143I	GATC	9 cut(s)	78, 114, 177, 205, 211, 255, 288, 394, 1263
Bsp1720I	GCTNAGC	1 cut(s)	1293
BspANI	GGCC	6 cut(s)	153, 201, 557, 913, 921, 1205
BspCNI	CTCAG	2 cut(s)	673, 1285
BspDI	ATCGAT	1 cut(s)	1266
BspEI	TCCGGA	2 cut(s)	208, 618
BspFNI	CGCG	3 cut(s)	99, 324, 980
BspLI	GGNNCC	3 cut(s)	207, 257, 796
BspMAI	CTGCAG	1 cut(s)	1291
BspMI	ACCTGC	1 cut(s)	934
BspPI	GGATC	6 cut(s)	73, 200, 213, 219, 250, 263
BspT104I	TTCGAA	1 cut(s)	1320
BspTNI	GGTCTC	2 cut(s)	377, 899
BsrDI	GCAATG	1 cut(s)	882
BsrFI	RCCGGY	2 cut(s)	512, 707
BsrGI	TGTACA	1 cut(s)	465
BsrI	ACTGG	4 cut(s)	110, 932, 1173, 1225
BssAI	RCCGGY	2 cut(s)	512, 707
BssECI	CCNNGG	3 cut(s)	219, 243, 888
BssMI	GATC	9 cut(s)	78, 114, 177, 205, 211, 255, 288, 394, 1263
BssNI	GRCGYC	2 cut(s)	109, 390
Bst2UI	CCWGG	1 cut(s)	890
Bst4CI	ACNGT	2 cut(s)	373, 613
Bst6I	CTCTTC	3 cut(s)	53, 416, 1275
BstACI	GRCGYC	2 cut(s)	109, 390
BstAUI	TGTACA	1 cut(s)	465
BstBI	TTCGAA	1 cut(s)	1320
BstC8I	GCNNGC	1 cut(s)	639
BstDEI	CTNAG	3 cut(s)	434, 681, 1293
BstF5I	GGATG	3 cut(s)	117, 733, 967
BstFNI	CGCG	3 cut(s)	99, 324, 980
BstHHI	GCGC	3 cut(s)	299, 324, 980
BstKTI	GATC	9 cut(s)	81, 117, 180, 208, 214, 258, 291, 397, 1266
BstMAI	GTCTC	4 cut(s)	175, 377, 899, 1136
BstMBI	GATC	9 cut(s)	78, 114, 177, 205, 211, 255, 288, 394, 1263
BstMWI	GCNNNNNNNGC	7 cut(s)	291, 360, 643, 884, 1193, 1202, 1303
BstNI	CCWGG	1 cut(s)	890
BstPAI	GACNNNNGTC	1 cut(s)	108
BstSFI	CTRYAG	2 cut(s)	866, 1287
BstUI	CGCG	3 cut(s)	99, 324, 980
BstV1I	GCAGC	9 cut(s)	281, 283, 959, 962, 1012, 1171, 1273, 1301, 1309
BstV2I	GAAGAC	1 cut(s)	256
BstX2I	RGATCY	4 cut(s)	78, 205, 211, 255
BstXI	CCANNNNNNTGG	1 cut(s)	1180
BstYI	RGATCY	4 cut(s)	78, 205, 211, 255
Bsu15I	ATCGAT	1 cut(s)	1266
BsuRI	GGCC	6 cut(s)	153, 201, 557, 913, 921, 1205
BsuTUI	ATCGAT	1 cut(s)	1266
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	3 cut(s)	117, 733, 967
BtsIMutI	CAGTG	1 cut(s)	1180
BveI	ACCTGC	1 cut(s)	934
Cac8I	GCNNGC	1 cut(s)	639
CfoI	GCGC	3 cut(s)	299, 324, 980
Cfr10I	RCCGGY	2 cut(s)	512, 707
Cfr13I	GGNCC	5 cut(s)	94, 200, 795, 911, 1170
Cfr9I	CCCGGG	2 cut(s)	219, 243
ClaI	ATCGAT	1 cut(s)	1266
CpoI	CGGWCCG	1 cut(s)	94
CseI	GACGC	3 cut(s)	98, 313, 398
Csp6I	GTAC	6 cut(s)	400, 466, 820, 1084, 1225, 1255
CspAI	ACCGGT	1 cut(s)	707
CspI	CGGWCCG	1 cut(s)	94
CviAII	CATG	2 cut(s)	252, 634
CviQI	GTAC	6 cut(s)	400, 466, 820, 1084, 1225, 1255
DdeI	CTNAG	3 cut(s)	434, 681, 1293
DpnI	GATC	9 cut(s)	80, 116, 179, 207, 213, 257, 290, 396, 1265
DpnII	GATC	9 cut(s)	78, 114, 177, 205, 211, 255, 288, 394, 1263
DrdI	GACNNNNNNGTC	1 cut(s)	802
DseDI	GACNNNNNNGTC	1 cut(s)	802
EaeI	YGGCCR	1 cut(s)	919
Eam1104I	CTCTTC	3 cut(s)	53, 416, 1275
EarI	CTCTTC	3 cut(s)	53, 416, 1275
EciI	GGCGGA	3 cut(s)	61, 499, 842
Ecl136II	GAGCTC	1 cut(s)	163
Eco24I	GRGCYC	2 cut(s)	165, 579
Eco31I	GGTCTC	2 cut(s)	377, 899
Eco47I	GGWCC	3 cut(s)	94, 795, 1170
Eco53kI	GAGCTC	1 cut(s)	163
Eco57I	CTGAAG	2 cut(s)	730, 1322
Eco88I	CYCGRG	5 cut(s)	158, 219, 243, 275, 529
EcoICRI	GAGCTC	1 cut(s)	163
EcoRI	GAATTC	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	888
EcoT22I	ATGCAT	1 cut(s)	1138
EcoT38I	GRGCYC	2 cut(s)	165, 579
FaeI	CATG	2 cut(s)	255, 637
FalI	AAGNNNNNCTT	2 cut(s)	806, 838
FaqI	GGGAC	2 cut(s)	260, 808
FatI	CATG	2 cut(s)	251, 633
FblI	GTMKAC	1 cut(s)	327
FokI	GGATG	3 cut(s)	104, 740, 974
FriOI	GRGCYC	2 cut(s)	165, 579
GlaI	GCGC	3 cut(s)	298, 323, 979
GsaI	CCCAGC	2 cut(s)	193, 727
GsuI	CTGGAG	1 cut(s)	410
HaeIII	GGCC	6 cut(s)	153, 201, 557, 913, 921, 1205
HgaI	GACGC	3 cut(s)	98, 313, 398
HhaI	GCGC	3 cut(s)	299, 324, 980
Hin1I	GRCGYC	2 cut(s)	109, 390
Hin1II	CATG	2 cut(s)	255, 637
Hin6I	GCGC	3 cut(s)	297, 322, 978
HinP1I	GCGC	3 cut(s)	297, 322, 978
HindIII	AAGCTT	1 cut(s)	1304
HinfI	GANTC	7 cut(s)	9, 248, 606, 622, 658, 859, 1069
HphI	GGTGA	1 cut(s)	601
Hpy166II	GTNNAC	5 cut(s)	328, 402, 774, 1054, 1218
Hpy188I	TCNGA	4 cut(s)	114, 382, 663, 993
Hpy8I	GTNNAC	5 cut(s)	328, 402, 774, 1054, 1218
Hpy99I	CGWCG	5 cut(s)	94, 104, 131, 392, 575
HpyAV	CCTTC	8 cut(s)	67, 133, 343, 470, 751, 835, 1036, 1216
HpyCH4III	ACNGT	2 cut(s)	373, 613
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	3 cut(s)	240, 1136, 1289
HpyF10VI	GCNNNNNNNGC	7 cut(s)	291, 360, 643, 884, 1193, 1202, 1303
HpyF3I	CTNAG	3 cut(s)	434, 681, 1293
HpySE526I	ACGT	1 cut(s)	261
Hsp92I	GRCGYC	2 cut(s)	109, 390
Hsp92II	CATG	2 cut(s)	255, 637
HspAI	GCGC	3 cut(s)	297, 322, 978
Kpn2I	TCCGGA	2 cut(s)	208, 618
Kzo9I	GATC	9 cut(s)	78, 114, 177, 205, 211, 255, 288, 394, 1263
Lsp1109I	GCAGC	9 cut(s)	281, 283, 959, 962, 1012, 1171, 1273, 1301, 1309
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	931
MalI	GATC	9 cut(s)	80, 116, 179, 207, 213, 257, 290, 396, 1265
MboI	GATC	9 cut(s)	78, 114, 177, 205, 211, 255, 288, 394, 1263
MflI	RGATCY	4 cut(s)	78, 205, 211, 255
MhlI	GDGCHC	3 cut(s)	165, 579, 594
MluCI	AATT	4 cut(s)	131, 534, 762, 1322
MlyI	GAGTC	5 cut(s)	3, 242, 600, 652, 1063
Mph1103I	ATGCAT	1 cut(s)	1138
MroI	TCCGGA	2 cut(s)	208, 618
MspA1I	CMGCKG	2 cut(s)	1292, 1300
MvaI	CCWGG	1 cut(s)	890
MvnI	CGCG	3 cut(s)	99, 324, 980
MwoI	GCNNNNNNNGC	7 cut(s)	291, 360, 643, 884, 1193, 1202, 1303
NciI	CCSGG	9 cut(s)	198, 203, 220, 221, 244, 245, 497, 799, 910
NdeII	GATC	9 cut(s)	78, 114, 177, 205, 211, 255, 288, 394, 1263
NlaIII	CATG	2 cut(s)	255, 637
NlaIV	GGNNCC	3 cut(s)	207, 257, 796
NmeAIII	GCCGAG	2 cut(s)	100, 1213
NsiI	ATGCAT	1 cut(s)	1138
NspV	TTCGAA	1 cut(s)	1320
PaeR7I	CTCGAG	2 cut(s)	158, 275
PaqCI	CACCTGC	1 cut(s)	934
PcsI	WCGNNNNNNNCGW	2 cut(s)	282, 321
PfeI	GAWTC	2 cut(s)	622, 859
PinAI	ACCGGT	1 cut(s)	707
PleI	GAGTC	5 cut(s)	3, 242, 600, 652, 1063
PpsI	GAGTC	5 cut(s)	3, 242, 600, 652, 1063
PshAI	GACNNNNGTC	1 cut(s)	108
Psp124BI	GAGCTC	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	888
PspFI	CCCAGC	2 cut(s)	189, 723
PspGI	CCWGG	1 cut(s)	888
PspN4I	GGNNCC	3 cut(s)	207, 257, 796
PspPI	GGNCC	5 cut(s)	94, 200, 795, 911, 1170
PspXI	VCTCGAGB	2 cut(s)	158, 275
PstI	CTGCAG	1 cut(s)	1291
PsuI	RGATCY	4 cut(s)	78, 205, 211, 255
PvuII	CAGCTG	2 cut(s)	1292, 1300
RsaI	GTAC	6 cut(s)	401, 467, 821, 1085, 1226, 1256
RsaNI	GTAC	6 cut(s)	400, 466, 820, 1084, 1225, 1255
Rsr2I	CGGWCCG	1 cut(s)	94
RsrII	CGGWCCG	1 cut(s)	94
SacI	GAGCTC	1 cut(s)	165
Sau3AI	GATC	9 cut(s)	78, 114, 177, 205, 211, 255, 288, 394, 1263
Sau96I	GGNCC	5 cut(s)	94, 200, 795, 911, 1170
ScaI	AGTACT	1 cut(s)	1085
SchI	GAGTC	5 cut(s)	3, 242, 600, 652, 1063
SduI	GDGCHC	3 cut(s)	165, 579, 594
SfcI	CTRYAG	2 cut(s)	866, 1287
Sfr274I	CTCGAG	2 cut(s)	158, 275
SfuI	TTCGAA	1 cut(s)	1320
SinI	GGWCC	3 cut(s)	94, 795, 1170
SlaI	CTCGAG	2 cut(s)	158, 275
SmaI	CCCGGG	2 cut(s)	221, 245
SmlI	CTYRAG	3 cut(s)	158, 275, 653
SmoI	CTYRAG	3 cut(s)	158, 275, 653
Sse9I	AATT	4 cut(s)	131, 534, 762, 1322
SstI	GAGCTC	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	373, 613
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	8 cut(s)	126, 159, 276, 336, 443, 474, 1266, 1320
TaqII	GACCGA	2 cut(s)	82, 401
TasI	AATT	4 cut(s)	131, 534, 762, 1322
TatI	WGTACW	3 cut(s)	399, 465, 1083
TauI	GCSGC	6 cut(s)	56, 156, 354, 357, 433, 1049
TfiI	GAWTC	2 cut(s)	622, 859
TscAI	CASTG	1 cut(s)	1180
TseI	GCWGC	9 cut(s)	271, 294, 972, 975, 1025, 1184, 1286, 1289, 1297
TspDTI	ATGAA	4 cut(s)	614, 622, 1076, 1143
TspGWI	ACGGA	2 cut(s)	448, 1242
TspMI	CCCGGG	2 cut(s)	219, 243
TspRI	CASTG	1 cut(s)	1180
VpaK11BI	GGWCC	3 cut(s)	94, 795, 1170
XapI	RAATTY	2 cut(s)	131, 534
XhoI	CTCGAG	2 cut(s)	158, 275
XmaI	CCCGGG	2 cut(s)	219, 243
XmiI	GTMKAC	1 cut(s)	327
ZrmI	AGTACT	1 cut(s)	1085
Zsp2I	ATGCAT	1 cut(s)	1138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.