Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001843.1

Orthogroup ID

OG0003378

Physical Location & Seq

Genomic Coordinates Reverse (-)

55591 .. 59831

Gene Structure 4241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001843.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1995 bp

atggagggtgtggatcatttggctctcgaaaggagcaagacccagttcgatgtggaccagatgaaggtcgcctgggccggctcccgccacgccttggacgtctccgatcgaattggccgcctcgtcgccagtgatccggtgtttaagaaggataatagggctatgctgagtaggaaggacttgtttaaagacactctaagaaaggcagctcatgtctggaagcggatcaacgagcttaaacttactgaagaagaggcatccaggttaaggttttttatcgatcaaccttcatatatggatcttcactggggaatgtttatacctgttattaaaggatcaggtaccgaggagcagcaaaagaagtggttgccgatcgcatacaagatgcaaataattggttgctatgcacagactgaacttggccatggctccaatgtccaagggcttgagaccactgcaacttttgatccaaagacagacgagtttgttattaatagccctacactgacctcaagcaaatggtggcctggtggtttgggaaaagtttcgactcacgctgttgtttttgcgcgtcttattactgatggtcaagaccatggagtgaacggtttcatcgtccaacttcggagcttggatgatcacttgcctcttccaggcgtaactgttggagatatcggaatgaaatttggaagtggtgcatacaactccatggacaatggtgtcctaagatttgatcatgtgcgcatcccaagggatcaaatgttgatgagagtctcacaggttacaagagaaggaaaagttgttctatccaacgttccaaggcaactactttatggaactatggtttttgttcgacaaacaattgtagctgatgcttcctctgcattgtcacgagcagtatgtattgctacaaggtatagtgctgttcgtcgacaatttggttcaaatgatagtggtgttgagacacaggtgattgattacaagactcaacaaagtagactattccctttgctggcttccgcctatgctttcagatttgttggtgagtggttgaaatggctatatacggacgtaacacaaaaactgcaagcaaatgatttttctacattgcctgaggctcatgcatgcactgcgggtttaaagtcattgactacttcagcaactgctgatgccattgaagaatgccggaaattatgtggtggtcatggttatctttctagcagtgggctccccgagttatttgctgtttatatcccggcatgtacatatgaaggagacaatattgttctacttctgcaggttgcaaggtttctgatgaagactgtttctcagctaccgtctggtaaaaaacccgttggaacaacttcctatatggggcgtgcagaacagttgctccaatctcgttctaatgttcagaaagctgaggattggttgaagcctagtgtaatactggaggcatttgaagcaagggctatgagaatgtctgttgcctgtgctaaagaccttagcaagtttgcaaatccagaagagggctttgcggaactatcgcctaatttggtggatgcagcagttgctcattgtcaattgattgttgtttccaagttcattgagaaactgcaacaagacatacccgggaagggagtgaaagaacagttgcagatcctctgtaacgtatatgctttatttcttgttcacaaacatctgggtgattttctctccactggaagtatcacagccaaacaagcttcacttgccaacgatcagcttagatctctatattcccaggtccgccccaatgccattgcccttgttgatgcatttaattacactgaccactaccttagctcaattcttggccgatatgacggtaatgtgtacgcgaaactttatgaggaggcctggaaggatcctctgaatgacacggttgtgccagagggctatcgcgagtacatccaacctttgctgaagcaacagctccgaaatgcaaggctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001676 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009694 GO:0009695 GO:0009987 GO:0010035 GO:0010038 GO:0010817 GO:0016042 GO:0016053 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030054 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0042221 GO:0042445 GO:0042446 GO:0042579 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0046686 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0072330 GO:0097159 GO:1901265 GO:1901363 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_M Acyl-CoA_ox_N

Protein Analysis

664

Amino Acids

74.1

Weight (kDa)

8.5

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35690 AT4G16760 AT4G16760
fragaria_vesca	FvH4_5g19470
malus_domestica	MD04G1060500.v1.1 MD13G1127300.v1.1
prunus_persica	Prupe.5G065100_v2.0.a1 Prupe.7G067100_v2.0.a1
pyrus_communis	pycom04g05410 pycom13g11040
rosa_chinensis	RchiOBHm_Chr3g0481201 RchiOBHm_Chr3g0481221 RchiOBHm_Chr7g0204041
rosa_laevigata	RLG00000003492 RLG00000023411 RLG00000023414 RLG00000023415
rosa_multiflora	Rmu_sc0000064.1_g000003 Rmu_sc0001311.1_g000009 Rmu_sc0001551.1_g000009 Rmu_sc0001843.1_g000010 Rmu_sc0009910.1_g000005
rosa_roxburghii	Rroxscaffold_3G00253400 Rroxscaffold_6G00400590
rosa_rugosa	Rorug03G0190400 Rorug07G0080100 Rorug07G0080200
rosa_samantha	Rh3AG241300 Rh3BG276600 Rh3DG268000 Rh7AG210200 Rh7BG208600
rosa_wichuraiana	Rw3G021520 Rw3G021530 Rw3G021550 Rw7G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	719
AatII	GACGTC	1 cut(s)	102
Acc16I	TGCGCA	1 cut(s)	743
Acc36I	ACCTGC	1 cut(s)	1288
Acc65I	GGTACC	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	341
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccI	GTMKAC	2 cut(s)	931, 997
AccII	CGCG	3 cut(s)	571, 1880, 1944
AciI	CCGC	7 cut(s)	85, 118, 223, 1020, 1133, 1538, 1789
AclI	AACGTT	1 cut(s)	813
AcoI	YGGCCR	3 cut(s)	115, 421, 1855
AcsI	RAATTY	1 cut(s)	683
AcuI	CTGAAG	3 cut(s)	267, 1140, 1985
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	4 cut(s)	343, 1264, 1877, 1949
AfiI	CCNNNNNNNGG	8 cut(s)	64, 94, 267, 653, 1012, 1374, 1529, 1637
AgsI	TTSAA	5 cut(s)	945, 1054, 1178, 1435, 1463
AjnI	CCWGG	6 cut(s)	71, 260, 526, 652, 1782, 1898
AleI	CACNNNNGTG	1 cut(s)	1925
AloI	GAACNNNNNNTCC	4 cut(s)	786, 818, 1377, 1409
Alw26I	GTCTC	5 cut(s)	106, 443, 778, 956, 1269
AlwNI	CAGNNNCTG	1 cut(s)	1163
Ama87I	CYCGRG	2 cut(s)	1232, 1631
AoxI	GGCC	6 cut(s)	75, 115, 421, 524, 1855, 1896
ApeKI	GCWGC	3 cut(s)	206, 352, 1565
ApoI	RAATTY	1 cut(s)	683
AseI	ATTAAT	1 cut(s)	492
Asp700I	GAANNNNTTC	3 cut(s)	544, 608, 1363
Asp718I	GGTACC	1 cut(s)	341
AspLEI	GCGC	2 cut(s)	571, 744
AspS9I	GGNCC	3 cut(s)	55, 75, 1786
AsuC2I	CCSGG	3 cut(s)	1256, 1632, 1633
AsuHPI	GGTGA	3 cut(s)	982, 1055, 1718
AvaI	CYCGRG	2 cut(s)	1232, 1631
AvaII	GGWCC	2 cut(s)	55, 1786
AxyI	CCTNAGG	1 cut(s)	1113
BalI	TGGCCA	1 cut(s)	423
BamHI	GGATCC	1 cut(s)	1906
BanI	GGYRCC	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	1230
BauI	CACGAG	1 cut(s)	891
BbsI	GAAGAC	1 cut(s)	1325
BbvCI	CCTCAGC	1 cut(s)	1422
BbvI	GCAGC	3 cut(s)	218, 364, 1577
BccI	CCATC	1 cut(s)	578
BcgI	CGANNNNNNTGC	2 cut(s)	1223, 1257
BciT130I	CCWGG	6 cut(s)	73, 262, 528, 654, 1784, 1900
BclI	TGATCA	2 cut(s)	637, 733
BcnI	CCSGG	3 cut(s)	1256, 1632, 1633
BcoDI	GTCTC	5 cut(s)	106, 443, 778, 956, 1269
BfaI	CTAG	2 cut(s)	1218, 1440
BfmI	CTRYAG	1 cut(s)	1295
BfuAI	ACCTGC	1 cut(s)	1288
BglII	AGATCT	1 cut(s)	1769
BisI	GCNGC	4 cut(s)	118, 207, 353, 1566
BlsI	GCNGC	4 cut(s)	119, 208, 354, 1567
Bme1390I	CCNGG	9 cut(s)	73, 262, 528, 654, 1256, 1632, 1633, 1784, 1900
Bme18I	GGWCC	2 cut(s)	55, 1786
BmeT110I	CYCGRG	2 cut(s)	1232, 1631
BmgT120I	GGNCC	3 cut(s)	55, 75, 1786
BmiI	GGNNCC	5 cut(s)	82, 343, 430, 1229, 1908
BmrFI	CCNGG	9 cut(s)	73, 262, 528, 654, 1256, 1632, 1633, 1784, 1900
BmrI	ACTGGG	2 cut(s)	37, 316
BmsI	GCATC	7 cut(s)	266, 375, 753, 862, 1159, 1552, 1804
BmuI	ACTGGG	2 cut(s)	37, 316
BpiI	GAAGAC	1 cut(s)	1325
BpmI	CTGGAG	1 cut(s)	1472
Bpu10I	CCTNAGC	3 cut(s)	1422, 1505, 1841
BpuEI	CTTGAG	2 cut(s)	467, 496
BpuMI	CCSGG	3 cut(s)	1256, 1632, 1633
Bsa29I	ATCGAT	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	443
BsaWI	WCCGGW	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	1377, 1407
Bsc4I	CCNNNNNNNGG	8 cut(s)	64, 94, 267, 653, 1012, 1374, 1529, 1637
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	5 cut(s)	43, 129, 311, 1455, 1726
Bse21I	CCTNAGG	1 cut(s)	1113
Bse3DI	GCAATG	2 cut(s)	1106, 1800
BseBI	CCWGG	6 cut(s)	73, 262, 528, 654, 1784, 1900
BseCI	ATCGAT	1 cut(s)	279
BseGI	GGATG	5 cut(s)	257, 640, 744, 1567, 1950
BseLI	CCNNNNNNNGG	8 cut(s)	64, 94, 267, 653, 1012, 1374, 1529, 1637
BseMI	GCAATG	2 cut(s)	1106, 1800
BseMII	CTCAG	4 cut(s)	158, 1104, 1343, 1413
BseNI	ACTGG	5 cut(s)	43, 129, 311, 1455, 1726
BseRI	GAGGAG	2 cut(s)	362, 1907
BseXI	GCAGC	3 cut(s)	218, 364, 1577
BsgI	GTGCAG	1 cut(s)	1401
Bsh1236I	CGCG	3 cut(s)	571, 1880, 1944
Bsh1285I	CGRYCG	2 cut(s)	109, 375
BshFI	GGCC	6 cut(s)	77, 117, 423, 526, 1857, 1898
BshNI	GGYRCC	1 cut(s)	341
BshVI	ATCGAT	1 cut(s)	279
BsiEI	CGRYCG	2 cut(s)	109, 375
BsiHKCI	CYCGRG	2 cut(s)	1232, 1631
BsiSI	CCGG	5 cut(s)	78, 137, 1186, 1256, 1632
BslI	CCNNNNNNNGG	8 cut(s)	64, 94, 267, 653, 1012, 1374, 1529, 1637
BsmAI	GTCTC	5 cut(s)	106, 443, 778, 956, 1269
BsmBI	CGTCTC	1 cut(s)	106
BsmI	GAATGC	1 cut(s)	1187
BsnI	GGCC	6 cut(s)	77, 117, 423, 526, 1857, 1898
Bso31I	GGTCTC	1 cut(s)	443
BsoBI	CYCGRG	2 cut(s)	1232, 1631
Bsp1286I	GDGCHC	1 cut(s)	1230
Bsp1407I	TGTACA	1 cut(s)	1262
Bsp19I	CCATGG	3 cut(s)	424, 595, 708
Bsp68I	TCGCGA	1 cut(s)	1944
BspACI	CCGC	7 cut(s)	85, 118, 223, 1020, 1133, 1538, 1789
BspANI	GGCC	6 cut(s)	77, 117, 423, 526, 1857, 1898
BspCNI	CTCAG	4 cut(s)	159, 1105, 1342, 1414
BspDI	ATCGAT	1 cut(s)	279
BspFNI	CGCG	3 cut(s)	571, 1880, 1944
BspLI	GGNNCC	5 cut(s)	82, 343, 430, 1229, 1908
BspMAI	CTGCAG	1 cut(s)	1299
BspMI	ACCTGC	1 cut(s)	1288
BspT107I	GGYRCC	1 cut(s)	341
BspTNI	GGTCTC	1 cut(s)	443
BsrDI	GCAATG	2 cut(s)	1106, 1800
BsrFI	RCCGGY	1 cut(s)	77
BsrGI	TGTACA	1 cut(s)	1262
BsrI	ACTGG	5 cut(s)	43, 129, 311, 1455, 1726
BssAI	RCCGGY	1 cut(s)	77
BssNI	GRCGYC	1 cut(s)	99
BssSI	CACGAG	1 cut(s)	891
BssT1I	CCWWGG	7 cut(s)	93, 424, 439, 595, 708, 749, 818
Bst2BI	CACGAG	1 cut(s)	891
Bst2UI	CCWGG	6 cut(s)	73, 262, 528, 654, 1784, 1900
Bst4CI	ACNGT	8 cut(s)	608, 664, 1324, 1338, 1389, 1653, 1868, 1924
Bst6I	CTCTTC	3 cut(s)	246, 654, 1521
BstACI	GRCGYC	1 cut(s)	99
BstAPI	GCANNNNNTGC	2 cut(s)	1130, 1571
BstAUI	TGTACA	1 cut(s)	1262
BstC8I	GCNNGC	5 cut(s)	79, 1014, 1089, 1126, 1380
BstDEI	CTNAG	9 cut(s)	167, 197, 725, 1113, 1329, 1422, 1505, 1766, 1841
BstDSI	CCRYGG	3 cut(s)	424, 595, 708
BstENI	CCTNNNNNAGG	1 cut(s)	651
BstF5I	GGATG	5 cut(s)	257, 640, 744, 1567, 1950
BstFNI	CGCG	3 cut(s)	571, 1880, 1944
BstHHI	GCGC	2 cut(s)	571, 744
BstMAI	GTCTC	5 cut(s)	106, 443, 778, 956, 1269
BstMCI	CGRYCG	2 cut(s)	109, 375
BstMWI	GCNNNNNNNGC	6 cut(s)	881, 1130, 1463, 1571, 1742, 1751
BstNI	CCWGG	6 cut(s)	73, 262, 528, 654, 1784, 1900
BstNSI	RCATGY	2 cut(s)	1128, 1263
BstSCI	CCNGG	9 cut(s)	71, 260, 526, 652, 1254, 1630, 1631, 1782, 1898
BstSFI	CTRYAG	1 cut(s)	1295
BstUI	CGCG	3 cut(s)	571, 1880, 1944
BstV1I	GCAGC	3 cut(s)	218, 364, 1577
BstV2I	GAAGAC	1 cut(s)	1325
BstX2I	RGATCY	4 cut(s)	298, 1659, 1769, 1906
BstYI	RGATCY	4 cut(s)	298, 1659, 1769, 1906
Bsu15I	ATCGAT	1 cut(s)	279
Bsu36I	CCTNAGG	1 cut(s)	1113
BsuRI	GGCC	6 cut(s)	77, 117, 423, 526, 1857, 1898
BsuTUI	ATCGAT	1 cut(s)	279
BtgI	CCRYGG	3 cut(s)	424, 595, 708
BtsCI	GGATG	5 cut(s)	257, 640, 744, 1567, 1950
BtsI	GCAGTG	3 cut(s)	453, 1128, 1228
BtsIMutI	CAGTG	8 cut(s)	136, 304, 453, 503, 1128, 1228, 1719, 1827
BtuMI	TCGCGA	1 cut(s)	1944
BveI	ACCTGC	1 cut(s)	1288
Cac8I	GCNNGC	5 cut(s)	79, 1014, 1089, 1126, 1380
CaiI	CAGNNNCTG	1 cut(s)	1163
CfoI	GCGC	2 cut(s)	571, 744
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	3 cut(s)	55, 75, 1786
Cfr9I	CCCGGG	1 cut(s)	1631
ClaI	ATCGAT	1 cut(s)	279
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	4 cut(s)	342, 1263, 1876, 1948
CspCI	CAANNNNNGTGG	2 cut(s)	344, 379
CviAII	CATG	9 cut(s)	212, 425, 596, 709, 737, 1121, 1125, 1205, 1260
CviQI	GTAC	4 cut(s)	342, 1263, 1876, 1948
DdeI	CTNAG	9 cut(s)	167, 197, 725, 1113, 1329, 1422, 1505, 1766, 1841
DraI	TTTAAA	2 cut(s)	187, 1140
DrdI	GACNNNNNNGTC	1 cut(s)	719
DseDI	GACNNNNNNGTC	1 cut(s)	719
EaeI	YGGCCR	3 cut(s)	115, 421, 1855
Eam1104I	CTCTTC	3 cut(s)	246, 654, 1521
EarI	CTCTTC	3 cut(s)	246, 654, 1521
EciI	GGCGGA	2 cut(s)	1009, 1778
Eco130I	CCWWGG	7 cut(s)	93, 424, 439, 595, 708, 749, 818
Eco147I	AGGCCT	1 cut(s)	1898
Eco24I	GRGCYC	1 cut(s)	1230
Eco31I	GGTCTC	1 cut(s)	443
Eco32I	GATATC	1 cut(s)	673
Eco47I	GGWCC	2 cut(s)	55, 1786
Eco57I	CTGAAG	3 cut(s)	267, 1140, 1985
Eco81I	CCTNAGG	1 cut(s)	1113
Eco88I	CYCGRG	2 cut(s)	1232, 1631
EcoNI	CCTNNNNNAGG	1 cut(s)	651
EcoRII	CCWGG	6 cut(s)	71, 260, 526, 652, 1782, 1898
EcoRV	GATATC	1 cut(s)	673
EcoT14I	CCWWGG	7 cut(s)	93, 424, 439, 595, 708, 749, 818
EcoT22I	ATGCAT	2 cut(s)	1126, 1819
EcoT38I	GRGCYC	1 cut(s)	1230
ErhI	CCWWGG	7 cut(s)	93, 424, 439, 595, 708, 749, 818
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	9 cut(s)	215, 428, 599, 712, 740, 1124, 1128, 1208, 1263
FalI	AAGNNNNNCTT	2 cut(s)	1734, 1766
FatI	CATG	9 cut(s)	211, 424, 595, 708, 736, 1120, 1124, 1204, 1259
FauI	CCCGC	2 cut(s)	92, 1126
FauNDI	CATATG	1 cut(s)	1267
FbaI	TGATCA	2 cut(s)	637, 733
FblI	GTMKAC	2 cut(s)	931, 997
Fnu4HI	GCNGC	4 cut(s)	118, 207, 353, 1566
FokI	GGATG	5 cut(s)	244, 647, 731, 1574, 1937
FriOI	GRGCYC	1 cut(s)	1230
Fsp4HI	GCNGC	4 cut(s)	118, 207, 353, 1566
FspAI	RTGCGCAY	1 cut(s)	743
FspBI	CTAG	2 cut(s)	1218, 1440
FspI	TGCGCA	1 cut(s)	743
GlaI	GCGC	2 cut(s)	570, 743
GluI	GCNGC	4 cut(s)	118, 207, 353, 1566
GsuI	CTGGAG	1 cut(s)	1472
HaeIII	GGCC	6 cut(s)	77, 117, 423, 526, 1857, 1898
HapII	CCGG	5 cut(s)	78, 137, 1186, 1256, 1632
HgaI	GACGC	1 cut(s)	560
HhaI	GCGC	2 cut(s)	571, 744
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	9 cut(s)	215, 428, 599, 712, 740, 1124, 1128, 1208, 1263
Hin6I	GCGC	2 cut(s)	569, 742
HinP1I	GCGC	2 cut(s)	569, 742
HincII	GTYRAC	1 cut(s)	932
HindII	GTYRAC	1 cut(s)	932
HindIII	AAGCTT	1 cut(s)	1743
HinfI	GANTC	3 cut(s)	550, 771, 985
HpaII	CCGG	5 cut(s)	78, 137, 1186, 1256, 1632
HphI	GGTGA	3 cut(s)	982, 1055, 1718
Hpy166II	GTNNAC	6 cut(s)	55, 604, 932, 998, 1693, 1876
Hpy188I	TCNGA	8 cut(s)	106, 627, 677, 1034, 1314, 1416, 1914, 1979
Hpy188III	TCNNGA	6 cut(s)	26, 217, 590, 891, 1523, 1943
Hpy8I	GTNNAC	6 cut(s)	55, 604, 932, 998, 1693, 1876
Hpy99I	CGWCG	2 cut(s)	128, 933
HpyAV	CCTTC	8 cut(s)	58, 142, 169, 297, 785, 1265, 1630, 1897
HpyCH4III	ACNGT	8 cut(s)	608, 664, 1324, 1338, 1389, 1653, 1868, 1924
HpyCH4IV	ACGT	4 cut(s)	99, 813, 1071, 1671
HpyF10VI	GCNNNNNNNGC	6 cut(s)	881, 1130, 1463, 1571, 1742, 1751
HpyF3I	CTNAG	9 cut(s)	167, 197, 725, 1113, 1329, 1422, 1505, 1766, 1841
HpySE526I	ACGT	4 cut(s)	99, 813, 1071, 1671
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	9 cut(s)	215, 428, 599, 712, 740, 1124, 1128, 1208, 1263
HspAI	GCGC	2 cut(s)	569, 742
KpnI	GGTACC	1 cut(s)	345
KroI	GCCGGC	1 cut(s)	77
KroNI	GCCGGC	1 cut(s)	79
Ksp22I	TGATCA	2 cut(s)	637, 733
LmnI	GCTCC	8 cut(s)	33, 86, 349, 434, 627, 1233, 1398, 1980
Lsp1109I	GCAGC	3 cut(s)	218, 364, 1577
LweI	GCATC	7 cut(s)	266, 375, 753, 862, 1159, 1552, 1804
MaeI	CTAG	2 cut(s)	1218, 1440
MaeII	ACGT	4 cut(s)	99, 813, 1071, 1671
MaeIII	GTNAC	5 cut(s)	658, 781, 888, 1072, 1667
MboII	GAAGA	7 cut(s)	260, 263, 293, 641, 1190, 1330, 1538
MfeI	CAATTG	2 cut(s)	861, 1583
MflI	RGATCY	4 cut(s)	298, 1659, 1769, 1906
MhlI	GDGCHC	1 cut(s)	1230
MlsI	TGGCCA	1 cut(s)	423
MluNI	TGGCCA	1 cut(s)	423
MlyI	GAGTC	3 cut(s)	544, 780, 979
MmeI	TCCRAC	5 cut(s)	643, 646, 834, 1336, 1978
Mox20I	TGGCCA	1 cut(s)	423
Mph1103I	ATGCAT	2 cut(s)	1126, 1819
MroNI	GCCGGC	1 cut(s)	77
MroXI	GAANNNNTTC	3 cut(s)	544, 608, 1363
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	8 cut(s)	144, 186, 237, 266, 330, 492, 1139, 1821
MslI	CAYNNNNRTG	2 cut(s)	1704, 1925
Msp20I	TGGCCA	1 cut(s)	423
MspI	CCGG	5 cut(s)	78, 137, 1186, 1256, 1632
MspR9I	CCNGG	9 cut(s)	73, 262, 528, 654, 1256, 1632, 1633, 1784, 1900
MunI	CAATTG	2 cut(s)	861, 1583
Mva1269I	GAATGC	1 cut(s)	1187
MvaI	CCWGG	6 cut(s)	73, 262, 528, 654, 1784, 1900
MvnI	CGCG	3 cut(s)	571, 1880, 1944
MwoI	GCNNNNNNNGC	6 cut(s)	881, 1130, 1463, 1571, 1742, 1751
NaeI	GCCGGC	1 cut(s)	79
NciI	CCSGG	3 cut(s)	1256, 1632, 1633
NcoI	CCATGG	3 cut(s)	424, 595, 708
NdeI	CATATG	1 cut(s)	1267
NgoMIV	GCCGGC	1 cut(s)	77
NlaIII	CATG	9 cut(s)	215, 428, 599, 712, 740, 1124, 1128, 1208, 1263
NlaIV	GGNNCC	5 cut(s)	82, 343, 430, 1229, 1908
NmuCI	GTSAC	1 cut(s)	888
NruI	TCGCGA	1 cut(s)	1944
NsbI	TGCGCA	1 cut(s)	743
NsiI	ATGCAT	2 cut(s)	1126, 1819
NspI	RCATGY	2 cut(s)	1128, 1263
OliI	CACNNNNGTG	1 cut(s)	1925
PaeI	GCATGC	1 cut(s)	1128
PceI	AGGCCT	1 cut(s)	1898
PcsI	WCGNNNNNNNCGW	2 cut(s)	96, 612
PctI	GAATGC	1 cut(s)	1187
PdiI	GCCGGC	1 cut(s)	79
PdmI	GAANNNNTTC	3 cut(s)	544, 608, 1363
PflMI	CCANNNNNTGG	1 cut(s)	94
PkrI	GCNGC	4 cut(s)	119, 208, 354, 1567
Ple19I	CGATCG	2 cut(s)	109, 375
PleI	GAGTC	3 cut(s)	544, 779, 979
PpsI	GAGTC	3 cut(s)	544, 779, 979
PshBI	ATTAAT	1 cut(s)	492
Psp1406I	AACGTT	1 cut(s)	813
Psp6I	CCWGG	6 cut(s)	71, 260, 526, 652, 1782, 1898
PspGI	CCWGG	6 cut(s)	71, 260, 526, 652, 1782, 1898
PspN4I	GGNNCC	5 cut(s)	82, 343, 430, 1229, 1908
PspPI	GGNCC	3 cut(s)	55, 75, 1786
PstI	CTGCAG	1 cut(s)	1299
PstNI	CAGNNNCTG	1 cut(s)	1163
PsuI	RGATCY	4 cut(s)	298, 1659, 1769, 1906
PvuI	CGATCG	2 cut(s)	109, 375
RruI	TCGCGA	1 cut(s)	1944
RsaI	GTAC	4 cut(s)	343, 1264, 1877, 1949
RsaNI	GTAC	4 cut(s)	342, 1263, 1876, 1948
RseI	CAYNNNNRTG	2 cut(s)	1704, 1925
SalI	GTCGAC	1 cut(s)	930
SaqAI	TTAA	8 cut(s)	144, 186, 237, 266, 330, 492, 1139, 1821
SatI	GCNGC	4 cut(s)	118, 207, 353, 1566
Sau96I	GGNCC	3 cut(s)	55, 75, 1786
SchI	GAGTC	3 cut(s)	544, 780, 979
ScrFI	CCNGG	9 cut(s)	73, 262, 528, 654, 1256, 1632, 1633, 1784, 1900
SduI	GDGCHC	1 cut(s)	1230
SfaNI	GCATC	7 cut(s)	266, 375, 753, 862, 1159, 1552, 1804
SfcI	CTRYAG	1 cut(s)	1295
SinI	GGWCC	2 cut(s)	55, 1786
SmaI	CCCGGG	1 cut(s)	1633
SmiMI	CAYNNNNRTG	2 cut(s)	1704, 1925
SmlI	CTYRAG	2 cut(s)	446, 511
SmoI	CTYRAG	2 cut(s)	446, 511
SphI	GCATGC	1 cut(s)	1128
SseBI	AGGCCT	1 cut(s)	1898
SsiI	CCGC	7 cut(s)	85, 118, 223, 1020, 1133, 1538, 1789
SspI	AATATT	1 cut(s)	1282
SspMI	CTAG	2 cut(s)	1218, 1440
StuI	AGGCCT	1 cut(s)	1898
StyD4I	CCNGG	9 cut(s)	71, 260, 526, 652, 1254, 1630, 1631, 1782, 1898
StyI	CCWWGG	7 cut(s)	93, 424, 439, 595, 708, 749, 818
TaaI	ACNGT	8 cut(s)	608, 664, 1324, 1338, 1389, 1653, 1868, 1924
TaiI	ACGT	4 cut(s)	102, 816, 1074, 1674
TaqI	TCGA	7 cut(s)	27, 48, 109, 279, 548, 853, 931
TatI	WGTACW	2 cut(s)	1262, 1947
TauI	GCSGC	1 cut(s)	120
Tru1I	TTAA	8 cut(s)	144, 186, 237, 266, 330, 492, 1139, 1821
Tru9I	TTAA	8 cut(s)	144, 186, 237, 266, 330, 492, 1139, 1821
TscAI	CASTG	8 cut(s)	136, 311, 460, 510, 1135, 1228, 1726, 1834
TseFI	GTSAC	1 cut(s)	888
TseI	GCWGC	3 cut(s)	206, 352, 1565
Tsp45I	GTSAC	1 cut(s)	888
TspDTI	ATGAA	7 cut(s)	77, 279, 601, 695, 1284, 1331, 1594
TspGWI	ACGGA	1 cut(s)	1082
TspMI	CCCGGG	1 cut(s)	1631
TspRI	CASTG	8 cut(s)	136, 311, 460, 510, 1135, 1228, 1726, 1834
Van91I	CCANNNNNTGG	1 cut(s)	94
VpaK11BI	GGWCC	2 cut(s)	55, 1786
VspI	ATTAAT	1 cut(s)	492
XagI	CCTNNNNNAGG	1 cut(s)	651
XapI	RAATTY	1 cut(s)	683
XceI	RCATGY	2 cut(s)	1128, 1263
XmaI	CCCGGG	1 cut(s)	1631
XmiI	GTMKAC	2 cut(s)	931, 997
XmnI	GAANNNNTTC	3 cut(s)	544, 608, 1363
XspI	CTAG	2 cut(s)	1218, 1440
ZraI	GACGTC	1 cut(s)	100
Zsp2I	ATGCAT	2 cut(s)	1126, 1819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.