Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001311.1

Orthogroup ID

OG0003378

Physical Location & Seq

Genomic Coordinates Reverse (-)

30576 .. 34814

Gene Structure 4239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001311.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1995 bp

atggagggtgtggatcatttggctctcgaaaggagcaagacccagttcgatgtggaccagatgaaggtcgtctgggccggctcccgccacgcattggacgtctccgatcgaattggccgcctcgtcgccagtgatccggtgtttaagaaggataatagggctatgctgagtaggaaggacttgtttaaagacactctaagaaaggcagctcatgtctggaagcggatcaacgagcttaaacttactgaagaagaggcatccaggttaaggttttttatcgatcaaccttcatatatggatcttcactggggaatgtttatacctgttattaaaggatcaggtaccgaggagcagcaaaagaagtggttgccgatcgcatacaagatgcaaataattggttgctatgcacagactgaacttggccatggctccaatgtccaagggcttgagaccactgcaacttttgatccaaagacagacgagtttgttattaatagccctacactgacctcaagcaaatggtggcctggtggtttgggaaaagtttcgactcacgctgttgtttttgcgcgtcttattactgatggtcaagaccatggagtgaacggtttcatcgtccaacttcggagcttggatgatcacttgcctcttccaggcgtaactgttggagatatcggaatgaaatttggaagtggtgcatacaactccatggacaatggtgtcctaagatttgatcatgtgcgcatcccaagggatcaaatgttgatgagagtctcacaggttacaagagaaggaaaagttgttctatccaacgttccaaggcaactactttatggaactatggtttttgttcgacaaacaattgtagctgatgcttcctctgcattgtcacgagcagtatgtattgctacaaggtatagtgctgttcgtcgacaatttggttcaaatgatagtggtgttgagacacaggtgattgattacaagactcaacaaagtagactattccctttgctggcttccgcctatgctttcagatttgttggtgagtggttgaaatggctatatacggacgtaacacaaaaactgcaagcaaatgatttttctacattgcctgaggctcatgcatgcactgcgggtttaaagtcattgactacttcagcaactgctgatgccattgaagaatgccggaaattatgtggtggtcatggttatctttctagcagtgggctccccgagttatttgctgtttatatcccggcatgtacatatgaaggagacaatattgttctacttctgcaggttgcaaggtttctgatgaagactgtttctcagctaccgtctggtaaaaaacccgttggaacaacttcctatatggggcgtgcagaacagttgctccaatctcgttctaatgttcagaaagctgaggattggttgaagcctagtgtaatactggaggcatttgaagcaagggctatgagaatgtctgttgcctgtgctaaagaccttagcaagtttgcaaatccagaagagggctttgcggaactatcgcctaatttggtggatgcagcagttgctcattgtcaattgattgttgtttccaagttcattgagaaactgcaacaagacatacccgggaagggagtgaaagaacagttgcagatcctctgtaacgtatatgctttatttcttgttcacaaacatctgggtgattttctctccactggaagtatcacagccaaacaagcttcacttgccaacgatcagcttagatctctatattcccaggtccgccccaatgccattgcccttgttgatgcatttaattacactgaccactaccttagctcaattcttggccgatatgacggtaatgtgtacgcgaaactttatgaggaggcctggaaggatcctctgaatgacacggttgtgccagagggctatcgcgagtacatccaacctttgctgaagcaacagctccgaaatgcaaggctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001676 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009694 GO:0009695 GO:0009987 GO:0010035 GO:0010038 GO:0010817 GO:0016042 GO:0016053 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030054 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0042221 GO:0042445 GO:0042446 GO:0042579 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0046686 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:0072330 GO:0097159 GO:1901265 GO:1901363 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_M Acyl-CoA_ox_N

Protein Analysis

664

Amino Acids

74.13

Weight (kDa)

8.5

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35690 AT4G16760 AT4G16760
fragaria_vesca	FvH4_5g19470
malus_domestica	MD04G1060500.v1.1 MD13G1127300.v1.1
prunus_persica	Prupe.5G065100_v2.0.a1 Prupe.7G067100_v2.0.a1
pyrus_communis	pycom04g05410 pycom13g11040
rosa_chinensis	RchiOBHm_Chr3g0481201 RchiOBHm_Chr3g0481221 RchiOBHm_Chr7g0204041
rosa_laevigata	RLG00000003492 RLG00000023411 RLG00000023414 RLG00000023415
rosa_multiflora	Rmu_sc0000064.1_g000003 Rmu_sc0001311.1_g000009 Rmu_sc0001551.1_g000009 Rmu_sc0001843.1_g000010 Rmu_sc0009910.1_g000005
rosa_roxburghii	Rroxscaffold_3G00253400 Rroxscaffold_6G00400590
rosa_rugosa	Rorug03G0190400 Rorug07G0080100 Rorug07G0080200
rosa_samantha	Rh3AG241300 Rh3BG276600 Rh3DG268000 Rh7AG210200 Rh7BG208600
rosa_wichuraiana	Rw3G021520 Rw3G021530 Rw3G021550 Rw7G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	719
AatII	GACGTC	1 cut(s)	102
Acc16I	TGCGCA	1 cut(s)	743
Acc36I	ACCTGC	1 cut(s)	1288
Acc65I	GGTACC	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	341
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccI	GTMKAC	2 cut(s)	931, 997
AccII	CGCG	3 cut(s)	571, 1880, 1944
AciI	CCGC	7 cut(s)	85, 118, 223, 1020, 1133, 1538, 1789
AclI	AACGTT	1 cut(s)	813
AcoI	YGGCCR	3 cut(s)	115, 421, 1855
AcsI	RAATTY	1 cut(s)	683
AcuI	CTGAAG	3 cut(s)	267, 1140, 1985
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	4 cut(s)	343, 1264, 1877, 1949
AfiI	CCNNNNNNNGG	8 cut(s)	64, 94, 267, 653, 1012, 1374, 1529, 1637
AgsI	TTSAA	5 cut(s)	945, 1054, 1178, 1435, 1463
AjnI	CCWGG	5 cut(s)	260, 526, 652, 1782, 1898
AleI	CACNNNNGTG	1 cut(s)	1925
AloI	GAACNNNNNNTCC	4 cut(s)	786, 818, 1377, 1409
Alw26I	GTCTC	5 cut(s)	106, 443, 778, 956, 1269
AlwNI	CAGNNNCTG	1 cut(s)	1163
Ama87I	CYCGRG	2 cut(s)	1232, 1631
AoxI	GGCC	6 cut(s)	75, 115, 421, 524, 1855, 1896
ApeKI	GCWGC	3 cut(s)	206, 352, 1565
ApoI	RAATTY	1 cut(s)	683
AseI	ATTAAT	1 cut(s)	492
Asp700I	GAANNNNTTC	3 cut(s)	544, 608, 1363
Asp718I	GGTACC	1 cut(s)	341
AspLEI	GCGC	2 cut(s)	571, 744
AspS9I	GGNCC	3 cut(s)	55, 75, 1786
AsuC2I	CCSGG	3 cut(s)	1256, 1632, 1633
AsuHPI	GGTGA	3 cut(s)	982, 1055, 1718
AvaI	CYCGRG	2 cut(s)	1232, 1631
AvaII	GGWCC	2 cut(s)	55, 1786
AxyI	CCTNAGG	1 cut(s)	1113
BalI	TGGCCA	1 cut(s)	423
BamHI	GGATCC	1 cut(s)	1906
BanI	GGYRCC	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	1230
BauI	CACGAG	1 cut(s)	891
BbsI	GAAGAC	1 cut(s)	1325
BbvCI	CCTCAGC	1 cut(s)	1422
BbvI	GCAGC	3 cut(s)	218, 364, 1577
BccI	CCATC	1 cut(s)	578
BcgI	CGANNNNNNTGC	2 cut(s)	1223, 1257
BciT130I	CCWGG	5 cut(s)	262, 528, 654, 1784, 1900
BclI	TGATCA	2 cut(s)	637, 733
BcnI	CCSGG	3 cut(s)	1256, 1632, 1633
BcoDI	GTCTC	5 cut(s)	106, 443, 778, 956, 1269
BfaI	CTAG	2 cut(s)	1218, 1440
BfmI	CTRYAG	1 cut(s)	1295
BfuAI	ACCTGC	1 cut(s)	1288
BglII	AGATCT	1 cut(s)	1769
BisI	GCNGC	4 cut(s)	118, 207, 353, 1566
BlsI	GCNGC	4 cut(s)	119, 208, 354, 1567
Bme1390I	CCNGG	8 cut(s)	262, 528, 654, 1256, 1632, 1633, 1784, 1900
Bme18I	GGWCC	2 cut(s)	55, 1786
BmeT110I	CYCGRG	2 cut(s)	1232, 1631
BmgT120I	GGNCC	3 cut(s)	55, 75, 1786
BmiI	GGNNCC	5 cut(s)	82, 343, 430, 1229, 1908
BmrFI	CCNGG	8 cut(s)	262, 528, 654, 1256, 1632, 1633, 1784, 1900
BmrI	ACTGGG	2 cut(s)	37, 316
BmsI	GCATC	7 cut(s)	266, 375, 753, 862, 1159, 1552, 1804
BmuI	ACTGGG	2 cut(s)	37, 316
BpiI	GAAGAC	1 cut(s)	1325
BpmI	CTGGAG	1 cut(s)	1472
Bpu10I	CCTNAGC	3 cut(s)	1422, 1505, 1841
BpuEI	CTTGAG	2 cut(s)	467, 496
BpuMI	CCSGG	3 cut(s)	1256, 1632, 1633
Bsa29I	ATCGAT	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	9 cut(s)	345, 424, 439, 595, 708, 749, 818, 1631, 1782
BsaWI	WCCGGW	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	1377, 1407
Bsc4I	CCNNNNNNNGG	8 cut(s)	64, 94, 267, 653, 1012, 1374, 1529, 1637
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	5 cut(s)	43, 129, 311, 1455, 1726
Bse21I	CCTNAGG	1 cut(s)	1113
Bse3DI	GCAATG	2 cut(s)	1106, 1800
BseBI	CCWGG	5 cut(s)	262, 528, 654, 1784, 1900
BseCI	ATCGAT	1 cut(s)	279
BseDI	CCNNGG	9 cut(s)	345, 424, 439, 595, 708, 749, 818, 1631, 1782
BseGI	GGATG	5 cut(s)	257, 640, 744, 1567, 1950
BseLI	CCNNNNNNNGG	8 cut(s)	64, 94, 267, 653, 1012, 1374, 1529, 1637
BseMI	GCAATG	2 cut(s)	1106, 1800
BseMII	CTCAG	4 cut(s)	158, 1104, 1343, 1413
BseNI	ACTGG	5 cut(s)	43, 129, 311, 1455, 1726
BseRI	GAGGAG	2 cut(s)	362, 1907
BseXI	GCAGC	3 cut(s)	218, 364, 1577
BsgI	GTGCAG	1 cut(s)	1401
Bsh1236I	CGCG	3 cut(s)	571, 1880, 1944
Bsh1285I	CGRYCG	2 cut(s)	109, 375
BshFI	GGCC	6 cut(s)	77, 117, 423, 526, 1857, 1898
BshNI	GGYRCC	1 cut(s)	341
BshVI	ATCGAT	1 cut(s)	279
BsiEI	CGRYCG	2 cut(s)	109, 375
BsiHKCI	CYCGRG	2 cut(s)	1232, 1631
BsiSI	CCGG	5 cut(s)	78, 137, 1186, 1256, 1632
BslI	CCNNNNNNNGG	8 cut(s)	64, 94, 267, 653, 1012, 1374, 1529, 1637
BsmAI	GTCTC	5 cut(s)	106, 443, 778, 956, 1269
BsmBI	CGTCTC	1 cut(s)	106
BsmI	GAATGC	1 cut(s)	1187
BsnI	GGCC	6 cut(s)	77, 117, 423, 526, 1857, 1898
Bso31I	GGTCTC	1 cut(s)	443
BsoBI	CYCGRG	2 cut(s)	1232, 1631
Bsp1286I	GDGCHC	1 cut(s)	1230
Bsp1407I	TGTACA	1 cut(s)	1262
Bsp19I	CCATGG	3 cut(s)	424, 595, 708
Bsp68I	TCGCGA	1 cut(s)	1944
BspACI	CCGC	7 cut(s)	85, 118, 223, 1020, 1133, 1538, 1789
BspANI	GGCC	6 cut(s)	77, 117, 423, 526, 1857, 1898
BspCNI	CTCAG	4 cut(s)	159, 1105, 1342, 1414
BspDI	ATCGAT	1 cut(s)	279
BspFNI	CGCG	3 cut(s)	571, 1880, 1944
BspLI	GGNNCC	5 cut(s)	82, 343, 430, 1229, 1908
BspMAI	CTGCAG	1 cut(s)	1299
BspMI	ACCTGC	1 cut(s)	1288
BspT107I	GGYRCC	1 cut(s)	341
BspTNI	GGTCTC	1 cut(s)	443
BsrDI	GCAATG	2 cut(s)	1106, 1800
BsrFI	RCCGGY	1 cut(s)	77
BsrGI	TGTACA	1 cut(s)	1262
BsrI	ACTGG	5 cut(s)	43, 129, 311, 1455, 1726
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	9 cut(s)	345, 424, 439, 595, 708, 749, 818, 1631, 1782
BssNI	GRCGYC	1 cut(s)	99
BssSI	CACGAG	1 cut(s)	891
BssT1I	CCWWGG	6 cut(s)	424, 439, 595, 708, 749, 818
Bst2BI	CACGAG	1 cut(s)	891
Bst2UI	CCWGG	5 cut(s)	262, 528, 654, 1784, 1900
Bst4CI	ACNGT	8 cut(s)	608, 664, 1324, 1338, 1389, 1653, 1868, 1924
Bst6I	CTCTTC	3 cut(s)	246, 654, 1521
BstACI	GRCGYC	1 cut(s)	99
BstAPI	GCANNNNNTGC	2 cut(s)	1130, 1571
BstAUI	TGTACA	1 cut(s)	1262
BstC8I	GCNNGC	5 cut(s)	79, 1014, 1089, 1126, 1380
BstDEI	CTNAG	9 cut(s)	167, 197, 725, 1113, 1329, 1422, 1505, 1766, 1841
BstDSI	CCRYGG	3 cut(s)	424, 595, 708
BstENI	CCTNNNNNAGG	1 cut(s)	651
BstF5I	GGATG	5 cut(s)	257, 640, 744, 1567, 1950
BstFNI	CGCG	3 cut(s)	571, 1880, 1944
BstHHI	GCGC	2 cut(s)	571, 744
BstMAI	GTCTC	5 cut(s)	106, 443, 778, 956, 1269
BstMCI	CGRYCG	2 cut(s)	109, 375
BstMWI	GCNNNNNNNGC	6 cut(s)	881, 1130, 1463, 1571, 1742, 1751
BstNI	CCWGG	5 cut(s)	262, 528, 654, 1784, 1900
BstNSI	RCATGY	2 cut(s)	1128, 1263
BstSCI	CCNGG	8 cut(s)	260, 526, 652, 1254, 1630, 1631, 1782, 1898
BstSFI	CTRYAG	1 cut(s)	1295
BstUI	CGCG	3 cut(s)	571, 1880, 1944
BstV1I	GCAGC	3 cut(s)	218, 364, 1577
BstV2I	GAAGAC	1 cut(s)	1325
BstX2I	RGATCY	4 cut(s)	298, 1659, 1769, 1906
BstYI	RGATCY	4 cut(s)	298, 1659, 1769, 1906
Bsu15I	ATCGAT	1 cut(s)	279
Bsu36I	CCTNAGG	1 cut(s)	1113
BsuRI	GGCC	6 cut(s)	77, 117, 423, 526, 1857, 1898
BsuTUI	ATCGAT	1 cut(s)	279
BtgI	CCRYGG	3 cut(s)	424, 595, 708
BtsCI	GGATG	5 cut(s)	257, 640, 744, 1567, 1950
BtsI	GCAGTG	3 cut(s)	453, 1128, 1228
BtsIMutI	CAGTG	8 cut(s)	136, 304, 453, 503, 1128, 1228, 1719, 1827
BtuMI	TCGCGA	1 cut(s)	1944
BveI	ACCTGC	1 cut(s)	1288
Cac8I	GCNNGC	5 cut(s)	79, 1014, 1089, 1126, 1380
CaiI	CAGNNNCTG	1 cut(s)	1163
CfoI	GCGC	2 cut(s)	571, 744
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	3 cut(s)	55, 75, 1786
Cfr9I	CCCGGG	1 cut(s)	1631
ClaI	ATCGAT	1 cut(s)	279
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	4 cut(s)	342, 1263, 1876, 1948
CspCI	CAANNNNNGTGG	2 cut(s)	344, 379
CviAII	CATG	9 cut(s)	212, 425, 596, 709, 737, 1121, 1125, 1205, 1260
CviQI	GTAC	4 cut(s)	342, 1263, 1876, 1948
DdeI	CTNAG	9 cut(s)	167, 197, 725, 1113, 1329, 1422, 1505, 1766, 1841
DraI	TTTAAA	2 cut(s)	187, 1140
DrdI	GACNNNNNNGTC	1 cut(s)	719
DseDI	GACNNNNNNGTC	1 cut(s)	719
EaeI	YGGCCR	3 cut(s)	115, 421, 1855
Eam1104I	CTCTTC	3 cut(s)	246, 654, 1521
EarI	CTCTTC	3 cut(s)	246, 654, 1521
EciI	GGCGGA	2 cut(s)	1009, 1778
Eco130I	CCWWGG	6 cut(s)	424, 439, 595, 708, 749, 818
Eco147I	AGGCCT	1 cut(s)	1898
Eco24I	GRGCYC	1 cut(s)	1230
Eco31I	GGTCTC	1 cut(s)	443
Eco32I	GATATC	1 cut(s)	673
Eco47I	GGWCC	2 cut(s)	55, 1786
Eco57I	CTGAAG	3 cut(s)	267, 1140, 1985
Eco81I	CCTNAGG	1 cut(s)	1113
Eco88I	CYCGRG	2 cut(s)	1232, 1631
EcoNI	CCTNNNNNAGG	1 cut(s)	651
EcoRII	CCWGG	5 cut(s)	260, 526, 652, 1782, 1898
EcoRV	GATATC	1 cut(s)	673
EcoT14I	CCWWGG	6 cut(s)	424, 439, 595, 708, 749, 818
EcoT22I	ATGCAT	2 cut(s)	1126, 1819
EcoT38I	GRGCYC	1 cut(s)	1230
ErhI	CCWWGG	6 cut(s)	424, 439, 595, 708, 749, 818
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	9 cut(s)	215, 428, 599, 712, 740, 1124, 1128, 1208, 1263
FalI	AAGNNNNNCTT	2 cut(s)	1734, 1766
FatI	CATG	9 cut(s)	211, 424, 595, 708, 736, 1120, 1124, 1204, 1259
FauI	CCCGC	2 cut(s)	92, 1126
FauNDI	CATATG	1 cut(s)	1267
FbaI	TGATCA	2 cut(s)	637, 733
FblI	GTMKAC	2 cut(s)	931, 997
Fnu4HI	GCNGC	4 cut(s)	118, 207, 353, 1566
FokI	GGATG	5 cut(s)	244, 647, 731, 1574, 1937
FriOI	GRGCYC	1 cut(s)	1230
Fsp4HI	GCNGC	4 cut(s)	118, 207, 353, 1566
FspAI	RTGCGCAY	1 cut(s)	743
FspBI	CTAG	2 cut(s)	1218, 1440
FspI	TGCGCA	1 cut(s)	743
GlaI	GCGC	2 cut(s)	570, 743
GluI	GCNGC	4 cut(s)	118, 207, 353, 1566
GsuI	CTGGAG	1 cut(s)	1472
HaeIII	GGCC	6 cut(s)	77, 117, 423, 526, 1857, 1898
HapII	CCGG	5 cut(s)	78, 137, 1186, 1256, 1632
HgaI	GACGC	1 cut(s)	560
HhaI	GCGC	2 cut(s)	571, 744
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	9 cut(s)	215, 428, 599, 712, 740, 1124, 1128, 1208, 1263
Hin6I	GCGC	2 cut(s)	569, 742
HinP1I	GCGC	2 cut(s)	569, 742
HincII	GTYRAC	1 cut(s)	932
HindII	GTYRAC	1 cut(s)	932
HindIII	AAGCTT	1 cut(s)	1743
HinfI	GANTC	3 cut(s)	550, 771, 985
HpaII	CCGG	5 cut(s)	78, 137, 1186, 1256, 1632
HphI	GGTGA	3 cut(s)	982, 1055, 1718
Hpy166II	GTNNAC	6 cut(s)	55, 604, 932, 998, 1693, 1876
Hpy188I	TCNGA	8 cut(s)	106, 627, 677, 1034, 1314, 1416, 1914, 1979
Hpy188III	TCNNGA	6 cut(s)	26, 217, 590, 891, 1523, 1943
Hpy8I	GTNNAC	6 cut(s)	55, 604, 932, 998, 1693, 1876
Hpy99I	CGWCG	2 cut(s)	128, 933
HpyAV	CCTTC	8 cut(s)	58, 142, 169, 297, 785, 1265, 1630, 1897
HpyCH4III	ACNGT	8 cut(s)	608, 664, 1324, 1338, 1389, 1653, 1868, 1924
HpyCH4IV	ACGT	4 cut(s)	99, 813, 1071, 1671
HpyF10VI	GCNNNNNNNGC	6 cut(s)	881, 1130, 1463, 1571, 1742, 1751
HpyF3I	CTNAG	9 cut(s)	167, 197, 725, 1113, 1329, 1422, 1505, 1766, 1841
HpySE526I	ACGT	4 cut(s)	99, 813, 1071, 1671
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	9 cut(s)	215, 428, 599, 712, 740, 1124, 1128, 1208, 1263
HspAI	GCGC	2 cut(s)	569, 742
KpnI	GGTACC	1 cut(s)	345
KroI	GCCGGC	1 cut(s)	77
KroNI	GCCGGC	1 cut(s)	79
Ksp22I	TGATCA	2 cut(s)	637, 733
LmnI	GCTCC	8 cut(s)	33, 86, 349, 434, 627, 1233, 1398, 1980
Lsp1109I	GCAGC	3 cut(s)	218, 364, 1577
LweI	GCATC	7 cut(s)	266, 375, 753, 862, 1159, 1552, 1804
MaeI	CTAG	2 cut(s)	1218, 1440
MaeII	ACGT	4 cut(s)	99, 813, 1071, 1671
MaeIII	GTNAC	5 cut(s)	658, 781, 888, 1072, 1667
MboII	GAAGA	7 cut(s)	260, 263, 293, 641, 1190, 1330, 1538
MfeI	CAATTG	2 cut(s)	861, 1583
MflI	RGATCY	4 cut(s)	298, 1659, 1769, 1906
MhlI	GDGCHC	1 cut(s)	1230
MlsI	TGGCCA	1 cut(s)	423
MluNI	TGGCCA	1 cut(s)	423
MlyI	GAGTC	3 cut(s)	544, 780, 979
MmeI	TCCRAC	5 cut(s)	643, 646, 834, 1336, 1978
Mox20I	TGGCCA	1 cut(s)	423
Mph1103I	ATGCAT	2 cut(s)	1126, 1819
MroNI	GCCGGC	1 cut(s)	77
MroXI	GAANNNNTTC	3 cut(s)	544, 608, 1363
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	8 cut(s)	144, 186, 237, 266, 330, 492, 1139, 1821
MslI	CAYNNNNRTG	2 cut(s)	1704, 1925
Msp20I	TGGCCA	1 cut(s)	423
MspI	CCGG	5 cut(s)	78, 137, 1186, 1256, 1632
MspR9I	CCNGG	8 cut(s)	262, 528, 654, 1256, 1632, 1633, 1784, 1900
MunI	CAATTG	2 cut(s)	861, 1583
Mva1269I	GAATGC	1 cut(s)	1187
MvaI	CCWGG	5 cut(s)	262, 528, 654, 1784, 1900
MvnI	CGCG	3 cut(s)	571, 1880, 1944
MwoI	GCNNNNNNNGC	6 cut(s)	881, 1130, 1463, 1571, 1742, 1751
NaeI	GCCGGC	1 cut(s)	79
NciI	CCSGG	3 cut(s)	1256, 1632, 1633
NcoI	CCATGG	3 cut(s)	424, 595, 708
NdeI	CATATG	1 cut(s)	1267
NgoMIV	GCCGGC	1 cut(s)	77
NlaIII	CATG	9 cut(s)	215, 428, 599, 712, 740, 1124, 1128, 1208, 1263
NlaIV	GGNNCC	5 cut(s)	82, 343, 430, 1229, 1908
NmuCI	GTSAC	1 cut(s)	888
NruI	TCGCGA	1 cut(s)	1944
NsbI	TGCGCA	1 cut(s)	743
NsiI	ATGCAT	2 cut(s)	1126, 1819
NspI	RCATGY	2 cut(s)	1128, 1263
OliI	CACNNNNGTG	1 cut(s)	1925
PaeI	GCATGC	1 cut(s)	1128
PceI	AGGCCT	1 cut(s)	1898
PcsI	WCGNNNNNNNCGW	2 cut(s)	96, 612
PctI	GAATGC	1 cut(s)	1187
PdiI	GCCGGC	1 cut(s)	79
PdmI	GAANNNNTTC	3 cut(s)	544, 608, 1363
PflMI	CCANNNNNTGG	1 cut(s)	94
PkrI	GCNGC	4 cut(s)	119, 208, 354, 1567
Ple19I	CGATCG	2 cut(s)	109, 375
PleI	GAGTC	3 cut(s)	544, 779, 979
PpsI	GAGTC	3 cut(s)	544, 779, 979
PshBI	ATTAAT	1 cut(s)	492
Psp1406I	AACGTT	1 cut(s)	813
Psp6I	CCWGG	5 cut(s)	260, 526, 652, 1782, 1898
PspGI	CCWGG	5 cut(s)	260, 526, 652, 1782, 1898
PspN4I	GGNNCC	5 cut(s)	82, 343, 430, 1229, 1908
PspPI	GGNCC	3 cut(s)	55, 75, 1786
PstI	CTGCAG	1 cut(s)	1299
PstNI	CAGNNNCTG	1 cut(s)	1163
PsuI	RGATCY	4 cut(s)	298, 1659, 1769, 1906
PvuI	CGATCG	2 cut(s)	109, 375
RruI	TCGCGA	1 cut(s)	1944
RsaI	GTAC	4 cut(s)	343, 1264, 1877, 1949
RsaNI	GTAC	4 cut(s)	342, 1263, 1876, 1948
RseI	CAYNNNNRTG	2 cut(s)	1704, 1925
SalI	GTCGAC	1 cut(s)	930
SaqAI	TTAA	8 cut(s)	144, 186, 237, 266, 330, 492, 1139, 1821
SatI	GCNGC	4 cut(s)	118, 207, 353, 1566
Sau96I	GGNCC	3 cut(s)	55, 75, 1786
SchI	GAGTC	3 cut(s)	544, 780, 979
ScrFI	CCNGG	8 cut(s)	262, 528, 654, 1256, 1632, 1633, 1784, 1900
SduI	GDGCHC	1 cut(s)	1230
SfaNI	GCATC	7 cut(s)	266, 375, 753, 862, 1159, 1552, 1804
SfcI	CTRYAG	1 cut(s)	1295
SinI	GGWCC	2 cut(s)	55, 1786
SmaI	CCCGGG	1 cut(s)	1633
SmiMI	CAYNNNNRTG	2 cut(s)	1704, 1925
SmlI	CTYRAG	2 cut(s)	446, 511
SmoI	CTYRAG	2 cut(s)	446, 511
SphI	GCATGC	1 cut(s)	1128
SseBI	AGGCCT	1 cut(s)	1898
SsiI	CCGC	7 cut(s)	85, 118, 223, 1020, 1133, 1538, 1789
SspI	AATATT	1 cut(s)	1282
SspMI	CTAG	2 cut(s)	1218, 1440
StuI	AGGCCT	1 cut(s)	1898
StyD4I	CCNGG	8 cut(s)	260, 526, 652, 1254, 1630, 1631, 1782, 1898
StyI	CCWWGG	6 cut(s)	424, 439, 595, 708, 749, 818
TaaI	ACNGT	8 cut(s)	608, 664, 1324, 1338, 1389, 1653, 1868, 1924
TaiI	ACGT	4 cut(s)	102, 816, 1074, 1674
TaqI	TCGA	7 cut(s)	27, 48, 109, 279, 548, 853, 931
TatI	WGTACW	2 cut(s)	1262, 1947
TauI	GCSGC	1 cut(s)	120
Tru1I	TTAA	8 cut(s)	144, 186, 237, 266, 330, 492, 1139, 1821
Tru9I	TTAA	8 cut(s)	144, 186, 237, 266, 330, 492, 1139, 1821
TscAI	CASTG	8 cut(s)	136, 311, 460, 510, 1135, 1228, 1726, 1834
TseFI	GTSAC	1 cut(s)	888
TseI	GCWGC	3 cut(s)	206, 352, 1565
Tsp45I	GTSAC	1 cut(s)	888
TspDTI	ATGAA	7 cut(s)	77, 279, 601, 695, 1284, 1331, 1594
TspGWI	ACGGA	1 cut(s)	1082
TspMI	CCCGGG	1 cut(s)	1631
TspRI	CASTG	8 cut(s)	136, 311, 460, 510, 1135, 1228, 1726, 1834
Van91I	CCANNNNNTGG	1 cut(s)	94
VpaK11BI	GGWCC	2 cut(s)	55, 1786
VspI	ATTAAT	1 cut(s)	492
XagI	CCTNNNNNAGG	1 cut(s)	651
XapI	RAATTY	1 cut(s)	683
XceI	RCATGY	2 cut(s)	1128, 1263
XmaI	CCCGGG	1 cut(s)	1631
XmiI	GTMKAC	2 cut(s)	931, 997
XmnI	GAANNNNTTC	3 cut(s)	544, 608, 1363
XspI	CTAG	2 cut(s)	1218, 1440
ZraI	GACGTC	1 cut(s)	100
Zsp2I	ATGCAT	2 cut(s)	1126, 1819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.