pycom04g06170

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
6126042 .. 6128754
2713 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 732 bp
ATGATAAGGTACGTTAACCAAATGGGTTTTTATTATTTAATGCTACGCATGGTCATGGGAGAAATTTTTATTGTCACCGAAATACAGGAGGTACACCACGAGGGATGGCTGAATAATAAAGAGGAGAAGGAACAGTTTAGTCCAGTGTCCGTACTGGATTGTCCATTTGAAGACGAAGATGATGACCATGCTCTCTCACCCTTCAGTCGTAGCCTTGCATGCATGCAAGGTAATCAACAAAAACTTATGAGAAATATCAGACGGATCGAAAACCTAGCTCAACTGGAAGTGGACTTAGAGCAACGAATGAAAGCGATAATGGATTCAGAGGCTGAAGCCGAAGCACCCGCATCACTCATGCATACTGCAAATTGGCATGCAGAGCAAGTTAACAAGACGGAAGAAAAAACATCAGATAAACGGGTGAGCTTGAAGGCAGAAAAGGTAGTGATGTATTTGTGCAGGGAGACAATCGTTGAGAAAAACAGTGACGAAAGCGGGGTGATGCGAGAGGCGGTGAAGGCGGTGGAGGATTGGATAAATGGTGAGTCACAGGAGTTGCAGTTGGGATGGGAGGTGGAAGAAGGAAGAAAAGTGTATGTCAAAGATATGGAAAATGAGTGGGGGAGTTGTAGAGAGTTGGATTGTGAAAGACAGGAGGTGGGTTTGGAGTTGGAGGCTGAGGTTTGGAATTGTTTGCTTAAAGAATTGTTACTTGATTTGGTTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

244

Amino Acids

28.35

Weight (kDa)

4.58

Isoelectric Point (pI)

55.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11780 AT4G23020 AT4G23020
fragaria_vesca FvH4_5g01430
malus_domestica MD04G1068300.v1.1
prunus_persica Prupe.5G089800_v2.0.a1
pyrus_communis pycom04g06170
rosa_chinensis RchiOBHm_Chr7g0199421
rosa_laevigata RLG00000003794
rosa_multiflora Rmu_sc0003890.1_g000015
rosa_roxburghii Rroxscaffold_3G00256740
rosa_rugosa Rorug07G0053800
rosa_samantha Rh7AG178900 Rh7BG182300 Rh7CG187500 Rh7DG181800
rosa_wichuraiana Rw7G015710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 348, 498, 515, 524
AclWI GGATC 1 cut(s) 272
AcsI RAATTY 1 cut(s) 63
AcuI CTGAAG 2 cut(s) 187, 354
AfaI GTAC 3 cut(s) 11, 93, 153
AgsI TTSAA 2 cut(s) 170, 433
AluBI AGCT 2 cut(s) 278, 429
AluI AGCT 2 cut(s) 278, 429
Alw26I GTCTC 1 cut(s) 461
AlwI GGATC 1 cut(s) 272
AlwNI CAGNNNCTG 1 cut(s) 332
ApoI RAATTY 1 cut(s) 63
AsuHPI GGTGA 6 cut(s) 67, 189, 436, 514, 529, 557
BauI CACGAG 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 177
BbvCI CCTCAGC 1 cut(s) 681
BccI CCATC 2 cut(s) 99, 564
BcoDI GTCTC 1 cut(s) 461
BfaI CTAG 2 cut(s) 275, 730
BmsI GCATC 2 cut(s) 359, 495
BpiI GAAGAC 1 cut(s) 177
Bpu10I CCTNAGC 1 cut(s) 681
BsaXI ACNNNNNCTCC 2 cut(s) 548, 578
Bse1I ACTGG 3 cut(s) 143, 159, 288
BseGI GGATG 2 cut(s) 110, 575
BseMII CTCAG 1 cut(s) 672
BseNI ACTGG 3 cut(s) 143, 159, 288
BseRI GAGGAG 1 cut(s) 137
BsgI GTGCAG 1 cut(s) 481
BsmAI GTCTC 1 cut(s) 461
Bsp143I GATC 1 cut(s) 264
BspACI CCGC 4 cut(s) 348, 498, 515, 524
BspCNI CTCAG 1 cut(s) 673
BspPI GGATC 1 cut(s) 272
BsrI ACTGG 3 cut(s) 143, 159, 288
BssMI GATC 1 cut(s) 264
BssSI CACGAG 1 cut(s) 98
Bst2BI CACGAG 1 cut(s) 98
Bst4CI ACNGT 2 cut(s) 135, 488
BstC8I GCNNGC 3 cut(s) 220, 224, 378
BstDEI CTNAG 2 cut(s) 295, 681
BstF5I GGATG 2 cut(s) 110, 575
BstKTI GATC 1 cut(s) 267
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 1 cut(s) 264
BstMWI GCNNNNNNNGC 3 cut(s) 219, 382, 521
BstNSI RCATGY 3 cut(s) 222, 226, 380
BstV2I GAAGAC 1 cut(s) 177
BtsCI GGATG 2 cut(s) 110, 575
BtsIMutI CAGTG 2 cut(s) 150, 493
Cac8I GCNNGC 3 cut(s) 220, 224, 378
CaiI CAGNNNCTG 1 cut(s) 332
Csp6I GTAC 3 cut(s) 10, 92, 152
CviAII CATG 7 cut(s) 49, 55, 188, 219, 223, 358, 377
CviJI RGCY 7 cut(s) 109, 213, 278, 332, 338, 429, 680
CviKI_1 RGCY 7 cut(s) 109, 213, 278, 332, 338, 429, 680
CviQI GTAC 3 cut(s) 10, 92, 152
DdeI CTNAG 2 cut(s) 295, 681
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
Eco57I CTGAAG 2 cut(s) 187, 354
EcoT22I ATGCAT 2 cut(s) 224, 363
FaeI CATG 7 cut(s) 52, 58, 191, 222, 226, 361, 380
FatI CATG 7 cut(s) 48, 54, 187, 218, 222, 357, 376
FauI CCCGC 2 cut(s) 355, 491
FokI GGATG 2 cut(s) 117, 582
FspBI CTAG 2 cut(s) 275, 730
Hin1II CATG 7 cut(s) 52, 58, 191, 222, 226, 361, 380
HincII GTYRAC 2 cut(s) 16, 391
HindII GTYRAC 2 cut(s) 16, 391
HinfI GANTC 2 cut(s) 323, 548
HpaI GTTAAC 2 cut(s) 16, 391
HphI GGTGA 6 cut(s) 67, 189, 436, 514, 529, 557
Hpy166II GTNNAC 4 cut(s) 16, 94, 292, 391
Hpy188I TCNGA 3 cut(s) 260, 328, 415
Hpy8I GTNNAC 4 cut(s) 16, 94, 292, 391
HpyAV CCTTC 5 cut(s) 121, 211, 427, 514, 578
HpyCH4III ACNGT 2 cut(s) 135, 488
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 8 cut(s) 218, 222, 226, 361, 368, 380, 462, 562
HpyF10VI GCNNNNNNNGC 3 cut(s) 219, 382, 521
HpyF3I CTNAG 2 cut(s) 295, 681
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 7 cut(s) 52, 58, 191, 222, 226, 361, 380
KspAI GTTAAC 2 cut(s) 16, 391
Kzo9I GATC 1 cut(s) 264
LpnPI CCDG 7 cut(s) 71, 140, 156, 269, 448, 539, 641
LweI GCATC 2 cut(s) 359, 495
MaeI CTAG 2 cut(s) 275, 730
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 4 cut(s) 73, 488, 549, 711
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MboII GAAGA 5 cut(s) 182, 188, 413, 593, 600
MluCI AATT 4 cut(s) 63, 370, 691, 707
MlyI GAGTC 1 cut(s) 557
MmeI TCCRAC 2 cut(s) 621, 654
Mph1103I ATGCAT 2 cut(s) 224, 363
MseI TTAA 4 cut(s) 15, 38, 390, 702
MslI CAYNNNNRTG 1 cut(s) 53
MwoI GCNNNNNNNGC 3 cut(s) 219, 382, 521
NdeII GATC 1 cut(s) 264
NlaIII CATG 7 cut(s) 52, 58, 191, 222, 226, 361, 380
NmuCI GTSAC 3 cut(s) 73, 488, 549
NsiI ATGCAT 2 cut(s) 224, 363
NspI RCATGY 3 cut(s) 222, 226, 380
PaeI GCATGC 3 cut(s) 222, 226, 380
PfeI GAWTC 1 cut(s) 323
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
PstNI CAGNNNCTG 1 cut(s) 332
RsaI GTAC 3 cut(s) 11, 93, 153
RsaNI GTAC 3 cut(s) 10, 92, 152
RseI CAYNNNNRTG 1 cut(s) 53
SaqAI TTAA 4 cut(s) 15, 38, 390, 702
Sau3AI GATC 1 cut(s) 264
SchI GAGTC 1 cut(s) 557
SfaNI GCATC 2 cut(s) 359, 495
SmiMI CAYNNNNRTG 1 cut(s) 53
SphI GCATGC 3 cut(s) 222, 226, 380
Sse9I AATT 4 cut(s) 63, 370, 691, 707
SsiI CCGC 4 cut(s) 348, 498, 515, 524
SspMI CTAG 2 cut(s) 275, 730
TaaI ACNGT 2 cut(s) 135, 488
TaiI ACGT 1 cut(s) 15
TaqI TCGA 1 cut(s) 267
TasI AATT 4 cut(s) 63, 370, 691, 707
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 4 cut(s) 15, 38, 390, 702
Tru9I TTAA 4 cut(s) 15, 38, 390, 702
TscAI CASTG 2 cut(s) 150, 493
TseFI GTSAC 3 cut(s) 73, 488, 549
Tsp45I GTSAC 3 cut(s) 73, 488, 549
TspDTI ATGAA 1 cut(s) 323
TspGWI ACGGA 3 cut(s) 139, 277, 413
TspRI CASTG 2 cut(s) 150, 493
XapI RAATTY 1 cut(s) 63
XceI RCATGY 3 cut(s) 222, 226, 380
XspI CTAG 2 cut(s) 275, 730
Zsp2I ATGCAT 2 cut(s) 224, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.