Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001216

Physical Location & Seq

Genomic Coordinates Forward (+)

6211118 .. 6213147

Gene Structure 2030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g06270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGCAGGCATCAGCAGCTTTTGTTAGTGCTAGTGCCCTTGGAATGGCATGCGGTCCTGCTCTTGCTGGCTTACTTCAAACTAATTTCAAGATTTACAAGCTTACATTCAATCAAGACACTTTGCCTGGTTGGGTTATGGCTATAGCTTGGCTACTATACTTGATATGGCTGTGCATCTCATTCAAAGAACCTGCTCGTGAAGATGAAGTGAATCCTGTACAAGAGGGATCTAATAGCGGAACAGCAGTAAATGATGCGCTCGAGAAAGGTCTTCAACAACCATTGCTCATTAGTGCTGAAGACAAGAATGAAGATGAAGATGGTGACCAAGATATTGATGAAAGTGAAGAAGCTCCAGAGGAATCTCGTCAACCAGCCACTTCAATTCGATCCGCGTATCGACTACTTACACCCTCTGTAAAGGTTCAACTGTTGATATATTTCATGCTCAAGTATGCTATGGAGATTTTACTTTCAGAATCTAGTGTTGTTACCACGTACTACTTTAGCTGGAATACTAGCAAAGTCGCAATTTTTCTGGCATGTCTTGGATTAACCGTTCTTCCAGTAAATATTCTTGTTGGGAGCTACATCAGCAACATGTTTGAAGACAGGCAAATTTTACTAGCATCCGAAATAGTGGTTTGCATAGGCATAGTTATGAGCTTCCATATGTTTAATCCCTACTCGGTGATACAATACGTCAGCTCAGGGCTCATCATGTTTGTTTCGGCTGAAGTACTTGAAGGTGTCAACTTGTCGCTTCTCTCTAGGGTCATGTCATCGAGGCTTTCCCGCGGAACATACAATGGTGGATTACTTTCAACAGAAGCTGGGACACTCGCTCGAGTAGTAGCAGATGCCACCATAACTCTAGCCGGATACTTGGGGGAGAGTAGGCTCTTGAACATCACCTTGCTTCCTTCCCTCGTGATCTGCATTACTTCCATTATTGCCACCTGCTACACGTACAACTCTCTCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0008150 GO:0009705 GO:0015698 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 SPX

Protein Analysis

329

Amino Acids

35.87

Weight (kDa)

4.49

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63010 AT1G63010 AT1G63010 AT1G63010 AT1G63010 AT1G63010 AT1G63010 AT4G11810 AT4G11810 AT4G11810 AT4G22990 AT4G22990 AT4G22990
fragaria_vesca	FvH4_5g01390 FvH4_7g12920 FvH4_7g12920 FvH4_7g12920
malus_domestica	MD02G1195400.v1.1 MD04G1068900.v1.1 MD06G1069900.v1.1
prunus_persica	Prupe.2G153100_v2.0.a1 Prupe.2G153100_v2.0.a1 Prupe.2G153100_v2.0.a1 Prupe.5G089200_v2.0.a1 Prupe.5G089200_v2.0.a1 Prupe.5G089200_v2.0.a1 Prupe.5G089200_v2.0.a1 Prupe.5G089200_v2.0.a1
pyrus_communis	pycom02g15930 pycom04g06270 pycom06g07090
rosa_chinensis	RchiOBHm_Chr1g0352001 RchiOBHm_Chr7g0199491
rosa_laevigata	RLG00000003789 RLG00000028368
rosa_multiflora	Rmu_sc0003549.1_g000001 Rmu_sc0004009.1_g000006 Rmu_sc0007728.1_g000012
rosa_roxburghii	Rroxscaffold_3G00256680 Rroxscaffold_4G00303360
rosa_rugosa	Rorug01G0223300 Rorug01G0223400 Rorug07G0054600 Rorug07G0054700 Rorug07G0054800 Rorug07G0054900
rosa_samantha	Rh1AG237400 Rh1BG207600 Rh1CG221800 Rh1DG234600 Rh7AG179600 Rh7BG182900 Rh7CG188200 Rh7DG182300
rosa_wichuraiana	Rw1G020650 Rw7G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	968
Acc36I	ACCTGC	2 cut(s)	199, 968
AccII	CGCG	2 cut(s)	395, 798
AciI	CCGC	5 cut(s)	51, 237, 393, 796, 798
AclWI	GGATC	2 cut(s)	235, 384
AcsI	RAATTY	1 cut(s)	618
AcuI	CTGAAG	2 cut(s)	318, 756
AfaI	GTAC	4 cut(s)	219, 500, 741, 971
AfiI	CCNNNNNNNGG	1 cut(s)	43
AflIII	ACRYGT	2 cut(s)	600, 966
AjnI	CCWGG	1 cut(s)	124
AloI	GAACNNNNNNTCC	2 cut(s)	543, 575
AluBI	AGCT	9 cut(s)	17, 100, 146, 353, 510, 588, 666, 708, 833
AluI	AGCT	9 cut(s)	17, 100, 146, 353, 510, 588, 666, 708, 833
AlwI	GGATC	2 cut(s)	235, 384
AlwNI	CAGNNNCTG	1 cut(s)	833
Ama87I	CYCGRG	2 cut(s)	260, 846
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	618
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	3 cut(s)	335, 703, 904
AvaI	CYCGRG	2 cut(s)	260, 846
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	717
BauI	CACGAG	2 cut(s)	195, 929
BbsI	GAAGAC	3 cut(s)	263, 306, 615
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	314
BciT130I	CCWGG	1 cut(s)	126
BciVI	GTATCC	1 cut(s)	875
BfaI	CTAG	6 cut(s)	30, 483, 519, 626, 771, 875
BfmI	CTRYAG	1 cut(s)	141
BfuAI	ACCTGC	2 cut(s)	199, 968
BfuI	GTATCC	1 cut(s)	875
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmcAI	AGTACT	1 cut(s)	741
Bme1390I	CCNGG	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	2 cut(s)	260, 846
BmgT120I	GGNCC	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	5 cut(s)	17, 183, 244, 638, 850
BpiI	GAAGAC	3 cut(s)	263, 306, 615
BpmI	CTGGAG	1 cut(s)	339
Bpu10I	CCTNAGC	1 cut(s)	709
BpuEI	CTTGAG	1 cut(s)	434
BsaAI	YACGTR	2 cut(s)	498, 969
BsaJI	CCNNGG	2 cut(s)	37, 796
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	566
Bse3DI	GCAATG	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	37, 796
BseGI	GGATG	1 cut(s)	629
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMI	GCAATG	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	723
BseNI	ACTGG	1 cut(s)	566
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	26
BseYI	CCCAGC	1 cut(s)	833
Bsh1236I	CGCG	2 cut(s)	395, 798
BsiHKCI	CYCGRG	2 cut(s)	260, 846
BsiSI	CCGG	1 cut(s)	879
BslFI	GGGAC	1 cut(s)	850
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	850
BsoBI	CYCGRG	2 cut(s)	260, 846
Bsp1286I	GDGCHC	2 cut(s)	37, 717
Bsp1407I	TGTACA	1 cut(s)	217
Bsp143I	GATC	3 cut(s)	227, 389, 933
BspACI	CCGC	5 cut(s)	51, 237, 393, 796, 798
BspCNI	CTCAG	1 cut(s)	722
BspFNI	CGCG	2 cut(s)	395, 798
BspMI	ACCTGC	2 cut(s)	199, 968
BspPI	GGATC	2 cut(s)	235, 384
BsrDI	GCAATG	1 cut(s)	281
BsrGI	TGTACA	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	566
BssECI	CCNNGG	2 cut(s)	37, 796
BssMI	GATC	3 cut(s)	227, 389, 933
BssSI	CACGAG	2 cut(s)	195, 929
BssT1I	CCWWGG	1 cut(s)	37
Bst2BI	CACGAG	2 cut(s)	195, 929
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	2 cut(s)	432, 559
BstAUI	TGTACA	1 cut(s)	217
BstBAI	YACGTR	2 cut(s)	498, 969
BstC8I	GCNNGC	3 cut(s)	6, 49, 67
BstDEI	CTNAG	1 cut(s)	709
BstDSI	CCRYGG	1 cut(s)	796
BstEII	GGTNACC	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	629
BstFNI	CGCG	2 cut(s)	395, 798
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	3 cut(s)	230, 392, 936
BstMBI	GATC	3 cut(s)	227, 389, 933
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 594
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	3 cut(s)	51, 546, 604
BstPI	GGTNACC	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	124
BstSFI	CTRYAG	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	37
BstUI	CGCG	2 cut(s)	395, 798
BstV1I	GCAGC	1 cut(s)	26
BstV2I	GAAGAC	3 cut(s)	263, 306, 615
BstX2I	RGATCY	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	227
BsuI	GTATCC	1 cut(s)	875
BtgI	CCRYGG	1 cut(s)	796
BtsCI	GGATG	1 cut(s)	629
BveI	ACCTGC	2 cut(s)	199, 968
Cac8I	GCNNGC	3 cut(s)	6, 49, 67
CaiI	CAGNNNCTG	1 cut(s)	833
CfoI	GCGC	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	53
Cfr42I	CCGCGG	1 cut(s)	799
Csp6I	GTAC	4 cut(s)	218, 499, 740, 970
CviAII	CATG	6 cut(s)	48, 445, 543, 601, 721, 778
CviQI	GTAC	4 cut(s)	218, 499, 740, 970
DdeI	CTNAG	1 cut(s)	709
DpnI	GATC	3 cut(s)	229, 391, 935
DpnII	GATC	3 cut(s)	227, 389, 933
Eco130I	CCWWGG	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	717
Eco47I	GGWCC	1 cut(s)	53
Eco57I	CTGAAG	2 cut(s)	318, 756
Eco88I	CYCGRG	2 cut(s)	260, 846
Eco91I	GGTNACC	1 cut(s)	323
EcoO65I	GGTNACC	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	717
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	6 cut(s)	51, 448, 546, 604, 724, 781
FaqI	GGGAC	1 cut(s)	850
FatI	CATG	6 cut(s)	47, 444, 542, 600, 720, 777
FauI	CCCGC	1 cut(s)	803
FauNDI	CATATG	1 cut(s)	672
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	1 cut(s)	616
FriOI	GRGCYC	1 cut(s)	717
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	6 cut(s)	30, 483, 519, 626, 771, 875
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	1 cut(s)	15
GsaI	CCCAGC	1 cut(s)	837
GsuI	CTGGAG	1 cut(s)	339
HapII	CCGG	1 cut(s)	879
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	6 cut(s)	51, 448, 546, 604, 724, 781
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HincII	GTYRAC	2 cut(s)	371, 754
HindII	GTYRAC	2 cut(s)	371, 754
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	3 cut(s)	211, 362, 479
HpaII	CCGG	1 cut(s)	879
HphI	GGTGA	3 cut(s)	335, 703, 904
Hpy166II	GTNNAC	2 cut(s)	371, 754
Hpy188I	TCNGA	2 cut(s)	478, 634
Hpy188III	TCNNGA	7 cut(s)	88, 113, 197, 262, 356, 904, 931
Hpy8I	GTNNAC	2 cut(s)	371, 754
HpyAV	CCTTC	2 cut(s)	740, 933
HpyCH4III	ACNGT	2 cut(s)	432, 559
HpyCH4IV	ACGT	3 cut(s)	497, 702, 968
HpyCH4V	TGCA	4 cut(s)	4, 174, 648, 939
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 594
HpyF3I	CTNAG	1 cut(s)	709
HpySE526I	ACGT	3 cut(s)	497, 702, 968
Hsp92II	CATG	6 cut(s)	51, 448, 546, 604, 724, 781
HspAI	GCGC	1 cut(s)	257
KspI	CCGCGG	1 cut(s)	799
Kzo9I	GATC	3 cut(s)	227, 389, 933
LmnI	GCTCC	2 cut(s)	358, 585
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	5 cut(s)	17, 183, 244, 638, 850
MaeI	CTAG	6 cut(s)	30, 483, 519, 626, 771, 875
MaeII	ACGT	3 cut(s)	497, 702, 968
MaeIII	GTNAC	2 cut(s)	323, 490
MalI	GATC	3 cut(s)	229, 391, 935
MboI	GATC	3 cut(s)	227, 389, 933
MboII	GAAGA	8 cut(s)	212, 263, 311, 323, 329, 359, 554, 620
MflI	RGATCY	1 cut(s)	227
MhlI	GDGCHC	2 cut(s)	37, 717
MluCI	AATT	4 cut(s)	82, 384, 531, 618
MnlI	CCTC	5 cut(s)	217, 352, 424, 780, 938
MseI	TTAA	2 cut(s)	554, 678
MslI	CAYNNNNRTG	1 cut(s)	659
MspA1I	CMGCKG	1 cut(s)	798
MspI	CCGG	1 cut(s)	879
MspR9I	CCNGG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	126
MvnI	CGCG	2 cut(s)	395, 798
MwoI	GCNNNNNNNGC	2 cut(s)	14, 594
NdeI	CATATG	1 cut(s)	672
NdeII	GATC	3 cut(s)	227, 389, 933
NlaIII	CATG	6 cut(s)	51, 448, 546, 604, 724, 781
NmuCI	GTSAC	1 cut(s)	323
NspI	RCATGY	3 cut(s)	51, 546, 604
PaeI	GCATGC	1 cut(s)	51
PaeR7I	CTCGAG	2 cut(s)	260, 846
PaqCI	CACCTGC	1 cut(s)	968
PciI	ACATGT	1 cut(s)	600
PfeI	GAWTC	3 cut(s)	211, 362, 479
PkrI	GCNGC	1 cut(s)	16
Ppu21I	YACGTR	2 cut(s)	498, 969
PscI	ACATGT	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	124
PspEI	GGTNACC	1 cut(s)	323
PspFI	CCCAGC	1 cut(s)	833
PspGI	CCWGG	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	53
PspXI	VCTCGAGB	1 cut(s)	846
PstNI	CAGNNNCTG	1 cut(s)	833
PsuI	RGATCY	1 cut(s)	227
RsaI	GTAC	4 cut(s)	219, 500, 741, 971
RsaNI	GTAC	4 cut(s)	218, 499, 740, 970
RseI	CAYNNNNRTG	1 cut(s)	659
SacII	CCGCGG	1 cut(s)	799
SaqAI	TTAA	2 cut(s)	554, 678
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	3 cut(s)	227, 389, 933
Sau96I	GGNCC	1 cut(s)	53
ScaI	AGTACT	1 cut(s)	741
ScrFI	CCNGG	1 cut(s)	126
SduI	GDGCHC	2 cut(s)	37, 717
SfaNI	GCATC	5 cut(s)	17, 183, 244, 638, 850
SfcI	CTRYAG	1 cut(s)	141
Sfr274I	CTCGAG	2 cut(s)	260, 846
Sfr303I	CCGCGG	1 cut(s)	799
SgrBI	CCGCGG	1 cut(s)	799
SinI	GGWCC	1 cut(s)	53
SlaI	CTCGAG	2 cut(s)	260, 846
SmiMI	CAYNNNNRTG	1 cut(s)	659
SmlI	CTYRAG	3 cut(s)	260, 449, 846
SmoI	CTYRAG	3 cut(s)	260, 449, 846
SphI	GCATGC	1 cut(s)	51
Sse9I	AATT	4 cut(s)	82, 384, 531, 618
SsiI	CCGC	5 cut(s)	51, 237, 393, 796, 798
SspI	AATATT	1 cut(s)	574
SspMI	CTAG	6 cut(s)	30, 483, 519, 626, 771, 875
StyD4I	CCNGG	1 cut(s)	124
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	2 cut(s)	432, 559
TaiI	ACGT	3 cut(s)	500, 705, 971
TaqI	TCGA	5 cut(s)	261, 388, 400, 785, 847
TasI	AATT	4 cut(s)	82, 384, 531, 618
TatI	WGTACW	2 cut(s)	217, 739
TfiI	GAWTC	3 cut(s)	211, 362, 479
Tru1I	TTAA	2 cut(s)	554, 678
Tru9I	TTAA	2 cut(s)	554, 678
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	5 cut(s)	219, 324, 330, 354, 433
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	1 cut(s)	618
XceI	RCATGY	3 cut(s)	51, 546, 604
XhoI	CTCGAG	2 cut(s)	260, 846
XspI	CTAG	6 cut(s)	30, 483, 519, 626, 771, 875
ZrmI	AGTACT	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.