Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001216

Physical Location & Seq

Genomic Coordinates Reverse (-)

3873849 .. 3875756

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0054800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGCAGAGGCTTGTTTCTGTGAAATTGGCCTTAAACCTCTCTAAAACCCTCTCAACCTCAACCACCACAACTCCACAAGCTCTTCTCTTTGCCACGAGGCACTTTTTGTTGGGTTCCGCAAATACCCTTTTAAGCAAGAGGCTTTCGGATTGCAGGCTTGCCTTTCTCCAAACCCAATTTCCCAAACAGAGATTTCAGTTCATCCCAAGCTCTAATTCTCGGGAGAGTGCCGGGAGCTCATGGTTTCAAACCATATCGAGTAATGACCTGGTTTTTGGATTGATCATGGCTAATGTTGCTGTTTTCCTTTTATGGAGGATACTAAACCCTATATGCTTGTACGACAATTTTACTACCTCATTATACAATTTTATGCTTGGACGTGTTCACACAATGATAACTCCTGCAATTACTCATGCGAATGTTGGGCATATGATTGGTAGAGTTTTTGCTGAAGTTGTATGTAGCTGGAGCTATTGGTGGCTCAGTCTTTTACTTGGTGCACCATACCTTCCTGAACCTGATTACTCCAACAGAGGGCAGAAAAGAGAATATCAGTATCAAACCAAAATTGGTAAGCTATCAGCAACCCTTTACATTCTGTGGGCCATTCTCAAAAAACCAGACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0008150 GO:0009705 GO:0015698 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 SPX

Protein Analysis

210

Amino Acids

23.94

Weight (kDa)

9.83

Isoelectric Point (pI)

26.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63010 AT1G63010 AT1G63010 AT1G63010 AT1G63010 AT1G63010 AT1G63010 AT4G11810 AT4G11810 AT4G11810 AT4G22990 AT4G22990 AT4G22990
fragaria_vesca	FvH4_5g01390 FvH4_7g12920 FvH4_7g12920 FvH4_7g12920
malus_domestica	MD02G1195400.v1.1 MD04G1068900.v1.1 MD06G1069900.v1.1
prunus_persica	Prupe.2G153100_v2.0.a1 Prupe.2G153100_v2.0.a1 Prupe.2G153100_v2.0.a1 Prupe.5G089200_v2.0.a1 Prupe.5G089200_v2.0.a1 Prupe.5G089200_v2.0.a1 Prupe.5G089200_v2.0.a1 Prupe.5G089200_v2.0.a1
pyrus_communis	pycom02g15930 pycom04g06270 pycom06g07090
rosa_chinensis	RchiOBHm_Chr1g0352001 RchiOBHm_Chr7g0199491
rosa_laevigata	RLG00000003789 RLG00000028368
rosa_multiflora	Rmu_sc0003549.1_g000001 Rmu_sc0004009.1_g000006 Rmu_sc0007728.1_g000012
rosa_roxburghii	Rroxscaffold_3G00256680 Rroxscaffold_4G00303360
rosa_rugosa	Rorug01G0223300 Rorug01G0223400 Rorug07G0054600 Rorug07G0054700 Rorug07G0054800 Rorug07G0054900
rosa_samantha	Rh1AG237400 Rh1BG207600 Rh1CG221800 Rh1DG234600 Rh7AG179600 Rh7BG182900 Rh7CG188200 Rh7DG182300
rosa_wichuraiana	Rw1G020650 Rw7G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	117
AcuI	CTGAAG	1 cut(s)	474
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	537
AflIII	ACRYGT	1 cut(s)	382
AgsI	TTSAA	1 cut(s)	248
AjiI	CACGTC	1 cut(s)	383
AjnI	CCWGG	1 cut(s)	267
AjuI	GAANNNNNNNTTGG	4 cut(s)	162, 194, 199, 231
AluBI	AGCT	6 cut(s)	80, 210, 237, 468, 474, 580
AluI	AGCT	6 cut(s)	80, 210, 237, 468, 474, 580
Alw21I	GWGCWC	2 cut(s)	239, 505
Alw44I	GTGCAC	1 cut(s)	501
Ama87I	CYCGRG	1 cut(s)	219
AoxI	GGCC	2 cut(s)	27, 606
ApaLI	GTGCAC	1 cut(s)	501
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AspS9I	GGNCC	1 cut(s)	606
AsuC2I	CCSGG	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	219
BaeGI	GKGCMC	1 cut(s)	505
BanII	GRGCYC	1 cut(s)	239
BauI	CACGAG	1 cut(s)	94
Bbv12I	GWGCWC	2 cut(s)	239, 505
BciT130I	CCWGG	1 cut(s)	269
BciVI	GTATCC	1 cut(s)	312
BclI	TGATCA	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	232
BfuI	GTATCC	1 cut(s)	312
Bme1390I	CCNGG	2 cut(s)	232, 269
BmeT110I	CYCGRG	1 cut(s)	219
BmgBI	CACGTC	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	606
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	2 cut(s)	232, 269
BpmI	CTGGAG	1 cut(s)	490
BpuMI	CCSGG	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bsc4I	CCNNNNNNNGG	1 cut(s)	537
BseBI	CCWGG	1 cut(s)	269
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	537
BseMII	CTCAG	1 cut(s)	499
BseSI	GKGCMC	1 cut(s)	505
BshFI	GGCC	2 cut(s)	29, 608
BsiHKAI	GWGCWC	2 cut(s)	239, 505
BsiHKCI	CYCGRG	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	537
BsnI	GGCC	2 cut(s)	29, 608
BsoBI	CYCGRG	1 cut(s)	219
Bsp1286I	GDGCHC	2 cut(s)	239, 505
Bsp143I	GATC	1 cut(s)	282
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	2 cut(s)	29, 608
BspCNI	CTCAG	1 cut(s)	498
BspLI	GGNNCC	1 cut(s)	115
BspQI	GCTCTTC	1 cut(s)	87
BssMI	GATC	1 cut(s)	282
BssSI	CACGAG	1 cut(s)	94
Bst2BI	CACGAG	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	269
Bst6I	CTCTTC	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	155, 159
BstDEI	CTNAG	1 cut(s)	485
BstF5I	GGATG	1 cut(s)	201
BstKTI	GATC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	2 cut(s)	230, 267
BstSLI	GKGCMC	1 cut(s)	505
BsuI	GTATCC	1 cut(s)	312
BsuRI	GGCC	2 cut(s)	29, 608
BtrI	CACGTC	1 cut(s)	383
BtsCI	GGATG	1 cut(s)	201
Cac8I	GCNNGC	2 cut(s)	155, 159
Cfr13I	GGNCC	1 cut(s)	606
CsiI	ACCWGGT	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	3 cut(s)	240, 286, 416
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	1 cut(s)	485
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Ecl136II	GAGCTC	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	239
Eco53kI	GAGCTC	1 cut(s)	237
Eco57I	CTGAAG	1 cut(s)	474
Eco88I	CYCGRG	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	239
FaeI	CATG	3 cut(s)	243, 289, 419
FatI	CATG	3 cut(s)	239, 285, 415
FauNDI	CATATG	1 cut(s)	432
FbaI	TGATCA	1 cut(s)	282
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	1 cut(s)	239
GsuI	CTGGAG	1 cut(s)	490
HaeIII	GGCC	2 cut(s)	29, 608
HapII	CCGG	1 cut(s)	231
Hin1II	CATG	3 cut(s)	243, 289, 419
HpaII	CCGG	1 cut(s)	231
Hpy166II	GTNNAC	2 cut(s)	388, 503
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	2 cut(s)	221, 515
Hpy8I	GTNNAC	2 cut(s)	388, 503
HpyAV	CCTTC	1 cut(s)	521
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	4 cut(s)	4, 153, 407, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	1 cut(s)	485
HpySE526I	ACGT	1 cut(s)	382
Hsp92II	CATG	3 cut(s)	243, 289, 419
Ksp22I	TGATCA	1 cut(s)	282
Kzo9I	GATC	1 cut(s)	282
LguI	GCTCTTC	1 cut(s)	87
LmnI	GCTCC	2 cut(s)	234, 471
LpnPI	CCDG	8 cut(s)	139, 244, 254, 281, 417, 454, 528, 534
MabI	ACCWGGT	1 cut(s)	267
MaeII	ACGT	1 cut(s)	382
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	1 cut(s)	74
MhlI	GDGCHC	2 cut(s)	239, 505
MluCI	AATT	7 cut(s)	23, 176, 214, 346, 367, 408, 570
MmeI	TCCRAC	1 cut(s)	555
MnlI	CCTC	8 cut(s)	47, 59, 67, 90, 132, 309, 367, 530
MseI	TTAA	2 cut(s)	32, 131
MslI	CAYNNNNRTG	1 cut(s)	420
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	2 cut(s)	232, 269
MvaI	CCWGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	296
NciI	CCSGG	1 cut(s)	232
NdeI	CATATG	1 cut(s)	432
NdeII	GATC	1 cut(s)	282
NlaIII	CATG	3 cut(s)	243, 289, 419
NlaIV	GGNNCC	1 cut(s)	115
PciSI	GCTCTTC	1 cut(s)	87
Psp124BI	GAGCTC	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	606
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	420
SacI	GAGCTC	1 cut(s)	239
SapI	GCTCTTC	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	32, 131
Sau3AI	GATC	1 cut(s)	282
Sau96I	GGNCC	1 cut(s)	606
ScrFI	CCNGG	2 cut(s)	232, 269
SduI	GDGCHC	2 cut(s)	239, 505
SexAI	ACCWGGT	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	420
Sse9I	AATT	7 cut(s)	23, 176, 214, 346, 367, 408, 570
SsiI	CCGC	1 cut(s)	117
SstI	GAGCTC	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	230, 267
TaiI	ACGT	1 cut(s)	385
TaqI	TCGA	1 cut(s)	257
TasI	AATT	7 cut(s)	23, 176, 214, 346, 367, 408, 570
Tru1I	TTAA	2 cut(s)	32, 131
Tru9I	TTAA	2 cut(s)	32, 131
TspDTI	ATGAA	1 cut(s)	190
VneI	GTGCAC	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.