Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001216

Physical Location & Seq

Genomic Coordinates Reverse (-)

3863786 .. 3869933

Gene Structure 6148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0054600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGCAGAGGCTTCTTTCTGTGAAATTGGCCTCAAACCTCCCTAAAACCCTCTCAAGCTCCACCACAAGCTCTTCTCTTTTCCACTTTCAGCCTCACAAAACCTTCTCCTTGACCAAACCACCCCAAAACCTCTTCTTTAGCTCCTTTCCCACACACCCACTTCAGCATCAGCACAATCTCAGTCAGAAAGTTCATGGCTTTTTCTCCAACCCATTACTCAGAAAGCACTTTTCTTTGGATTCCGCAAATACCCTTCTGAGAGTATCAAGCAAGAGGCTTTCGTATTGCAGGCTTGCCTTTCTCCAAAGAAAAACTCCCAAACAGAACTTTCAGTTCTTCCCAAGTTCTGATGCTCATCTGAGTGCTAGGAGATCATGGTATGGGAGGGTATCCAGTAATGACGTGCTTTTGGGATTGATTTTAGCTAATTTTGCTGTTTTTCTTTTATGGAAGATAGCAGATCCTGTATTCATGGTCAAGAATTTTACTCTCTCACTATACAGTATCACAAGTGGACGTCTTCACACATTGATAACTTCTGCATTTAGTCACTTGGTTGTTGAGGATATTCTTCTCAACATGTTCCTACTCTCTGTATTTGGGAACGATGTTGGAAGAACTTTTGGCCCTGAATTTTTGCTAAAGTTGTATCTAGCTGGAGCTATTGGTGGCTCAGTCTTTTACTTGGTGCAATATGTCCTGCTCGCATCAAAGGACGGAGACCTTTCAAACAGTCCCATATTGACATTGGGCGCACAAGGTGCTGTTACTGCTGTGATGTACTTTGACTTGTTACAACTCTGCACACGCATCCCAGCTTTCCTCTACTATCTGAACATATTACTGATGGCCTATCAAATTGGGGATTCCATTTCAAGGATCATACAGGGAAACAGTAGCTCAGGAAATGCACATGTGGGCGGCGCCGCAGTAGCAACTATTGCCTGGGTACGACTTCGGATGGGGCTTCGGGTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0008150 GO:0009705 GO:0015698 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 SPX

Protein Analysis

326

Amino Acids

36.3

Weight (kDa)

10.18

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	172 - 316	3.3e-15	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63010 AT1G63010 AT1G63010 AT1G63010 AT1G63010 AT1G63010 AT1G63010 AT4G11810 AT4G11810 AT4G11810 AT4G22990 AT4G22990 AT4G22990
fragaria_vesca	FvH4_5g01390 FvH4_7g12920 FvH4_7g12920 FvH4_7g12920
malus_domestica	MD02G1195400.v1.1 MD04G1068900.v1.1 MD06G1069900.v1.1
prunus_persica	Prupe.2G153100_v2.0.a1 Prupe.2G153100_v2.0.a1 Prupe.2G153100_v2.0.a1 Prupe.5G089200_v2.0.a1 Prupe.5G089200_v2.0.a1 Prupe.5G089200_v2.0.a1 Prupe.5G089200_v2.0.a1 Prupe.5G089200_v2.0.a1
pyrus_communis	pycom02g15930 pycom04g06270 pycom06g07090
rosa_chinensis	RchiOBHm_Chr1g0352001 RchiOBHm_Chr7g0199491
rosa_laevigata	RLG00000003789 RLG00000028368
rosa_multiflora	Rmu_sc0003549.1_g000001 Rmu_sc0004009.1_g000006 Rmu_sc0007728.1_g000012
rosa_roxburghii	Rroxscaffold_3G00256680 Rroxscaffold_4G00303360
rosa_rugosa	Rorug01G0223300 Rorug01G0223400 Rorug07G0054600 Rorug07G0054700 Rorug07G0054800 Rorug07G0054900
rosa_samantha	Rh1AG237400 Rh1BG207600 Rh1CG221800 Rh1DG234600 Rh7AG179600 Rh7BG182900 Rh7CG188200 Rh7DG182300
rosa_wichuraiana	Rw1G020650 Rw7G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	520
AccB1I	GGYRCC	1 cut(s)	923
AciI	CCGC	3 cut(s)	243, 921, 927
AclWI	GGATC	2 cut(s)	455, 887
AcsI	RAATTY	2 cut(s)	481, 632
AcuI	CTGAAG	1 cut(s)	146
AcyI	GRCGYC	2 cut(s)	517, 924
AdeI	CACNNNGTG	1 cut(s)	761
AfaI	GTAC	2 cut(s)	782, 951
AfiI	CCNNNNNNNGG	1 cut(s)	876
AflIII	ACRYGT	2 cut(s)	579, 913
AgsI	TTSAA	2 cut(s)	729, 876
AjiI	CACGTC	1 cut(s)	403
AjnI	CCWGG	1 cut(s)	944
AluBI	AGCT	8 cut(s)	57, 69, 141, 425, 656, 662, 818, 900
AluI	AGCT	8 cut(s)	57, 69, 141, 425, 656, 662, 818, 900
Alw26I	GTCTC	1 cut(s)	714
AlwI	GGATC	2 cut(s)	455, 887
AlwNI	CAGNNNCTG	1 cut(s)	464
AoxI	GGCC	3 cut(s)	27, 625, 849
ApoI	RAATTY	2 cut(s)	481, 632
AspLEI	GCGC	2 cut(s)	755, 926
AspS9I	GGNCC	1 cut(s)	626
BanI	GGYRCC	1 cut(s)	923
BbsI	GAAGAC	1 cut(s)	512
BccI	CCATC	2 cut(s)	841, 955
BciT130I	CCWGG	1 cut(s)	946
BciVI	GTATCC	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	714
BfaI	CTAG	2 cut(s)	366, 653
BfoI	RGCGCY	1 cut(s)	927
BfuI	GTATCC	1 cut(s)	400
BisI	GCNGC	2 cut(s)	922, 927
BlsI	GCNGC	2 cut(s)	923, 928
Bme1390I	CCNGG	1 cut(s)	946
BmgBI	CACGTC	1 cut(s)	403
BmgT120I	GGNCC	1 cut(s)	626
BmiI	GGNNCC	1 cut(s)	925
BmrFI	CCNGG	1 cut(s)	946
BmsI	GCATC	4 cut(s)	175, 340, 716, 819
BpiI	GAAGAC	1 cut(s)	512
BpmI	CTGGAG	1 cut(s)	678
Bpu10I	CCTNAGC	1 cut(s)	901
BpuEI	CTTGAG	1 cut(s)	37
BsaBI	GATNNNNATC	1 cut(s)	354
BsaHI	GRCGYC	2 cut(s)	517, 924
BsaI	GGTCTC	1 cut(s)	714
BsaJI	CCNNGG	1 cut(s)	945
Bsc4I	CCNNNNNNNGG	1 cut(s)	876
Bse1I	ACTGG	1 cut(s)	393
Bse8I	GATNNNNATC	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	946
BseDI	CCNNGG	1 cut(s)	945
BseGI	GGATG	2 cut(s)	810, 966
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	1 cut(s)	876
BseMII	CTCAG	6 cut(s)	193, 232, 248, 350, 687, 915
BseNI	ACTGG	1 cut(s)	393
BseYI	CCCAGC	1 cut(s)	814
BsgI	GTGCAG	1 cut(s)	787
BshFI	GGCC	3 cut(s)	29, 627, 851
BshNI	GGYRCC	1 cut(s)	923
BslFI	GGGAC	1 cut(s)	720
BslI	CCNNNNNNNGG	1 cut(s)	876
BsmAI	GTCTC	1 cut(s)	714
BsmFI	GGGAC	1 cut(s)	720
BsnI	GGCC	3 cut(s)	29, 627, 851
Bso31I	GGTCTC	1 cut(s)	714
Bsp143I	GATC	3 cut(s)	371, 460, 879
BspACI	CCGC	3 cut(s)	243, 921, 927
BspANI	GGCC	3 cut(s)	29, 627, 851
BspCNI	CTCAG	6 cut(s)	192, 231, 249, 351, 686, 914
BspLI	GGNNCC	1 cut(s)	925
BspPI	GGATC	2 cut(s)	455, 887
BspQI	GCTCTTC	1 cut(s)	76
BspT107I	GGYRCC	1 cut(s)	923
BspTNI	GGTCTC	1 cut(s)	714
BsrI	ACTGG	1 cut(s)	393
BssECI	CCNNGG	1 cut(s)	945
BssMI	GATC	3 cut(s)	371, 460, 879
BssNI	GRCGYC	2 cut(s)	517, 924
Bst2UI	CCWGG	1 cut(s)	946
Bst4CI	ACNGT	3 cut(s)	503, 734, 896
Bst6I	CTCTTC	2 cut(s)	76, 137
BstACI	GRCGYC	2 cut(s)	517, 924
BstAPI	GCANNNNNTGC	2 cut(s)	761, 941
BstC8I	GCNNGC	3 cut(s)	290, 294, 705
BstDEI	CTNAG	6 cut(s)	179, 218, 257, 359, 673, 901
BstF5I	GGATG	2 cut(s)	810, 966
BstH2I	RGCGCY	1 cut(s)	927
BstHHI	GCGC	2 cut(s)	755, 926
BstKTI	GATC	3 cut(s)	374, 463, 882
BstMAI	GTCTC	1 cut(s)	714
BstMBI	GATC	3 cut(s)	371, 460, 879
BstMWI	GCNNNNNNNGC	5 cut(s)	431, 761, 770, 932, 941
BstNI	CCWGG	1 cut(s)	946
BstNSI	RCATGY	2 cut(s)	583, 917
BstSCI	CCNGG	1 cut(s)	944
BstV2I	GAAGAC	1 cut(s)	512
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
BsuI	GTATCC	1 cut(s)	400
BsuRI	GGCC	3 cut(s)	29, 627, 851
BtrI	CACGTC	1 cut(s)	403
BtsCI	GGATG	2 cut(s)	810, 966
Cac8I	GCNNGC	3 cut(s)	290, 294, 705
CaiI	CAGNNNCTG	1 cut(s)	464
CfoI	GCGC	2 cut(s)	755, 926
Cfr13I	GGNCC	1 cut(s)	626
Csp6I	GTAC	2 cut(s)	781, 950
CviAII	CATG	5 cut(s)	194, 375, 472, 580, 914
CviQI	GTAC	2 cut(s)	781, 950
DdeI	CTNAG	6 cut(s)	179, 218, 257, 359, 673, 901
DinI	GGCGCC	1 cut(s)	925
DpnI	GATC	3 cut(s)	373, 462, 881
DpnII	GATC	3 cut(s)	371, 460, 879
DraIII	CACNNNGTG	1 cut(s)	761
Eam1104I	CTCTTC	2 cut(s)	76, 137
EarI	CTCTTC	2 cut(s)	76, 137
Eco31I	GGTCTC	1 cut(s)	714
Eco57I	CTGAAG	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	944
EgeI	GGCGCC	1 cut(s)	925
EheI	GGCGCC	1 cut(s)	925
FaeI	CATG	5 cut(s)	197, 378, 475, 583, 917
FaqI	GGGAC	1 cut(s)	720
FatI	CATG	5 cut(s)	193, 374, 471, 579, 913
Fnu4HI	GCNGC	2 cut(s)	922, 927
FokI	GGATG	2 cut(s)	797, 973
Fsp4HI	GCNGC	2 cut(s)	922, 927
FspBI	CTAG	2 cut(s)	366, 653
GlaI	GCGC	2 cut(s)	754, 925
GluI	GCNGC	2 cut(s)	922, 927
GsaI	CCCAGC	1 cut(s)	818
GsuI	CTGGAG	1 cut(s)	678
HaeII	RGCGCY	1 cut(s)	927
HaeIII	GGCC	3 cut(s)	29, 627, 851
HhaI	GCGC	2 cut(s)	755, 926
Hin1I	GRCGYC	2 cut(s)	517, 924
Hin1II	CATG	5 cut(s)	197, 378, 475, 583, 917
Hin6I	GCGC	2 cut(s)	753, 924
HinP1I	GCGC	2 cut(s)	753, 924
HinfI	GANTC	2 cut(s)	239, 866
Hpy166II	GTNNAC	1 cut(s)	515
Hpy188I	TCNGA	7 cut(s)	186, 221, 258, 349, 360, 834, 960
Hpy188III	TCNNGA	2 cut(s)	478, 903
Hpy8I	GTNNAC	1 cut(s)	515
HpyAV	CCTTC	2 cut(s)	112, 263
HpyCH4III	ACNGT	3 cut(s)	503, 734, 896
HpyCH4IV	ACGT	2 cut(s)	402, 517
HpyCH4V	TGCA	6 cut(s)	4, 288, 542, 691, 804, 911
HpyF10VI	GCNNNNNNNGC	5 cut(s)	431, 761, 770, 932, 941
HpyF3I	CTNAG	6 cut(s)	179, 218, 257, 359, 673, 901
HpySE526I	ACGT	2 cut(s)	402, 517
Hsp92I	GRCGYC	2 cut(s)	517, 924
Hsp92II	CATG	5 cut(s)	197, 378, 475, 583, 917
HspAI	GCGC	2 cut(s)	753, 924
KasI	GGCGCC	1 cut(s)	923
Kzo9I	GATC	3 cut(s)	371, 460, 879
LguI	GCTCTTC	1 cut(s)	76
LmnI	GCTCC	3 cut(s)	62, 146, 659
LweI	GCATC	4 cut(s)	175, 340, 716, 819
MaeI	CTAG	2 cut(s)	366, 653
MaeII	ACGT	2 cut(s)	402, 517
MaeIII	GTNAC	3 cut(s)	548, 766, 792
MalI	GATC	3 cut(s)	373, 462, 881
MboI	GATC	3 cut(s)	371, 460, 879
MboII	GAAGA	7 cut(s)	63, 124, 328, 463, 512, 563, 627
MflI	RGATCY	1 cut(s)	460
MluCI	AATT	5 cut(s)	23, 427, 481, 632, 858
Mly113I	GGCGCC	1 cut(s)	924
MmeI	TCCRAC	2 cut(s)	231, 592
MnlI	CCTC	9 cut(s)	40, 47, 59, 102, 140, 267, 378, 556, 833
MslI	CAYNNNNRTG	1 cut(s)	360
MspR9I	CCNGG	1 cut(s)	946
MvaI	CCWGG	1 cut(s)	946
MwoI	GCNNNNNNNGC	5 cut(s)	431, 761, 770, 932, 941
NarI	GGCGCC	1 cut(s)	924
NdeII	GATC	3 cut(s)	371, 460, 879
NlaIII	CATG	5 cut(s)	197, 378, 475, 583, 917
NlaIV	GGNNCC	1 cut(s)	925
NmuCI	GTSAC	1 cut(s)	548
NspI	RCATGY	2 cut(s)	583, 917
PciI	ACATGT	2 cut(s)	579, 913
PciSI	GCTCTTC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	239, 866
PkrI	GCNGC	2 cut(s)	923, 928
PluTI	GGCGCC	1 cut(s)	927
PscI	ACATGT	2 cut(s)	579, 913
Psp6I	CCWGG	1 cut(s)	944
PspFI	CCCAGC	1 cut(s)	814
PspGI	CCWGG	1 cut(s)	944
PspN4I	GGNNCC	1 cut(s)	925
PspPI	GGNCC	1 cut(s)	626
PstNI	CAGNNNCTG	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	460
RsaI	GTAC	2 cut(s)	782, 951
RsaNI	GTAC	2 cut(s)	781, 950
RseI	CAYNNNNRTG	1 cut(s)	360
SapI	GCTCTTC	1 cut(s)	76
SatI	GCNGC	2 cut(s)	922, 927
Sau3AI	GATC	3 cut(s)	371, 460, 879
Sau96I	GGNCC	1 cut(s)	626
ScrFI	CCNGG	1 cut(s)	946
SfaNI	GCATC	4 cut(s)	175, 340, 716, 819
SfoI	GGCGCC	1 cut(s)	925
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	5 cut(s)	23, 427, 481, 632, 858
SsiI	CCGC	3 cut(s)	243, 921, 927
SspDI	GGCGCC	1 cut(s)	923
SspMI	CTAG	2 cut(s)	366, 653
StyD4I	CCNGG	1 cut(s)	944
TaaI	ACNGT	3 cut(s)	503, 734, 896
TaiI	ACGT	2 cut(s)	405, 520
TasI	AATT	5 cut(s)	23, 427, 481, 632, 858
TatI	WGTACW	1 cut(s)	780
TauI	GCSGC	2 cut(s)	924, 929
TfiI	GAWTC	2 cut(s)	239, 866
TseFI	GTSAC	1 cut(s)	548
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	2 cut(s)	182, 460
TspGWI	ACGGA	1 cut(s)	732
XapI	RAATTY	2 cut(s)	481, 632
XceI	RCATGY	2 cut(s)	583, 917
XcmI	CCANNNNNNNNNTGG	1 cut(s)	745
XspI	CTAG	2 cut(s)	366, 653
ZraI	GACGTC	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.