Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001216

Physical Location & Seq

Genomic Coordinates Forward (+)

3875786 .. 3878238

Gene Structure 2453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0054900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAAATTGGGAAGGTGTGGAACATTTCAAATGCATGAAGGGCTTGCCCTTCTCCAAACCCAATTTCCCAAACAGAGATTTCAGTTCATCCCAAGCTCTAATTCTCGGGAGAGTGCCCGAAGATCATCATGGTTTCAAAGGGTATCAACCAATGACATGGTTTTGGGATTGATTCTAGCTAATTTTGTCTGTGGGAAGATAGCAGACACAAGATTCATGTACCAGAATTTTACTATTGGAAGAGTTTTTGGGCCTGGATTTTTGCTCAAGTTGTATCTAGCTGGAGCTATTGGTGGTTCAGTCTTTTACTTGGTGCACCATGCCTGGATGTGCTCACTGCCAGAGGGCGCAAGTGGTGCTGTTACTGCTACCATTTTGCTTGATATATTCCTCCGCCCCACAGCTACCCTCTACTTTATCATACCGGTTCCTGCCATGCTGCTGGGGATGTTTCTACTTGGGCAGGATTTCTTAAGGGTGAATTCGGGAAACAGTACAATCTCAGGATCTGCACACTTGGGTGGCACCAGTTGCAGCCATAGTCTGGGCACGACTTTGGAAGGGGCGTCATTTAGTTTAAACGGCTCTGCAGCTGATTACTTAGGCGTCATCTTTCAGATATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0008150 GO:0009705 GO:0015698 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 SPX

Protein Analysis

208

Amino Acids

22.58

Weight (kDa)

9.26

Isoelectric Point (pI)

30.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	78 - 184	7.1e-09	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63010 AT1G63010 AT1G63010 AT1G63010 AT1G63010 AT1G63010 AT1G63010 AT4G11810 AT4G11810 AT4G11810 AT4G22990 AT4G22990 AT4G22990
fragaria_vesca	FvH4_5g01390 FvH4_7g12920 FvH4_7g12920 FvH4_7g12920
malus_domestica	MD02G1195400.v1.1 MD04G1068900.v1.1 MD06G1069900.v1.1
prunus_persica	Prupe.2G153100_v2.0.a1 Prupe.2G153100_v2.0.a1 Prupe.2G153100_v2.0.a1 Prupe.5G089200_v2.0.a1 Prupe.5G089200_v2.0.a1 Prupe.5G089200_v2.0.a1 Prupe.5G089200_v2.0.a1 Prupe.5G089200_v2.0.a1
pyrus_communis	pycom02g15930 pycom04g06270 pycom06g07090
rosa_chinensis	RchiOBHm_Chr1g0352001 RchiOBHm_Chr7g0199491
rosa_laevigata	RLG00000003789 RLG00000028368
rosa_multiflora	Rmu_sc0003549.1_g000001 Rmu_sc0004009.1_g000006 Rmu_sc0007728.1_g000012
rosa_roxburghii	Rroxscaffold_3G00256680 Rroxscaffold_4G00303360
rosa_rugosa	Rorug01G0223300 Rorug01G0223400 Rorug07G0054600 Rorug07G0054700 Rorug07G0054800 Rorug07G0054900
rosa_samantha	Rh1AG237400 Rh1BG207600 Rh1CG221800 Rh1DG234600 Rh7AG179600 Rh7BG182900 Rh7CG188200 Rh7DG182300
rosa_wichuraiana	Rw1G020650 Rw7G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	524
AccB7I	CCANNNNNTGG	1 cut(s)	544
AciI	CCGC	1 cut(s)	394
AclWI	GGATC	1 cut(s)	514
AcsI	RAATTY	2 cut(s)	226, 481
AcyI	GRCGYC	2 cut(s)	566, 606
AfaI	GTAC	2 cut(s)	221, 496
AfiI	CCNNNNNNNGG	1 cut(s)	544
AflII	CTTAAG	1 cut(s)	472
AgeI	ACCGGT	1 cut(s)	424
AgsI	TTSAA	2 cut(s)	29, 137
AjnI	CCWGG	2 cut(s)	253, 323
AjuI	GAANNNNNNNTTGG	4 cut(s)	48, 80, 85, 117
AleI	CACNNNNGTG	1 cut(s)	519
AluBI	AGCT	6 cut(s)	96, 179, 281, 287, 404, 593
AluI	AGCT	6 cut(s)	96, 179, 281, 287, 404, 593
Alw21I	GWGCWC	2 cut(s)	318, 335
Alw44I	GTGCAC	1 cut(s)	314
AlwI	GGATC	1 cut(s)	514
AlwNI	CAGNNNCTG	1 cut(s)	509
Ama87I	CYCGRG	1 cut(s)	105
AoxI	GGCC	1 cut(s)	251
ApaLI	GTGCAC	1 cut(s)	314
ApeKI	GCWGC	3 cut(s)	439, 534, 590
ApoI	RAATTY	2 cut(s)	226, 481
AsiGI	ACCGGT	1 cut(s)	424
AspLEI	GCGC	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	490
AvaI	CYCGRG	1 cut(s)	105
BaeGI	GKGCMC	3 cut(s)	118, 318, 551
BanI	GGYRCC	1 cut(s)	524
Bbv12I	GWGCWC	2 cut(s)	318, 335
BbvI	GCAGC	3 cut(s)	426, 546, 602
BceAI	ACGGC	1 cut(s)	598
BciT130I	CCWGG	2 cut(s)	255, 325
BfaI	CTAG	2 cut(s)	176, 278
BfmI	CTRYAG	1 cut(s)	588
BfrI	CTTAAG	1 cut(s)	472
BisI	GCNGC	3 cut(s)	440, 535, 591
BlsI	GCNGC	3 cut(s)	441, 536, 592
Bme1390I	CCNGG	2 cut(s)	255, 325
BmeT110I	CYCGRG	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	2 cut(s)	429, 526
BmrFI	CCNGG	2 cut(s)	255, 325
BpmI	CTGGAG	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	251
BsaHI	GRCGYC	2 cut(s)	566, 606
BsaWI	WCCGGW	1 cut(s)	424
Bsc4I	CCNNNNNNNGG	1 cut(s)	544
Bse118I	RCCGGY	1 cut(s)	424
Bse1I	ACTGG	1 cut(s)	528
BseBI	CCWGG	2 cut(s)	255, 325
BseGI	GGATG	3 cut(s)	87, 333, 453
BseLI	CCNNNNNNNGG	1 cut(s)	544
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	1 cut(s)	528
BseSI	GKGCMC	3 cut(s)	118, 318, 551
BseXI	GCAGC	3 cut(s)	426, 546, 602
BseYI	CCCAGC	1 cut(s)	442
BsgI	GTGCAG	1 cut(s)	495
BshFI	GGCC	1 cut(s)	253
BshNI	GGYRCC	1 cut(s)	524
BshTI	ACCGGT	1 cut(s)	424
BsiHKAI	GWGCWC	2 cut(s)	318, 335
BsiHKCI	CYCGRG	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	425
BslI	CCNNNNNNNGG	1 cut(s)	544
BsnI	GGCC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	105
Bsp1286I	GDGCHC	4 cut(s)	118, 318, 335, 551
Bsp143I	GATC	2 cut(s)	122, 506
BspACI	CCGC	1 cut(s)	394
BspANI	GGCC	1 cut(s)	253
BspCNI	CTCAG	1 cut(s)	515
BspLI	GGNNCC	2 cut(s)	429, 526
BspMAI	CTGCAG	1 cut(s)	592
BspPI	GGATC	1 cut(s)	514
BspT107I	GGYRCC	1 cut(s)	524
BspTI	CTTAAG	1 cut(s)	472
BsrFI	RCCGGY	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	528
BssAI	RCCGGY	1 cut(s)	424
BssMI	GATC	2 cut(s)	122, 506
BssNI	GRCGYC	2 cut(s)	566, 606
Bst2UI	CCWGG	2 cut(s)	255, 325
Bst4CI	ACNGT	1 cut(s)	494
Bst6I	CTCTTC	1 cut(s)	235
BstACI	GRCGYC	2 cut(s)	566, 606
BstAFI	CTTAAG	1 cut(s)	472
BstAPI	GCANNNNNTGC	2 cut(s)	356, 531
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	2 cut(s)	502, 601
BstF5I	GGATG	3 cut(s)	87, 333, 453
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	2 cut(s)	125, 509
BstMBI	GATC	2 cut(s)	122, 506
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 356, 365, 531
BstNI	CCWGG	2 cut(s)	255, 325
BstSCI	CCNGG	2 cut(s)	253, 323
BstSFI	CTRYAG	1 cut(s)	588
BstSLI	GKGCMC	3 cut(s)	118, 318, 551
BstV1I	GCAGC	3 cut(s)	426, 546, 602
BstX2I	RGATCY	1 cut(s)	506
BstXI	CCANNNNNNTGG	2 cut(s)	157, 442
BstYI	RGATCY	1 cut(s)	506
BsuRI	GGCC	1 cut(s)	253
BtsCI	GGATG	3 cut(s)	87, 333, 453
BtsI	GCAGTG	1 cut(s)	335
BtsIMutI	CAGTG	1 cut(s)	335
Cac8I	GCNNGC	1 cut(s)	45
CaiI	CAGNNNCTG	1 cut(s)	509
CfoI	GCGC	1 cut(s)	350
Cfr10I	RCCGGY	1 cut(s)	424
Cfr13I	GGNCC	1 cut(s)	251
CseI	GACGC	2 cut(s)	555, 595
Csp6I	GTAC	2 cut(s)	220, 495
CspAI	ACCGGT	1 cut(s)	424
CviAII	CATG	6 cut(s)	35, 129, 157, 217, 320, 436
CviQI	GTAC	2 cut(s)	220, 495
DdeI	CTNAG	2 cut(s)	502, 601
DpnI	GATC	2 cut(s)	124, 508
DpnII	GATC	2 cut(s)	122, 506
DraI	TTTAAA	1 cut(s)	579
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
EciI	GGCGGA	1 cut(s)	383
Eco88I	CYCGRG	1 cut(s)	105
EcoRI	GAATTC	1 cut(s)	481
EcoRII	CCWGG	2 cut(s)	253, 323
EcoT22I	ATGCAT	1 cut(s)	36
FaeI	CATG	6 cut(s)	38, 132, 160, 220, 323, 439
FaiI	YATR	9 cut(s)	36, 130, 158, 218, 321, 386, 422, 437, 540
FatI	CATG	6 cut(s)	34, 128, 156, 216, 319, 435
Fnu4HI	GCNGC	3 cut(s)	440, 535, 591
FokI	GGATG	3 cut(s)	74, 340, 460
Fsp4HI	GCNGC	3 cut(s)	440, 535, 591
FspBI	CTAG	2 cut(s)	176, 278
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	3 cut(s)	440, 535, 591
GsaI	CCCAGC	1 cut(s)	446
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	253
HapII	CCGG	1 cut(s)	425
HgaI	GACGC	2 cut(s)	555, 595
HhaI	GCGC	1 cut(s)	350
Hin1I	GRCGYC	2 cut(s)	566, 606
Hin1II	CATG	6 cut(s)	38, 132, 160, 220, 323, 439
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HinfI	GANTC	2 cut(s)	172, 213
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	2 cut(s)	618, 626
Hpy188III	TCNNGA	3 cut(s)	107, 486, 504
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	4 cut(s)	6, 32, 59, 554
HpyCH4III	ACNGT	1 cut(s)	494
HpyCH4V	TGCA	5 cut(s)	34, 316, 512, 534, 590
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 356, 365, 531
HpyF3I	CTNAG	2 cut(s)	502, 601
Hsp92I	GRCGYC	2 cut(s)	566, 606
Hsp92II	CATG	6 cut(s)	38, 132, 160, 220, 323, 439
HspAI	GCGC	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	122, 506
LmnI	GCTCC	1 cut(s)	284
Lsp1109I	GCAGC	3 cut(s)	426, 546, 602
MaeI	CTAG	2 cut(s)	176, 278
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	2 cut(s)	124, 508
MboI	GATC	2 cut(s)	122, 506
MboII	GAAGA	3 cut(s)	132, 208, 252
MflI	RGATCY	1 cut(s)	506
MhlI	GDGCHC	4 cut(s)	118, 318, 335, 551
MluCI	AATT	6 cut(s)	5, 62, 100, 181, 226, 481
MnlI	CCTC	3 cut(s)	337, 401, 419
Mph1103I	ATGCAT	1 cut(s)	36
MseI	TTAA	2 cut(s)	473, 578
MslI	CAYNNNNRTG	1 cut(s)	519
MspA1I	CMGCKG	1 cut(s)	593
MspCI	CTTAAG	1 cut(s)	472
MspI	CCGG	1 cut(s)	425
MspR9I	CCNGG	2 cut(s)	255, 325
MssI	GTTTAAAC	1 cut(s)	579
MvaI	CCWGG	2 cut(s)	255, 325
MwoI	GCNNNNNNNGC	4 cut(s)	40, 356, 365, 531
NdeII	GATC	2 cut(s)	122, 506
NlaIII	CATG	6 cut(s)	38, 132, 160, 220, 323, 439
NlaIV	GGNNCC	2 cut(s)	429, 526
NsiI	ATGCAT	1 cut(s)	36
OliI	CACNNNNGTG	1 cut(s)	519
PfeI	GAWTC	2 cut(s)	172, 213
PflMI	CCANNNNNTGG	1 cut(s)	544
PinAI	ACCGGT	1 cut(s)	424
PkrI	GCNGC	3 cut(s)	441, 536, 592
PmeI	GTTTAAAC	1 cut(s)	579
Psp6I	CCWGG	2 cut(s)	253, 323
PspFI	CCCAGC	1 cut(s)	442
PspGI	CCWGG	2 cut(s)	253, 323
PspN4I	GGNNCC	2 cut(s)	429, 526
PspPI	GGNCC	1 cut(s)	251
PstI	CTGCAG	1 cut(s)	592
PstNI	CAGNNNCTG	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	506
PvuII	CAGCTG	1 cut(s)	593
RsaI	GTAC	2 cut(s)	221, 496
RsaNI	GTAC	2 cut(s)	220, 495
RseI	CAYNNNNRTG	1 cut(s)	519
SaqAI	TTAA	2 cut(s)	473, 578
SatI	GCNGC	3 cut(s)	440, 535, 591
Sau3AI	GATC	2 cut(s)	122, 506
Sau96I	GGNCC	1 cut(s)	251
ScrFI	CCNGG	2 cut(s)	255, 325
SduI	GDGCHC	4 cut(s)	118, 318, 335, 551
SetI	ASST	7 cut(s)	17, 98, 181, 283, 289, 406, 595
SfcI	CTRYAG	1 cut(s)	588
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	2 cut(s)	266, 472
SmoI	CTYRAG	2 cut(s)	266, 472
Sse9I	AATT	6 cut(s)	5, 62, 100, 181, 226, 481
SsiI	CCGC	1 cut(s)	394
SspMI	CTAG	2 cut(s)	176, 278
StyD4I	CCNGG	2 cut(s)	253, 323
TaaI	ACNGT	1 cut(s)	494
TasI	AATT	6 cut(s)	5, 62, 100, 181, 226, 481
TatI	WGTACW	1 cut(s)	494
TfiI	GAWTC	2 cut(s)	172, 213
Tru1I	TTAA	2 cut(s)	473, 578
Tru9I	TTAA	2 cut(s)	473, 578
TscAI	CASTG	1 cut(s)	342
TseI	GCWGC	3 cut(s)	439, 534, 590
TspDTI	ATGAA	4 cut(s)	17, 51, 76, 205
TspRI	CASTG	1 cut(s)	342
Van91I	CCANNNNNTGG	1 cut(s)	544
Vha464I	CTTAAG	1 cut(s)	472
VneI	GTGCAC	1 cut(s)	314
XapI	RAATTY	2 cut(s)	226, 481
XspI	CTAG	2 cut(s)	176, 278
Zsp2I	ATGCAT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.